I: pbuilder: network access will be disabled during build I: Current time: Fri Jul 3 14:37:51 +14 2020 I: pbuilder-time-stamp: 1593736671 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lammps_0~20181211.gitad1b1897d+dfsg1-2.dsc] I: copying [./lammps_0~20181211.gitad1b1897d+dfsg1.orig.tar.xz] I: copying [./lammps_0~20181211.gitad1b1897d+dfsg1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Mar 8 20:59:52 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lammps_0~20181211.gitad1b1897d+dfsg1-2.dsc dpkg-source: info: extracting lammps in lammps-0~20181211.gitad1b1897d+dfsg1 dpkg-source: info: unpacking lammps_0~20181211.gitad1b1897d+dfsg1.orig.tar.xz dpkg-source: info: unpacking lammps_0~20181211.gitad1b1897d+dfsg1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_enable_spglib.patch dpkg-source: info: applying 20_set_potentials_path.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/14943/tmp/hooks/D01_modify_environment starting debug: Running on cbxi4pro0. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/14943/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/14943/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=1e906da3428449f49eeed9564b9ba0e3 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=14943 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.TGylDHAAwN/pbuilderrc_QqVU --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.TGylDHAAwN/b2 --logfile b2/build.log lammps_0~20181211.gitad1b1897d+dfsg1-2.dsc' SUDO_GID=115 SUDO_UID=111 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:8000/ I: uname -a Linux i-capture-the-hostname 4.19.0-9-armmp #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash -rwxr-xr-x 1 root root 71648 Mar 1 2019 date -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd -rwxr-xr-x 1 root root 55672 Mar 1 2019 df -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 18260 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln -rwxr-xr-x 1 root root 34932 Jul 27 2018 login -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 10 2019 more -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jul 3 14:40 sh -> bash lrwxrwxrwx 1 root root 4 Jul 2 22:27 sh.distrib -> dash -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty -rwsr-xr-x 1 root root 42472 Jan 10 2019 su -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch -rwxr-xr-x 1 root root 18260 Mar 1 2019 true -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/14943/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libeigen3-dev, cmake, gfortran | fortran-compiler, libfftw3-dev, libjpeg-dev, mpi-default-bin, mpi-default-dev, libpython-dev, libsymspg-dev, libavcodec-dev, libnetcdf-dev, libvtk6-dev, voro++-dev, ocl-icd-opencl-dev, texlive-latex-recommended, htmldoc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on gfortran | fortran-compiler; however: Package gfortran is not installed. Package fortran-compiler is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libjpeg-dev; however: Package libjpeg-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-bin; however: Package mpi-default-bin is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on libpython-dev; however: Package libpython-dev is not installed. pbuilder-satisfydepends-dummy depends on libsymspg-dev; however: Package libsymspg-dev is not installed. pbuilder-satisfydepends-dummy depends on libavcodec-dev; however: Package libavcodec-dev is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on libvtk6-dev; however: Package libvtk6-dev is not installed. pbuilder-satisfydepends-dummy depends on voro++-dev; however: Package voro++-dev is not installed. pbuilder-satisfydepends-dummy depends on ocl-icd-opencl-dev; however: Package ocl-icd-opencl-dev is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on htmldoc; however: Package htmldoc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} cython{a} debhelper{a} default-libmysqlclient-dev{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gdal-data{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} hdf5-helpers{a} htmldoc{a} htmldoc-common{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} iso-codes{a} libaec-dev{a} libaec0{a} libaom0{a} libarchive-zip-perl{a} libarchive13{a} libarmadillo-dev{a} libarmadillo9{a} libarpack2{a} libarpack2-dev{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavcodec-dev{a} libavcodec58{a} libavformat-dev{a} libavformat58{a} libavutil-dev{a} libavutil56{a} libblas-dev{a} libblas3{a} libbluray2{a} libboost-dev{a} libboost1.67-dev{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcap2{a} libcap2-bin{a} libcharls-dev{a} libcharls2{a} libchromaprint1{a} libcodec2-0.8.1{a} libcroco3{a} libcups2{a} libcupsimage2{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdap-dev{a} libdap25{a} libdapclient6v5{a} libdapserver7v5{a} libdatrie1{a} libdbus-1-3{a} libdouble-conversion1{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-dev{a} libdrm-etnaviv1{a} libdrm-exynos1{a} libdrm-freedreno1{a} libdrm-nouveau2{a} libdrm-omap1{a} libdrm-radeon1{a} libdrm-tegra0{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1{a} libepsilon-dev{a} libepsilon1{a} libevdev2{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libexpat1-dev{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfltk1.1{a} libfontconfig1{a} libfontconfig1-dev{a} libfreetype6{a} libfreetype6-dev{a} libfreexl-dev{a} libfreexl1{a} libfribidi0{a} libfyba-dev{a} libfyba0{a} libgbm1{a} libgdal-dev{a} libgdal20{a} libgdk-pixbuf2.0-0{a} libgdk-pixbuf2.0-common{a} libgeos-3.7.1{a} libgeos-c1v5{a} libgeos-dev{a} libgeotiff-dev{a} libgeotiff2{a} libgfortran-8-dev{a} libgfortran5{a} libgif-dev{a} libgif7{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libgl2ps-dev{a} libgl2ps1.4{a} libglapi-mesa{a} libgles1{a} libgles2{a} libglib2.0-0{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgme0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0{a} libgnutls-openssl27{a} libgnutls28-dev{a} libgnutlsxx28{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgsm1{a} libgssapi-krb5-2{a} libgstreamer-plugins-base1.0-0{a} libgstreamer1.0-0{a} libgudev-1.0-0{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libhdf4-0-alt{a} libhdf4-alt-dev{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103{a} libhdf5-openmpi-dev{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libhyphen0{a} libibverbs-dev{a} libibverbs1{a} libice-dev{a} libice6{a} libicu-dev{a} libicu63{a} libidn11{a} libidn2-dev{a} libijs-0.35{a} libinput-bin{a} libinput10{a} libjbig-dev{a} libjbig0{a} libjbig2dec0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-c-dev{a} libjson-c3{a} libjsoncpp-dev{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkml-dev{a} libkmlbase1{a} libkmlconvenience1{a} libkmldom1{a} libkmlengine1{a} libkmlregionator1{a} libkmlxsd1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libllvm7{a} libltdl-dev{a} libltdl7{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmariadb-dev{a} libmariadb-dev-compat{a} libmariadb3{a} libminizip-dev{a} libminizip1{a} libmp3lame0{a} libmpg123-0{a} libmtdev1{a} libncurses6{a} libnetcdf-c++4{a} libnetcdf-cxx-legacy-dev{a} libnetcdf-dev{a} libnetcdf13{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnspr4{a} libnss3{a} libodbc1{a} libogdi3.2{a} libogdi3.2-dev{a} libogg-dev{a} libogg0{a} libopengl0{a} libopenjp2-7{a} libopenjp2-7-dev{a} libopenmpi-dev{a} libopenmpi3{a} libopenmpt0{a} libopus0{a} liborc-0.4-0{a} libp11-kit-dev{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpcre16-3{a} libpcre2-16-0{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpmix2{a} libpng-dev{a} libpng16-16{a} libpoppler-dev{a} libpoppler-private-dev{a} libpoppler82{a} libpopt0{a} libpotrace0{a} libpq-dev{a} libpq5{a} libprocps7{a} libproj-dev{a} libproj13{a} libpsl5{a} libptexenc1{a} libpthread-stubs0-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libqhull-dev{a} libqhull-r7{a} libqhull7{a} libqt5core5a{a} libqt5dbus5{a} libqt5gui5{a} libqt5network5{a} libqt5opengl5{a} libqt5positioning5{a} libqt5printsupport5{a} libqt5qml5{a} libqt5quick5{a} libqt5sensors5{a} libqt5webchannel5{a} libqt5webkit5{a} libqt5widgets5{a} libreadline7{a} librhash0{a} librsvg2-2{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libshine3{a} libsigsegv2{a} libsm-dev{a} libsm6{a} libsnappy1v5{a} libsodium23{a} libsoxr0{a} libspatialite-dev{a} libspatialite7{a} libspeex1{a} libsqlite3-dev{a} libssh-gcrypt-4{a} libssh2-1{a} libssl1.1{a} libsuperlu-dev{a} libsuperlu5{a} libswresample-dev{a} libswresample3{a} libswscale-dev{a} libswscale5{a} libsymspg-dev{a} libsymspg1{a} libsynctex2{a} libsz2{a} libtasn1-6-dev{a} libtcl8.6{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libtexluajit2{a} libthai-data{a} libthai0{a} libtheora-dev{a} libtheora0{a} libtiff-dev{a} libtiff5{a} libtiffxx5{a} libtk8.6{a} libtool{a} libtwolame0{a} libuchardet0{a} libunbound8{a} liburiparser-dev{a} liburiparser1{a} libuv1{a} libva-drm2{a} libva-x11-2{a} libva2{a} libvdpau1{a} libvorbis0a{a} libvorbisenc2{a} libvorbisfile3{a} libvoro++1{a} libvpx5{a} libvtk6-dev{a} libvtk6-java{a} libvtk6-jni{a} libvtk6.3{a} libvtk6.3-qt{a} libwacom-common{a} libwacom2{a} libwavpack1{a} libwayland-client0{a} libwayland-server0{a} libwebp-dev{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libwoff1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb-dev{a} libx11-xcb1{a} libx264-155{a} libx265-165{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri2-0-dev{a} libxcb-dri3-0{a} libxcb-dri3-dev{a} libxcb-glx0{a} libxcb-glx0-dev{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present-dev{a} libxcb-present0{a} libxcb-randr0{a} libxcb-randr0-dev{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shape0{a} libxcb-shape0-dev{a} libxcb-shm0{a} libxcb-sync-dev{a} libxcb-sync1{a} libxcb-util0{a} libxcb-xfixes0{a} libxcb-xfixes0-dev{a} libxcb-xinerama0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxerces-c-dev{a} libxerces-c3.2{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxft-dev{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxpm4{a} libxrender-dev{a} libxrender1{a} libxshmfence-dev{a} libxshmfence1{a} libxslt1.1{a} libxss-dev{a} libxss1{a} libxt-dev{a} libxt6{a} libxvidcore4{a} libxxf86vm-dev{a} libxxf86vm1{a} libxxhash0{a} libzstd-dev{a} libzvbi-common{a} libzvbi0{a} libzzip-0-13{a} lsb-base{a} m4{a} man-db{a} mariadb-common{a} mesa-common-dev{a} mime-support{a} mpi-default-bin{a} mpi-default-dev{a} mysql-common{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} odbcinst{a} odbcinst1debian2{a} opencl-c-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} po-debconf{a} poppler-data{a} procps{a} proj-data{a} python{a} python-asn1crypto{a} python-attr{a} python-autobahn{a} python-automat{a} python-cbor{a} python-cffi-backend{a} python-concurrent.futures{a} python-configparser{a} python-constantly{a} python-cryptography{a} python-enum34{a} python-future{a} python-hyperlink{a} python-incremental{a} python-ipaddress{a} python-lz4{a} python-minimal{a} python-mpi4py{a} python-nacl{a} python-openssl{a} python-pkg-resources{a} python-pyasn1{a} python-pyasn1-modules{a} python-pyqrcode{a} python-service-identity{a} python-six{a} python-snappy{a} python-trie{a} python-trollius{a} python-twisted{a} python-twisted-bin{a} python-twisted-core{a} python-txaio{a} python-u-msgpack{a} python-ubjson{a} python-vtk6{a} python-wsaccel{a} python-zope.interface{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tcl{a} tcl-dev{a} tcl-vtk6{a} tcl8.6{a} tcl8.6-dev{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} texlive-latex-recommended{a} tk{a} tk-dev{a} tk8.6{a} tk8.6-dev{a} ucf{a} unixodbc-dev{a} uuid-dev{a} voro++-dev{a} vtk6{a} x11-common{a} x11proto-core-dev{a} x11proto-damage-dev{a} x11proto-dev{a} x11proto-fixes-dev{a} x11proto-scrnsaver-dev{a} x11proto-xext-dev{a} x11proto-xf86vidmode-dev{a} xdg-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus deepin-terminal eterm fonts-droid-fallback geoclue-2.0 gnome-terminal gstreamer1.0-plugins-base javascript-common kitty konsole krb5-locales libaacs0 libarchive-cpio-perl libcoarrays-openmpi-dev libcupsfilters1 libfile-mimeinfo-perl libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libmail-sendmail-perl libnet-dbus-perl libpam-cap libpng-tools libqt5svg5 librsvg2-common libsasl2-modules libtasn1-doc libvdpau-va-gl1 libwacom-bin libx11-protocol-perl lilyterm lmodern lxterminal lynx mate-terminal mesa-va-drivers mesa-vdpau-drivers mlterm mlterm-tiny proj-bin psmisc pterm publicsuffix python-click python-dev python-idna python-png qt5-gtk-platformtheme qterminal qttranslations5-l10n rxvt-unicode sakura stterm terminator terminology termit tilix va-driver-all vdpau-driver-all vdpau-va-driver wget x11-utils x11-xserver-utils xauth xdg-user-dirs xfce4-terminal xiterm+thai xterm 0 packages upgraded, 562 newly installed, 0 to remove and 0 not upgraded. Need to get 350 MB of archives. After unpacking 1367 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf libpython2.7-minimal armhf 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main armhf python2.7-minimal armhf 2.7.16-2+deb10u1 [1171 kB] Get: 9 http://deb.debian.org/debian buster/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main armhf python-minimal armhf 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB] Get: 12 http://deb.debian.org/debian buster/main armhf mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 14 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB] Get: 16 http://deb.debian.org/debian buster/main armhf libpython2.7-stdlib armhf 2.7.16-2+deb10u1 [1837 kB] Get: 17 http://deb.debian.org/debian buster/main armhf python2.7 armhf 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main armhf python2 armhf 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main armhf python armhf 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf libglvnd0 armhf 1.1.0-1 [49.1 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libdrm-common all 2.4.97-1 [13.8 kB] Get: 24 http://deb.debian.org/debian buster/main armhf libdrm2 armhf 2.4.97-1 [35.7 kB] Get: 25 http://deb.debian.org/debian buster/main armhf libwayland-server0 armhf 1.16.0-1 [26.5 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libgbm1 armhf 18.3.6-2+deb10u1 [64.4 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libglapi-mesa armhf 18.3.6-2+deb10u1 [71.7 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libwayland-client0 armhf 1.16.0-1 [21.6 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libx11-xcb1 armhf 2:1.6.7-1 [190 kB] Get: 30 http://deb.debian.org/debian buster/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB] Get: 31 http://deb.debian.org/debian buster/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 32 http://deb.debian.org/debian buster/main armhf libxcb1 armhf 1.13.1-2 [132 kB] Get: 33 http://deb.debian.org/debian buster/main armhf libxcb-dri2-0 armhf 1.13.1-2 [100 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libxcb-dri3-0 armhf 1.13.1-2 [100.0 kB] Get: 35 http://deb.debian.org/debian buster/main armhf libxcb-present0 armhf 1.13.1-2 [99.0 kB] Get: 36 http://deb.debian.org/debian buster/main armhf libxcb-sync1 armhf 1.13.1-2 [102 kB] Get: 37 http://deb.debian.org/debian buster/main armhf libxcb-xfixes0 armhf 1.13.1-2 [103 kB] Get: 38 http://deb.debian.org/debian buster/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get: 39 http://deb.debian.org/debian buster/main armhf libegl-mesa0 armhf 18.3.6-2+deb10u1 [117 kB] Get: 40 http://deb.debian.org/debian buster/main armhf libegl1 armhf 1.1.0-1 [28.1 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libgles2 armhf 1.1.0-1 [19.9 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libcap2 armhf 1:2.25-2 [16.3 kB] Get: 44 http://deb.debian.org/debian buster/main armhf libcap2-bin armhf 1:2.25-2 [28.0 kB] Get: 45 http://deb.debian.org/debian buster/main armhf libgstreamer1.0-0 armhf 1.14.4-1 [2031 kB] Get: 46 http://deb.debian.org/debian buster/main armhf liborc-0.4-0 armhf 1:0.4.28-3.1 [120 kB] Get: 47 http://deb.debian.org/debian buster/main armhf iso-codes all 4.2-1 [2713 kB] Get: 48 http://deb.debian.org/debian buster/main armhf libgstreamer-plugins-base1.0-0 armhf 1.14.4-2 [1871 kB] Get: 49 http://deb.debian.org/debian buster/main armhf libhyphen0 armhf 2.8.8-7 [29.9 kB] Get: 50 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 51 http://deb.debian.org/debian buster/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [112 kB] Get: 52 http://deb.debian.org/debian buster/main armhf libpng16-16 armhf 1.6.36-6 [275 kB] Get: 53 http://deb.debian.org/debian buster/main armhf libdouble-conversion1 armhf 3.1.0-3 [39.0 kB] Get: 54 http://deb.debian.org/debian buster/main armhf libpcre2-16-0 armhf 10.32-5 [179 kB] Get: 55 http://deb.debian.org/debian buster/main armhf libqt5core5a armhf 5.11.3+dfsg1-1+deb10u3 [1684 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libfreetype6 armhf 2.9.1-3+deb10u1 [322 kB] Get: 57 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 58 http://deb.debian.org/debian buster/main armhf ucf all 3.0038+nmu1 [69.0 kB] Get: 59 http://deb.debian.org/debian buster/main armhf fonts-dejavu-core all 2.37-1 [1068 kB] Get: 60 http://deb.debian.org/debian buster/main armhf fontconfig-config all 2.13.1-2 [280 kB] Get: 61 http://deb.debian.org/debian buster/main armhf libfontconfig1 armhf 2.13.1-2 [328 kB] Get: 62 http://deb.debian.org/debian buster/main armhf fontconfig armhf 2.13.1-2 [404 kB] Get: 63 http://deb.debian.org/debian buster/main armhf libgraphite2-3 armhf 1.3.13-7 [70.3 kB] Get: 64 http://deb.debian.org/debian buster/main armhf libharfbuzz0b armhf 2.3.1-1 [1151 kB] Get: 65 http://deb.debian.org/debian buster/main armhf lsb-base all 10.2019051400 [28.4 kB] Get: 66 http://deb.debian.org/debian buster/main armhf x11-common all 1:7.7+19 [251 kB] Get: 67 http://deb.debian.org/debian buster/main armhf libice6 armhf 2:1.0.9-2 [51.7 kB] Get: 68 http://deb.debian.org/debian buster/main armhf libevdev2 armhf 1.6.0+dfsg-1 [25.3 kB] Get: 69 http://deb.debian.org/debian buster/main armhf libmtdev1 armhf 1.1.5-1+b1 [21.2 kB] Get: 70 http://deb.debian.org/debian buster/main armhf libgudev-1.0-0 armhf 232-2 [11.7 kB] Get: 71 http://deb.debian.org/debian buster/main armhf libwacom-common all 0.32-1 [39.1 kB] Get: 72 http://deb.debian.org/debian buster/main armhf libwacom2 armhf 0.32-1 [16.1 kB] Get: 73 http://deb.debian.org/debian buster/main armhf libinput-bin armhf 1.12.6-2 [16.3 kB] Get: 74 http://deb.debian.org/debian buster/main armhf libinput10 armhf 1.12.6-2 [92.2 kB] Get: 75 http://deb.debian.org/debian buster/main armhf libdbus-1-3 armhf 1.12.16-1 [190 kB] Get: 76 http://deb.debian.org/debian buster/main armhf libqt5dbus5 armhf 5.11.3+dfsg1-1+deb10u3 [204 kB] Get: 77 http://deb.debian.org/debian buster/main armhf libqt5network5 armhf 5.11.3+dfsg1-1+deb10u3 [585 kB] Get: 78 http://deb.debian.org/debian buster/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 79 http://deb.debian.org/debian buster/main armhf libx11-data all 2:1.6.7-1 [298 kB] Get: 80 http://deb.debian.org/debian buster/main armhf libx11-6 armhf 2:1.6.7-1 [698 kB] Get: 81 http://deb.debian.org/debian buster/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [26.3 kB] Get: 82 http://deb.debian.org/debian buster/main armhf libxcb-shm0 armhf 1.13.1-2 [99.0 kB] Get: 83 http://deb.debian.org/debian buster/main armhf libxcb-util0 armhf 0.3.8-3+b2 [21.9 kB] Get: 84 http://deb.debian.org/debian buster/main armhf libxcb-image0 armhf 0.4.0-1+b2 [23.3 kB] Get: 85 http://deb.debian.org/debian buster/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.8 kB] Get: 86 http://deb.debian.org/debian buster/main armhf libxcb-randr0 armhf 1.13.1-2 [109 kB] Get: 87 http://deb.debian.org/debian buster/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB] Get: 88 http://deb.debian.org/debian buster/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.4 kB] Get: 89 http://deb.debian.org/debian buster/main armhf libxcb-shape0 armhf 1.13.1-2 [99.3 kB] Get: 90 http://deb.debian.org/debian buster/main armhf libxcb-xinerama0 armhf 1.13.1-2 [98.7 kB] Get: 91 http://deb.debian.org/debian buster/main armhf libxcb-xkb1 armhf 1.13.1-2 [120 kB] Get: 92 http://deb.debian.org/debian buster/main armhf libxext6 armhf 2:1.3.3-1+b2 [48.1 kB] Get: 93 http://deb.debian.org/debian buster/main armhf libxi6 armhf 2:1.7.9-1 [78.4 kB] Get: 94 http://deb.debian.org/debian buster/main armhf xkb-data all 2.26-2 [681 kB] Get: 95 http://deb.debian.org/debian buster/main armhf libxkbcommon0 armhf 0.8.2-1 [111 kB] Get: 96 http://deb.debian.org/debian buster/main armhf libxkbcommon-x11-0 armhf 0.8.2-1 [37.9 kB] Get: 97 http://deb.debian.org/debian buster/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 98 http://deb.debian.org/debian buster/main armhf libqt5gui5 armhf 5.11.3+dfsg1-1+deb10u3 [2282 kB] Get: 99 http://deb.debian.org/debian buster/main armhf libqt5positioning5 armhf 5.11.3+dfsg-2 [166 kB] Get: 100 http://deb.debian.org/debian buster/main armhf libavahi-common-data armhf 0.7-4+b1 [122 kB] Get: 101 http://deb.debian.org/debian buster/main armhf libavahi-common3 armhf 0.7-4+b1 [51.1 kB] Get: 102 http://deb.debian.org/debian buster/main armhf libavahi-client3 armhf 0.7-4+b1 [54.5 kB] Get: 103 http://deb.debian.org/debian buster/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB] Get: 104 http://deb.debian.org/debian buster/main armhf libkrb5support0 armhf 1.17-3 [62.3 kB] Get: 105 http://deb.debian.org/debian buster/main armhf libk5crypto3 armhf 1.17-3 [119 kB] Get: 106 http://deb.debian.org/debian buster/main armhf libkrb5-3 armhf 1.17-3 [323 kB] Get: 107 http://deb.debian.org/debian buster/main armhf libgssapi-krb5-2 armhf 1.17-3 [137 kB] Get: 108 http://deb.debian.org/debian buster/main armhf libcups2 armhf 2.2.10-6+deb10u3 [291 kB] Get: 109 http://deb.debian.org/debian buster/main armhf libqt5widgets5 armhf 5.11.3+dfsg1-1+deb10u3 [1998 kB] Get: 110 http://deb.debian.org/debian buster/main armhf libqt5printsupport5 armhf 5.11.3+dfsg1-1+deb10u3 [201 kB] Get: 111 http://deb.debian.org/debian buster/main armhf libqt5qml5 armhf 5.11.3-4 [1091 kB] Get: 112 http://deb.debian.org/debian buster/main armhf libqt5quick5 armhf 5.11.3-4 [1094 kB] Get: 113 http://deb.debian.org/debian buster/main armhf libqt5sensors5 armhf 5.11.3-2 [99.2 kB] Get: 114 http://deb.debian.org/debian buster/main armhf libqt5webchannel5 armhf 5.11.3-2 [42.8 kB] Get: 115 http://deb.debian.org/debian buster/main armhf libwebp6 armhf 0.6.1-2 [229 kB] Get: 116 http://deb.debian.org/debian buster/main armhf libbrotli1 armhf 1.0.7-2 [259 kB] Get: 117 http://deb.debian.org/debian buster/main armhf libwoff1 armhf 1.0.2-1 [35.8 kB] Get: 118 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 119 http://deb.debian.org/debian buster/main armhf libxslt1.1 armhf 1.1.32-2.2~deb10u1 [217 kB] Get: 120 http://deb.debian.org/debian buster/main armhf libqt5webkit5 armhf 5.212.0~alpha2-21 [9319 kB] Get: 121 http://deb.debian.org/debian buster/main armhf poppler-data all 0.4.9-2 [1473 kB] Get: 122 http://deb.debian.org/debian buster/main armhf tex-common all 6.11 [53.1 kB] Get: 123 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 124 http://deb.debian.org/debian buster/main armhf libprocps7 armhf 2:3.3.15-2 [58.7 kB] Get: 125 http://deb.debian.org/debian buster/main armhf procps armhf 2:3.3.15-2 [248 kB] Get: 126 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 127 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 128 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 129 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 130 http://deb.debian.org/debian buster/main armhf libedit2 armhf 3.1-20181209-1 [79.5 kB] Get: 131 http://deb.debian.org/debian buster/main armhf openssh-client armhf 1:7.9p1-10+deb10u2 [704 kB] Get: 132 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 133 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 134 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 135 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 136 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 137 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 138 http://deb.debian.org/debian buster/main armhf cmake-data all 3.13.4-1 [1476 kB] Get: 139 http://deb.debian.org/debian buster/main armhf libarchive13 armhf 3.3.3-4+deb10u1 [277 kB] Get: 140 http://deb.debian.org/debian buster/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-1+deb10u1 [67.4 kB] Get: 141 http://deb.debian.org/debian buster/main armhf libsasl2-2 armhf 2.1.27+dfsg-1+deb10u1 [98.9 kB] Get: 142 http://deb.debian.org/debian buster/main armhf libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 143 http://deb.debian.org/debian buster/main armhf libldap-2.4-2 armhf 2.4.47+dfsg-3+deb10u2 [202 kB] Get: 144 http://deb.debian.org/debian buster/main armhf libnghttp2-14 armhf 1.36.0-2+deb10u1 [74.4 kB] Get: 145 http://deb.debian.org/debian buster/main armhf libpsl5 armhf 0.20.2-2 [52.4 kB] Get: 146 http://deb.debian.org/debian buster/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.9 kB] Get: 147 http://deb.debian.org/debian buster/main armhf libssh2-1 armhf 1.8.0-2.1 [129 kB] Get: 148 http://deb.debian.org/debian buster/main armhf libcurl4 armhf 7.64.0-4+deb10u1 [297 kB] Get: 149 http://deb.debian.org/debian buster/main armhf libjsoncpp1 armhf 1.7.4-3 [67.8 kB] Get: 150 http://deb.debian.org/debian buster/main armhf librhash0 armhf 1.3.8-1 [134 kB] Get: 151 http://deb.debian.org/debian buster/main armhf libuv1 armhf 1.24.1-1 [98.0 kB] Get: 152 http://deb.debian.org/debian buster/main armhf cmake armhf 3.13.4-1 [2848 kB] Get: 153 http://deb.debian.org/debian buster/main armhf cython armhf 0.29.2-2 [1306 kB] Get: 154 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 155 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 156 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 157 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 158 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 159 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 160 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 161 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 162 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 163 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 164 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 165 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 166 http://deb.debian.org/debian buster/main armhf mysql-common all 5.8+1.0.5 [7324 B] Get: 167 http://deb.debian.org/debian buster/main armhf mariadb-common all 1:10.3.22-0+deb10u1 [31.9 kB] Get: 168 http://deb.debian.org/debian buster/main armhf libmariadb3 armhf 1:10.3.22-0+deb10u1 [161 kB] Get: 169 http://deb.debian.org/debian buster/main armhf libevent-2.1-6 armhf 2.1.8-stable-4 [159 kB] Get: 170 http://deb.debian.org/debian buster/main armhf libunbound8 armhf 1.9.0-2+deb10u1 [410 kB] Get: 171 http://deb.debian.org/debian buster/main armhf libgnutls-dane0 armhf 3.6.7-4+deb10u3 [314 kB] Get: 172 http://deb.debian.org/debian buster/main armhf libgnutls-openssl27 armhf 3.6.7-4+deb10u3 [314 kB] Get: 173 http://deb.debian.org/debian buster/main armhf libgnutlsxx28 armhf 3.6.7-4+deb10u3 [12.1 kB] Get: 174 http://deb.debian.org/debian buster/main armhf libidn2-dev armhf 2.0.5-1+deb10u1 [76.6 kB] Get: 175 http://deb.debian.org/debian buster/main armhf libp11-kit-dev armhf 0.23.15-2 [195 kB] Get: 176 http://deb.debian.org/debian buster/main armhf libtasn1-6-dev armhf 4.13-3 [98.9 kB] Get: 177 http://deb.debian.org/debian buster/main armhf libgmpxx4ldbl armhf 2:6.1.2+dfsg-4 [21.7 kB] Get: 178 http://deb.debian.org/debian buster/main armhf libgmp-dev armhf 2:6.1.2+dfsg-4 [581 kB] Get: 179 http://deb.debian.org/debian buster/main armhf nettle-dev armhf 3.4.1-1 [1081 kB] Get: 180 http://deb.debian.org/debian buster/main armhf libgnutls28-dev armhf 3.6.7-4+deb10u3 [1046 kB] Get: 181 http://deb.debian.org/debian buster/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] Get: 182 http://deb.debian.org/debian buster/main armhf libmariadb-dev armhf 1:10.3.22-0+deb10u1 [998 kB] Get: 183 http://deb.debian.org/debian buster/main armhf libmariadb-dev-compat armhf 1:10.3.22-0+deb10u1 [31.0 kB] Get: 184 http://deb.debian.org/debian buster/main armhf default-libmysqlclient-dev armhf 1.0.5 [3764 B] Get: 185 http://deb.debian.org/debian buster/main armhf fonts-lmodern all 2.004.5-6 [4539 kB] Get: 186 http://deb.debian.org/debian buster/main armhf gdal-data all 2.4.0+dfsg-1 [744 kB] Get: 187 http://deb.debian.org/debian buster/main armhf libgfortran5 armhf 8.3.0-6 [213 kB] Get: 188 http://deb.debian.org/debian buster/main armhf libgfortran-8-dev armhf 8.3.0-6 [260 kB] Get: 189 http://deb.debian.org/debian buster/main armhf gfortran-8 armhf 8.3.0-6 [7219 kB] Get: 190 http://deb.debian.org/debian buster/main armhf gfortran armhf 4:8.3.0-1 [1424 B] Get: 191 http://deb.debian.org/debian buster/main armhf hdf5-helpers armhf 1.10.4+repack-10 [35.2 kB] Get: 192 http://deb.debian.org/debian buster/main armhf htmldoc-common all 1.9.3-1 [2125 kB] Get: 193 http://deb.debian.org/debian buster/main armhf libxcb-glx0 armhf 1.13.1-2 [114 kB] Get: 194 http://deb.debian.org/debian buster/main armhf libxfixes3 armhf 1:5.0.3-1 [20.6 kB] Get: 195 http://deb.debian.org/debian buster/main armhf libxdamage1 armhf 1:1.1.4-3+b3 [14.2 kB] Get: 196 http://deb.debian.org/debian buster/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 197 http://deb.debian.org/debian buster/main armhf libdrm-amdgpu1 armhf 2.4.97-1 [25.8 kB] Get: 198 http://deb.debian.org/debian buster/main armhf libdrm-etnaviv1 armhf 2.4.97-1 [19.7 kB] Get: 199 http://deb.debian.org/debian buster/main armhf libdrm-nouveau2 armhf 2.4.97-1 [24.2 kB] Get: 200 http://deb.debian.org/debian buster/main armhf libdrm-radeon1 armhf 2.4.97-1 [28.7 kB] Get: 201 http://deb.debian.org/debian buster/main armhf libllvm7 armhf 1:7.0.1-8 [11.3 MB] Get: 202 http://deb.debian.org/debian buster/main armhf libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 203 http://deb.debian.org/debian buster/main armhf libsensors5 armhf 1:3.5.0-3 [49.7 kB] Get: 204 http://deb.debian.org/debian buster/main armhf libgl1-mesa-dri armhf 18.3.6-2+deb10u1 [4103 kB] Get: 205 http://deb.debian.org/debian buster/main armhf libglx-mesa0 armhf 18.3.6-2+deb10u1 [162 kB] Get: 206 http://deb.debian.org/debian buster/main armhf libglx0 armhf 1.1.0-1 [25.5 kB] Get: 207 http://deb.debian.org/debian buster/main armhf libgl1 armhf 1.1.0-1 [105 kB] Get: 208 http://deb.debian.org/debian buster/main armhf libxft2 armhf 2.3.2-2 [50.1 kB] Get: 209 http://deb.debian.org/debian buster/main armhf libxinerama1 armhf 2:1.1.4-2 [17.3 kB] Get: 210 http://deb.debian.org/debian buster/main armhf libfltk1.1 armhf 1.1.10-26 [337 kB] Get: 211 http://deb.debian.org/debian buster/main armhf libxpm4 armhf 1:3.5.12-1 [44.0 kB] Get: 212 http://deb.debian.org/debian buster/main armhf htmldoc armhf 1.9.3-1 [163 kB] Get: 213 http://deb.debian.org/debian buster/main armhf libnl-3-200 armhf 3.4.0-1 [55.6 kB] Get: 214 http://deb.debian.org/debian buster/main armhf libnl-route-3-200 armhf 3.4.0-1 [136 kB] Get: 215 http://deb.debian.org/debian buster/main armhf libibverbs1 armhf 22.1-1 [44.1 kB] Get: 216 http://deb.debian.org/debian buster/main armhf ibverbs-providers armhf 22.1-1 [20.2 kB] Get: 217 http://deb.debian.org/debian buster/main armhf icu-devtools armhf 63.1-6+deb10u1 [168 kB] Get: 218 http://deb.debian.org/debian buster/main armhf libaec0 armhf 1.0.2-1 [21.9 kB] Get: 219 http://deb.debian.org/debian buster/main armhf libsz2 armhf 1.0.2-1 [6584 B] Get: 220 http://deb.debian.org/debian buster/main armhf libaec-dev armhf 1.0.2-1 [19.7 kB] Get: 221 http://deb.debian.org/debian buster/main armhf libaom0 armhf 1.0.0-3 [776 kB] Get: 222 http://deb.debian.org/debian buster/main armhf libblas3 armhf 3.8.0-2 [109 kB] Get: 223 http://deb.debian.org/debian buster/main armhf liblapack3 armhf 3.8.0-2 [1631 kB] Get: 224 http://deb.debian.org/debian buster/main armhf libarpack2 armhf 3.7.0-2 [88.1 kB] Get: 225 http://deb.debian.org/debian buster/main armhf libsuperlu5 armhf 5.2.1+dfsg1-4 [133 kB] Get: 226 http://deb.debian.org/debian buster/main armhf libarmadillo9 armhf 1:9.200.7+dfsg-1 [87.2 kB] Get: 227 http://deb.debian.org/debian buster/main armhf libblas-dev armhf 3.8.0-2 [117 kB] Get: 228 http://deb.debian.org/debian buster/main armhf liblapack-dev armhf 3.8.0-2 [1680 kB] Get: 229 http://deb.debian.org/debian buster/main armhf libarpack2-dev armhf 3.7.0-2 [100 kB] Get: 230 http://deb.debian.org/debian buster/main armhf libhdf5-103 armhf 1.10.4+repack-10 [1285 kB] Get: 231 http://deb.debian.org/debian buster/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [182 kB] Get: 232 http://deb.debian.org/debian buster/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 233 http://deb.debian.org/debian buster/main armhf libhdf5-cpp-103 armhf 1.10.4+repack-10 [123 kB] Get: 234 http://deb.debian.org/debian buster/main armhf libhdf5-dev armhf 1.10.4+repack-10 [2515 kB] Get: 235 http://deb.debian.org/debian buster/main armhf libsuperlu-dev armhf 5.2.1+dfsg1-4 [18.4 kB] Get: 236 http://deb.debian.org/debian buster/main armhf libarmadillo-dev armhf 1:9.200.7+dfsg-1 [360 kB] Get: 237 http://deb.debian.org/debian buster/main armhf libva2 armhf 2.4.0-1 [51.4 kB] Get: 238 http://deb.debian.org/debian buster/main armhf libva-drm2 armhf 2.4.0-1 [15.9 kB] Get: 239 http://deb.debian.org/debian buster/main armhf libva-x11-2 armhf 2.4.0-1 [19.3 kB] Get: 240 http://deb.debian.org/debian buster/main armhf libvdpau1 armhf 1.1.1-10 [39.9 kB] Get: 241 http://deb.debian.org/debian buster/main armhf libavutil56 armhf 7:4.1.4-1~deb10u1 [238 kB] Get: 242 http://deb.debian.org/debian buster/main armhf libpixman-1-0 armhf 0.36.0-1 [465 kB] Get: 243 http://deb.debian.org/debian buster/main armhf libcairo2 armhf 1.16.0-4 [616 kB] Get: 244 http://deb.debian.org/debian buster/main armhf libcodec2-0.8.1 armhf 0.8.1-2 [217 kB] Get: 245 http://deb.debian.org/debian buster/main armhf libgsm1 armhf 1.0.18-2 [26.5 kB] Get: 246 http://deb.debian.org/debian buster/main armhf libmp3lame0 armhf 3.100-2+b1 [350 kB] Get: 247 http://deb.debian.org/debian buster/main armhf libopenjp2-7 armhf 2.3.0-2+deb10u1 [143 kB] Get: 248 http://deb.debian.org/debian buster/main armhf libopus0 armhf 1.3-1 [172 kB] Get: 249 http://deb.debian.org/debian buster/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB] Get: 250 http://deb.debian.org/debian buster/main armhf libtiff5 armhf 4.1.0+git191117-2~deb10u1 [252 kB] Get: 251 http://deb.debian.org/debian buster/main armhf shared-mime-info armhf 1.10-1 [763 kB] Get: 252 http://deb.debian.org/debian buster/main armhf libgdk-pixbuf2.0-common all 2.38.1+dfsg-1 [316 kB] Get: 253 http://deb.debian.org/debian buster/main armhf libgdk-pixbuf2.0-0 armhf 2.38.1+dfsg-1 [161 kB] Get: 254 http://deb.debian.org/debian buster/main armhf libfribidi0 armhf 1.0.5-3.1+deb10u1 [61.7 kB] Get: 255 http://deb.debian.org/debian buster/main armhf libthai-data all 0.1.28-2 [170 kB] Get: 256 http://deb.debian.org/debian buster/main armhf libdatrie1 armhf 0.2.12-2 [35.8 kB] Get: 257 http://deb.debian.org/debian buster/main armhf libthai0 armhf 0.1.28-2 [50.7 kB] Get: 258 http://deb.debian.org/debian buster/main armhf libpango-1.0-0 armhf 1.42.4-8~deb10u1 [169 kB] Get: 259 http://deb.debian.org/debian buster/main armhf libpangoft2-1.0-0 armhf 1.42.4-8~deb10u1 [62.7 kB] Get: 260 http://deb.debian.org/debian buster/main armhf libpangocairo-1.0-0 armhf 1.42.4-8~deb10u1 [52.2 kB] Get: 261 http://deb.debian.org/debian buster/main armhf librsvg2-2 armhf 2.44.10-2.1 [955 kB] Get: 262 http://deb.debian.org/debian buster/main armhf libshine3 armhf 3.1.1-2 [22.0 kB] Get: 263 http://deb.debian.org/debian buster/main armhf libsnappy1v5 armhf 1.1.7-1 [15.2 kB] Get: 264 http://deb.debian.org/debian buster/main armhf libspeex1 armhf 1.2~rc1.2-1+b2 [51.7 kB] Get: 265 http://deb.debian.org/debian buster/main armhf libsoxr0 armhf 0.1.2-3 [51.1 kB] Get: 266 http://deb.debian.org/debian buster/main armhf libswresample3 armhf 7:4.1.4-1~deb10u1 [90.5 kB] Get: 267 http://deb.debian.org/debian buster/main armhf libogg0 armhf 1.3.2-1+b1 [17.6 kB] Get: 268 http://deb.debian.org/debian buster/main armhf libtheora0 armhf 1.1.1+dfsg.1-15 [147 kB] Get: 269 http://deb.debian.org/debian buster/main armhf libtwolame0 armhf 0.3.13-4 [45.1 kB] Get: 270 http://deb.debian.org/debian buster/main armhf libvorbis0a armhf 1.3.6-2 [83.1 kB] Get: 271 http://deb.debian.org/debian buster/main armhf libvorbisenc2 armhf 1.3.6-2 [74.0 kB] Get: 272 http://deb.debian.org/debian buster/main armhf libvpx5 armhf 1.7.0-3+deb10u1 [460 kB] Get: 273 http://deb.debian.org/debian buster/main armhf libwavpack1 armhf 5.1.0-6 [75.0 kB] Get: 274 http://deb.debian.org/debian buster/main armhf libwebpmux3 armhf 0.6.1-2 [94.1 kB] Get: 275 http://deb.debian.org/debian buster/main armhf libx264-155 armhf 2:0.155.2917+git0a84d98-2 [445 kB] Get: 276 http://deb.debian.org/debian buster/main armhf libx265-165 armhf 2.9-4 [536 kB] Get: 277 http://deb.debian.org/debian buster/main armhf libxvidcore4 armhf 2:1.3.5-1 [203 kB] Get: 278 http://deb.debian.org/debian buster/main armhf libzvbi-common all 0.2.35-16 [64.3 kB] Get: 279 http://deb.debian.org/debian buster/main armhf libzvbi0 armhf 0.2.35-16 [241 kB] Get: 280 http://deb.debian.org/debian buster/main armhf libavcodec58 armhf 7:4.1.4-1~deb10u1 [4501 kB] Get: 281 http://deb.debian.org/debian buster/main armhf libavutil-dev armhf 7:4.1.4-1~deb10u1 [357 kB] Get: 282 http://deb.debian.org/debian buster/main armhf libswresample-dev armhf 7:4.1.4-1~deb10u1 [99.3 kB] Get: 283 http://deb.debian.org/debian buster/main armhf libavcodec-dev armhf 7:4.1.4-1~deb10u1 [5023 kB] Get: 284 http://deb.debian.org/debian buster/main armhf libbluray2 armhf 1:1.1.0-1 [130 kB] Get: 285 http://deb.debian.org/debian buster/main armhf libchromaprint1 armhf 1.4.3-3 [37.0 kB] Get: 286 http://deb.debian.org/debian buster/main armhf libgme0 armhf 0.6.2-1 [107 kB] Get: 287 http://deb.debian.org/debian buster/main armhf libmpg123-0 armhf 1.25.10-2 [126 kB] Get: 288 http://deb.debian.org/debian buster/main armhf libvorbisfile3 armhf 1.3.6-2 [24.6 kB] Get: 289 http://deb.debian.org/debian buster/main armhf libopenmpt0 armhf 0.4.3-1 [546 kB] Get: 290 http://deb.debian.org/debian buster/main armhf libssh-gcrypt-4 armhf 0.8.7-1+deb10u1 [175 kB] Get: 291 http://deb.debian.org/debian buster/main armhf libavformat58 armhf 7:4.1.4-1~deb10u1 [936 kB] Get: 292 http://deb.debian.org/debian buster/main armhf libavformat-dev armhf 7:4.1.4-1~deb10u1 [1172 kB] Get: 293 http://deb.debian.org/debian buster/main armhf libboost1.67-dev armhf 1.67.0-13+deb10u1 [8388 kB] Get: 294 http://deb.debian.org/debian buster/main armhf libboost-dev armhf 1.67.0.1 [3860 B] Get: 295 http://deb.debian.org/debian buster/main armhf libcharls2 armhf 2.0.0+dfsg-1 [55.0 kB] Get: 296 http://deb.debian.org/debian buster/main armhf libcharls-dev armhf 2.0.0+dfsg-1 [8016 B] Get: 297 http://deb.debian.org/debian buster/main armhf libcupsimage2 armhf 2.2.10-6+deb10u3 [130 kB] Get: 298 http://deb.debian.org/debian buster/main armhf libcurl3-gnutls armhf 7.64.0-4+deb10u1 [295 kB] Get: 299 http://deb.debian.org/debian buster/main armhf libcurl4-gnutls-dev armhf 7.64.0-4+deb10u1 [389 kB] Get: 300 http://deb.debian.org/debian buster/main armhf libdap25 armhf 3.20.3-1 [484 kB] Get: 301 http://deb.debian.org/debian buster/main armhf libdapserver7v5 armhf 3.20.3-1 [128 kB] Get: 302 http://deb.debian.org/debian buster/main armhf libdapclient6v5 armhf 3.20.3-1 [188 kB] Get: 303 http://deb.debian.org/debian buster/main armhf libicu-dev armhf 63.1-6+deb10u1 [8940 kB] Get: 304 http://deb.debian.org/debian buster/main armhf libxml2-dev armhf 2.9.4+dfsg1-7+b3 [718 kB] Get: 305 http://deb.debian.org/debian buster/main armhf uuid-dev armhf 2.33.1-0.1 [92.6 kB] Get: 306 http://deb.debian.org/debian buster/main armhf pkg-config armhf 0.29-6 [60.7 kB] Get: 307 http://deb.debian.org/debian buster/main armhf libdap-dev armhf 3.20.3-1 [816 kB] Get: 308 http://deb.debian.org/debian buster/main armhf libdrm-omap1 armhf 2.4.97-1 [16.0 kB] Get: 309 http://deb.debian.org/debian buster/main armhf libdrm-freedreno1 armhf 2.4.97-1 [26.5 kB] Get: 310 http://deb.debian.org/debian buster/main armhf libdrm-exynos1 armhf 2.4.97-1 [19.0 kB] Get: 311 http://deb.debian.org/debian buster/main armhf libdrm-tegra0 armhf 2.4.97-1 [15.3 kB] Get: 312 http://deb.debian.org/debian buster/main armhf libdrm-dev armhf 2.4.97-1 [139 kB] Get: 313 http://deb.debian.org/debian buster/main armhf libeigen3-dev all 3.3.7-1 [850 kB] Get: 314 http://deb.debian.org/debian buster/main armhf libpopt0 armhf 1.16-12 [46.3 kB] Get: 315 http://deb.debian.org/debian buster/main armhf libepsilon1 armhf 0.9.2+dfsg-4 [37.2 kB] Get: 316 http://deb.debian.org/debian buster/main armhf libepsilon-dev armhf 0.9.2+dfsg-4 [47.5 kB] Get: 317 http://deb.debian.org/debian buster/main armhf libevent-core-2.1-6 armhf 2.1.8-stable-4 [118 kB] Get: 318 http://deb.debian.org/debian buster/main armhf libevent-pthreads-2.1-6 armhf 2.1.8-stable-4 [47.6 kB] Get: 319 http://deb.debian.org/debian buster/main armhf libexpat1-dev armhf 2.2.6-2+deb10u1 [126 kB] Get: 320 http://deb.debian.org/debian buster/main armhf libfftw3-double3 armhf 3.3.8-2 [432 kB] Get: 321 http://deb.debian.org/debian buster/main armhf libfftw3-single3 armhf 3.3.8-2 [715 kB] Get: 322 http://deb.debian.org/debian buster/main armhf libfftw3-bin armhf 3.3.8-2 [43.5 kB] Get: 323 http://deb.debian.org/debian buster/main armhf libfftw3-dev armhf 3.3.8-2 [1141 kB] Get: 324 http://deb.debian.org/debian buster/main armhf libpng-dev armhf 1.6.36-6 [286 kB] Get: 325 http://deb.debian.org/debian buster/main armhf libfreetype6-dev armhf 2.9.1-3+deb10u1 [491 kB] Get: 326 http://deb.debian.org/debian buster/main armhf libfontconfig1-dev armhf 2.13.1-2 [950 kB] Get: 327 http://deb.debian.org/debian buster/main armhf libfreexl1 armhf 1.0.5-3 [31.9 kB] Get: 328 http://deb.debian.org/debian buster/main armhf libfreexl-dev armhf 1.0.5-3 [31.1 kB] Get: 329 http://deb.debian.org/debian buster/main armhf libfyba0 armhf 4.1.1-6 [100 kB] Get: 330 http://deb.debian.org/debian buster/main armhf libfyba-dev armhf 4.1.1-6 [162 kB] Get: 331 http://deb.debian.org/debian buster/main armhf libgeos-3.7.1 armhf 3.7.1-1 [648 kB] Get: 332 http://deb.debian.org/debian buster/main armhf libgeos-c1v5 armhf 3.7.1-1 [291 kB] Get: 333 http://deb.debian.org/debian buster/main armhf proj-data all 5.2.0-1 [6986 kB] Get: 334 http://deb.debian.org/debian buster/main armhf libproj13 armhf 5.2.0-1 [187 kB] Get: 335 http://deb.debian.org/debian buster/main armhf libgeotiff2 armhf 1.4.3-1 [63.3 kB] Get: 336 http://deb.debian.org/debian buster/main armhf libgif7 armhf 5.1.4-3 [40.8 kB] Get: 337 http://deb.debian.org/debian buster/main armhf libhdf4-0-alt armhf 4.2.13-4 [239 kB] Get: 338 http://deb.debian.org/debian buster/main armhf libjson-c3 armhf 0.12.1+ds-2 [24.9 kB] Get: 339 http://deb.debian.org/debian buster/main armhf libminizip1 armhf 1.1-8+b1 [19.0 kB] Get: 340 http://deb.debian.org/debian buster/main armhf liburiparser1 armhf 0.9.1-1 [40.4 kB] Get: 341 http://deb.debian.org/debian buster/main armhf libkmlbase1 armhf 1.3.0-7 [42.0 kB] Get: 342 http://deb.debian.org/debian buster/main armhf libkmldom1 armhf 1.3.0-7 [156 kB] Get: 343 http://deb.debian.org/debian buster/main armhf libkmlengine1 armhf 1.3.0-7 [67.9 kB] Get: 344 http://deb.debian.org/debian buster/main armhf libkmlconvenience1 armhf 1.3.0-7 [44.8 kB] Get: 345 http://deb.debian.org/debian buster/main armhf libkmlregionator1 armhf 1.3.0-7 [22.4 kB] Get: 346 http://deb.debian.org/debian buster/main armhf libkmlxsd1 armhf 1.3.0-7 [30.4 kB] Get: 347 http://deb.debian.org/debian buster/main armhf libnetcdf13 armhf 1:4.6.2-1 [357 kB] Get: 348 http://deb.debian.org/debian buster/main armhf libltdl7 armhf 2.4.6-9 [387 kB] Get: 349 http://deb.debian.org/debian buster/main armhf libodbc1 armhf 2.3.6-0.1 [191 kB] Get: 350 http://deb.debian.org/debian buster/main armhf libogdi3.2 armhf 3.2.1+ds-4 [198 kB] Get: 351 http://deb.debian.org/debian buster/main armhf liblcms2-2 armhf 2.9-3 [119 kB] Get: 352 http://deb.debian.org/debian buster/main armhf libnspr4 armhf 2:4.20-1 [90.0 kB] Get: 353 http://deb.debian.org/debian buster/main armhf libnss3 armhf 2:3.42.1-1+deb10u2 [969 kB] Get: 354 http://deb.debian.org/debian buster/main armhf libpoppler82 armhf 0.71.0-5 [1381 kB] Get: 355 http://deb.debian.org/debian buster/main armhf libpq5 armhf 11.7-0+deb10u1 [152 kB] Get: 356 http://deb.debian.org/debian buster/main armhf libqhull7 armhf 2015.2-4 [176 kB] Get: 357 http://deb.debian.org/debian buster/main armhf libspatialite7 armhf 4.3.0a-5+b2 [1306 kB] Get: 358 http://deb.debian.org/debian buster/main armhf libxerces-c3.2 armhf 3.2.2+debian-1+b1 [733 kB] Get: 359 http://deb.debian.org/debian buster/main armhf odbcinst armhf 2.3.6-0.1 [47.8 kB] Get: 360 http://deb.debian.org/debian buster/main armhf odbcinst1debian2 armhf 2.3.6-0.1 [71.1 kB] Get: 361 http://deb.debian.org/debian buster/main armhf libgdal20 armhf 2.4.0+dfsg-1+b1 [5258 kB] Get: 362 http://deb.debian.org/debian buster/main armhf libgeos-dev armhf 3.7.1-1 [314 kB] Get: 363 http://deb.debian.org/debian buster/main armhf libjbig-dev armhf 2.1-3.1+b2 [28.5 kB] Get: 364 http://deb.debian.org/debian buster/main armhf liblzma-dev armhf 5.2.4-1 [204 kB] Get: 365 http://deb.debian.org/debian buster/main armhf libtiffxx5 armhf 4.1.0+git191117-2~deb10u1 [117 kB] Get: 366 http://deb.debian.org/debian buster/main armhf libtiff-dev armhf 4.1.0+git191117-2~deb10u1 [376 kB] Get: 367 http://deb.debian.org/debian buster/main armhf libgeotiff-dev armhf 1.4.3-1 [93.3 kB] Get: 368 http://deb.debian.org/debian buster/main armhf libgif-dev armhf 5.1.4-3 [43.8 kB] Get: 369 http://deb.debian.org/debian buster/main armhf libnetcdf-dev armhf 1:4.6.2-1 [82.7 kB] Get: 370 http://deb.debian.org/debian buster/main armhf libhdf4-alt-dev armhf 4.2.13-4 [344 kB] Get: 371 http://deb.debian.org/debian buster/main armhf libjson-c-dev armhf 0.12.1+ds-2 [36.0 kB] Get: 372 http://deb.debian.org/debian buster/main armhf libminizip-dev armhf 1.1-8+b1 [26.7 kB] Get: 373 http://deb.debian.org/debian buster/main armhf liburiparser-dev armhf 0.9.1-1 [21.3 kB] Get: 374 http://deb.debian.org/debian buster/main armhf libkml-dev armhf 1.3.0-7 [939 kB] Get: 375 http://deb.debian.org/debian buster/main armhf libltdl-dev armhf 2.4.6-9 [160 kB] Get: 376 http://deb.debian.org/debian buster/main armhf libproj-dev armhf 5.2.0-1 [239 kB] Get: 377 http://deb.debian.org/debian buster/main armhf libogdi3.2-dev armhf 3.2.1+ds-4 [38.2 kB] Get: 378 http://deb.debian.org/debian buster/main armhf libopenjp2-7-dev armhf 2.3.0-2+deb10u1 [44.3 kB] Get: 379 http://deb.debian.org/debian buster/main armhf libpcre16-3 armhf 2:8.39-12 [238 kB] Get: 380 http://deb.debian.org/debian buster/main armhf libpcre32-3 armhf 2:8.39-12 [231 kB] Get: 381 http://deb.debian.org/debian buster/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB] Get: 382 http://deb.debian.org/debian buster/main armhf libpcre3-dev armhf 2:8.39-12 [585 kB] Get: 383 http://deb.debian.org/debian buster/main armhf libpoppler-dev armhf 0.71.0-5 [23.7 kB] Get: 384 http://deb.debian.org/debian buster/main armhf libpoppler-private-dev armhf 0.71.0-5 [187 kB] Get: 385 http://deb.debian.org/debian buster/main armhf libpq-dev armhf 11.7-0+deb10u1 [150 kB] Get: 386 http://deb.debian.org/debian buster/main armhf libqhull-r7 armhf 2015.2-4 [175 kB] Get: 387 http://deb.debian.org/debian buster/main armhf libqhull-dev armhf 2015.2-4 [376 kB] Get: 388 http://deb.debian.org/debian buster/main armhf libsqlite3-dev armhf 3.27.2-3 [722 kB] Get: 389 http://deb.debian.org/debian buster/main armhf libspatialite-dev armhf 4.3.0a-5+b2 [1528 kB] Get: 390 http://deb.debian.org/debian buster/main armhf libwebpdemux2 armhf 0.6.1-2 [86.6 kB] Get: 391 http://deb.debian.org/debian buster/main armhf libwebp-dev armhf 0.6.1-2 [306 kB] Get: 392 http://deb.debian.org/debian buster/main armhf libxerces-c-dev armhf 3.2.2+debian-1+b1 [1529 kB] Get: 393 http://deb.debian.org/debian buster/main armhf libzstd-dev armhf 1.3.8+dfsg-3 [255 kB] Get: 394 http://deb.debian.org/debian buster/main armhf unixodbc-dev armhf 2.3.6-0.1 [240 kB] Get: 395 http://deb.debian.org/debian buster/main armhf libgdal-dev armhf 2.4.0+dfsg-1+b1 [7284 kB] Get: 396 http://deb.debian.org/debian buster/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get: 397 http://deb.debian.org/debian buster/main armhf x11proto-dev all 2018.4-4 [251 kB] Get: 398 http://deb.debian.org/debian buster/main armhf x11proto-core-dev all 2018.4-4 [3128 B] Get: 399 http://deb.debian.org/debian buster/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.5 kB] Get: 400 http://deb.debian.org/debian buster/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get: 401 http://deb.debian.org/debian buster/main armhf xtrans-dev all 1.3.5-1 [100 kB] Get: 402 http://deb.debian.org/debian buster/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get: 403 http://deb.debian.org/debian buster/main armhf libxcb1-dev armhf 1.13.1-2 [171 kB] Get: 404 http://deb.debian.org/debian buster/main armhf libx11-dev armhf 2:1.6.7-1 [771 kB] Get: 405 http://deb.debian.org/debian buster/main armhf mesa-common-dev armhf 18.3.6-2+deb10u1 [611 kB] Get: 406 http://deb.debian.org/debian buster/main armhf libglvnd-core-dev armhf 1.1.0-1 [13.2 kB] Get: 407 http://deb.debian.org/debian buster/main armhf libgles1 armhf 1.1.0-1 [13.4 kB] Get: 408 http://deb.debian.org/debian buster/main armhf libopengl0 armhf 1.1.0-1 [37.7 kB] Get: 409 http://deb.debian.org/debian buster/main armhf libglvnd-dev armhf 1.1.0-1 [5132 B] Get: 410 http://deb.debian.org/debian buster/main armhf libx11-xcb-dev armhf 2:1.6.7-1 [192 kB] Get: 411 http://deb.debian.org/debian buster/main armhf libxcb-dri3-dev armhf 1.13.1-2 [101 kB] Get: 412 http://deb.debian.org/debian buster/main armhf libxcb-render0-dev armhf 1.13.1-2 [112 kB] Get: 413 http://deb.debian.org/debian buster/main armhf libxcb-randr0-dev armhf 1.13.1-2 [114 kB] Get: 414 http://deb.debian.org/debian buster/main armhf libxcb-shape0-dev armhf 1.13.1-2 [101 kB] Get: 415 http://deb.debian.org/debian buster/main armhf libxcb-xfixes0-dev armhf 1.13.1-2 [106 kB] Get: 416 http://deb.debian.org/debian buster/main armhf libxcb-sync-dev armhf 1.13.1-2 [104 kB] Get: 417 http://deb.debian.org/debian buster/main armhf libxcb-present-dev armhf 1.13.1-2 [101 kB] Get: 418 http://deb.debian.org/debian buster/main armhf libxshmfence-dev armhf 1.3-1 [8216 B] Get: 419 http://deb.debian.org/debian buster/main armhf libxcb-dri2-0-dev armhf 1.13.1-2 [102 kB] Get: 420 http://deb.debian.org/debian buster/main armhf libxcb-glx0-dev armhf 1.13.1-2 [121 kB] Get: 421 http://deb.debian.org/debian buster/main armhf x11proto-fixes-dev all 1:2018.4-4 [3140 B] Get: 422 http://deb.debian.org/debian buster/main armhf libxfixes-dev armhf 1:5.0.3-1 [22.7 kB] Get: 423 http://deb.debian.org/debian buster/main armhf x11proto-damage-dev all 1:2018.4-4 [3140 B] Get: 424 http://deb.debian.org/debian buster/main armhf libxdamage-dev armhf 1:1.1.4-3+b3 [14.2 kB] Get: 425 http://deb.debian.org/debian buster/main armhf x11proto-xext-dev all 2018.4-4 [3128 B] Get: 426 http://deb.debian.org/debian buster/main armhf libxext-dev armhf 2:1.3.3-1+b2 [103 kB] Get: 427 http://deb.debian.org/debian buster/main armhf x11proto-xf86vidmode-dev all 2018.4-4 [3140 B] Get: 428 http://deb.debian.org/debian buster/main armhf libxxf86vm-dev armhf 1:1.1.4-1+b2 [25.1 kB] Get: 429 http://deb.debian.org/debian buster/main armhf libgl1-mesa-dev armhf 18.3.6-2+deb10u1 [48.0 kB] Get: 430 http://deb.debian.org/debian buster/main armhf libgl2ps1.4 armhf 1.4.0+dfsg1-2 [34.4 kB] Get: 431 http://deb.debian.org/debian buster/main armhf libgl2ps-dev armhf 1.4.0+dfsg1-2 [14.8 kB] Get: 432 http://deb.debian.org/debian buster/main armhf libglu1-mesa armhf 9.0.0-2.1+b3 [130 kB] Get: 433 http://deb.debian.org/debian buster/main armhf libglu1-mesa-dev armhf 9.0.0-2.1+b3 [171 kB] Get: 434 http://deb.debian.org/debian buster/main armhf libgs9-common all 9.27~dfsg-2+deb10u3 [5136 kB] Get: 435 http://deb.debian.org/debian buster/main armhf libidn11 armhf 1.33-2.2 [113 kB] Get: 436 http://deb.debian.org/debian buster/main armhf libijs-0.35 armhf 0.35-14 [16.7 kB] Get: 437 http://deb.debian.org/debian buster/main armhf libjbig2dec0 armhf 0.16-1 [54.5 kB] Get: 438 http://deb.debian.org/debian buster/main armhf libpaper1 armhf 1.1.28 [20.5 kB] Get: 439 http://deb.debian.org/debian buster/main armhf libgs9 armhf 9.27~dfsg-2+deb10u3 [1900 kB] Get: 440 http://deb.debian.org/debian buster/main armhf libharfbuzz-icu0 armhf 2.3.1-1 [833 kB] Get: 441 http://deb.debian.org/debian buster/main armhf libhwloc5 armhf 1.11.12-3 [87.6 kB] Get: 442 http://deb.debian.org/debian buster/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB] Get: 443 http://deb.debian.org/debian buster/main armhf ocl-icd-libopencl1 armhf 2.2.12-2 [35.6 kB] Get: 444 http://deb.debian.org/debian buster/main armhf libhwloc-plugins armhf 1.11.12-3 [15.7 kB] Get: 445 http://deb.debian.org/debian buster/main armhf libpmix2 armhf 3.1.2-3 [449 kB] Get: 446 http://deb.debian.org/debian buster/main armhf libopenmpi3 armhf 3.1.3-11 [1890 kB] Get: 447 http://deb.debian.org/debian buster/main armhf libhdf5-openmpi-103 armhf 1.10.4+repack-10 [1334 kB] Get: 448 http://deb.debian.org/debian buster/main armhf openmpi-common all 3.1.3-11 [165 kB] Get: 449 http://deb.debian.org/debian buster/main armhf libnl-3-dev armhf 3.4.0-1 [96.9 kB] Get: 450 http://deb.debian.org/debian buster/main armhf libnl-route-3-dev armhf 3.4.0-1 [162 kB] Get: 451 http://deb.debian.org/debian buster/main armhf libibverbs-dev armhf 22.1-1 [151 kB] Get: 452 http://deb.debian.org/debian buster/main armhf libhwloc-dev armhf 1.11.12-3 [153 kB] Get: 453 http://deb.debian.org/debian buster/main armhf openmpi-bin armhf 3.1.3-11 [198 kB] Get: 454 http://deb.debian.org/debian buster/main armhf libopenmpi-dev armhf 3.1.3-11 [964 kB] Get: 455 http://deb.debian.org/debian buster/main armhf libhdf5-openmpi-dev armhf 1.10.4+repack-10 [2482 kB] Get: 456 http://deb.debian.org/debian buster/main armhf mpi-default-dev armhf 1.13 [5476 B] Get: 457 http://deb.debian.org/debian buster/main armhf libhdf5-mpi-dev armhf 1.10.4+repack-10 [27.3 kB] Get: 458 http://deb.debian.org/debian buster/main armhf libice-dev armhf 2:1.0.9-2 [61.9 kB] Get: 459 http://deb.debian.org/debian buster/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 460 http://deb.debian.org/debian buster/main armhf libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] Get: 461 http://deb.debian.org/debian buster/main armhf libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 462 http://deb.debian.org/debian buster/main armhf libjsoncpp-dev armhf 1.7.4-3 [79.7 kB] Get: 463 http://deb.debian.org/debian buster/main armhf libkpathsea6 armhf 2018.20181218.49446-1 [157 kB] Get: 464 http://deb.debian.org/debian buster/main armhf libnetcdf-c++4 armhf 4.2-11 [28.7 kB] Get: 465 http://deb.debian.org/debian buster/main armhf libnetcdf-cxx-legacy-dev armhf 4.2-11 [51.8 kB] Get: 466 http://deb.debian.org/debian buster/main armhf libogg-dev armhf 1.3.2-1+b1 [196 kB] Get: 467 http://deb.debian.org/debian buster/main armhf libpaper-utils armhf 1.1.28 [17.6 kB] Get: 468 http://deb.debian.org/debian buster/main armhf libpotrace0 armhf 1.15-1 [23.9 kB] Get: 469 http://deb.debian.org/debian buster/main armhf libptexenc1 armhf 2018.20181218.49446-1 [58.1 kB] Get: 470 http://deb.debian.org/debian buster/main armhf libpython2.7 armhf 2.7.16-2+deb10u1 [892 kB] Get: 471 http://deb.debian.org/debian buster/main armhf libpython2.7-dev armhf 2.7.16-2+deb10u1 [31.0 MB] Get: 472 http://deb.debian.org/debian buster/main armhf libpython2-dev armhf 2.7.16-1 [20.9 kB] Get: 473 http://deb.debian.org/debian buster/main armhf libpython-dev armhf 2.7.16-1 [20.9 kB] Get: 474 http://deb.debian.org/debian buster/main armhf libqt5opengl5 armhf 5.11.3+dfsg1-1+deb10u3 [139 kB] Get: 475 http://deb.debian.org/debian buster/main armhf libsm-dev armhf 2:1.2.3-1 [36.1 kB] Get: 476 http://deb.debian.org/debian buster/main armhf libsodium23 armhf 1.0.17-1 [144 kB] Get: 477 http://deb.debian.org/debian buster/main armhf libswscale5 armhf 7:4.1.4-1~deb10u1 [169 kB] Get: 478 http://deb.debian.org/debian buster/main armhf libswscale-dev armhf 7:4.1.4-1~deb10u1 [184 kB] Get: 479 http://deb.debian.org/debian buster/main armhf libsymspg1 armhf 1.12.2-1 [75.1 kB] Get: 480 http://deb.debian.org/debian buster/main armhf libsymspg-dev armhf 1.12.2-1 [82.9 kB] Get: 481 http://deb.debian.org/debian buster/main armhf libsynctex2 armhf 2018.20181218.49446-1 [67.4 kB] Get: 482 http://deb.debian.org/debian buster/main armhf libtcl8.6 armhf 8.6.9+dfsg-2 [897 kB] Get: 483 http://deb.debian.org/debian buster/main armhf libteckit0 armhf 2.5.8+ds2-5 [246 kB] Get: 484 http://deb.debian.org/debian buster/main armhf libtexlua52 armhf 2018.20181218.49446-1 [86.7 kB] Get: 485 http://deb.debian.org/debian buster/main armhf libtexlua53 armhf 2018.20181218.49446-1 [97.8 kB] Get: 486 http://deb.debian.org/debian buster/main armhf libtexluajit2 armhf 2018.20181218.49446-1 [201 kB] Get: 487 http://deb.debian.org/debian buster/main armhf libtheora-dev armhf 1.1.1+dfsg.1-15 [166 kB] Get: 488 http://deb.debian.org/debian buster/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 489 http://deb.debian.org/debian buster/main armhf libtk8.6 armhf 8.6.9-2 [678 kB] Get: 490 http://deb.debian.org/debian buster/main armhf libvoro++1 armhf 0.4.6+dfsg1-3 [97.7 kB] Get: 491 http://deb.debian.org/debian buster/main armhf libxt6 armhf 1:1.1.5-1+b3 [159 kB] Get: 492 http://deb.debian.org/debian buster/main armhf libvtk6.3 armhf 6.3.0+dfsg2-2+b5 [28.4 MB] Get: 493 http://deb.debian.org/debian buster/main armhf libvtk6.3-qt armhf 6.3.0+dfsg2-2+b5 [223 kB] Get: 494 http://deb.debian.org/debian buster/main armhf libvtk6-jni armhf 6.3.0+dfsg2-2+b5 [3894 kB] Get: 495 http://deb.debian.org/debian buster/main armhf libvtk6-java armhf 6.3.0+dfsg2-2+b5 [3306 kB] Get: 496 http://deb.debian.org/debian buster/main armhf libxrender-dev armhf 1:0.9.10-1 [37.8 kB] Get: 497 http://deb.debian.org/debian buster/main armhf libxft-dev armhf 2.3.2-2 [62.3 kB] Get: 498 http://deb.debian.org/debian buster/main armhf x11proto-scrnsaver-dev all 2018.4-4 [3136 B] Get: 499 http://deb.debian.org/debian buster/main armhf libxss-dev armhf 1:1.2.3-1 [23.1 kB] Get: 500 http://deb.debian.org/debian buster/main armhf libxt-dev armhf 1:1.1.5-1+b3 [403 kB] Get: 501 http://deb.debian.org/debian buster/main armhf python-cbor armhf 1.0.0-1+b1 [19.8 kB] Get: 502 http://deb.debian.org/debian buster/main armhf python-concurrent.futures all 3.2.0-2 [36.6 kB] Get: 503 http://deb.debian.org/debian buster/main armhf python-configparser all 3.5.0b2-1 [59.2 kB] Get: 504 http://deb.debian.org/debian buster/main armhf python-future all 0.16.0-1 [348 kB] Get: 505 http://deb.debian.org/debian buster/main armhf python-lz4 armhf 1.1.0+dfsg-1 [23.5 kB] Get: 506 http://deb.debian.org/debian buster/main armhf python-cffi-backend armhf 1.12.2-1 [69.6 kB] Get: 507 http://deb.debian.org/debian buster/main armhf python-six all 1.12.0-1 [15.7 kB] Get: 508 http://deb.debian.org/debian buster/main armhf python-nacl armhf 1.3.0-2 [44.7 kB] Get: 509 http://deb.debian.org/debian buster/main armhf python-asn1crypto all 0.24.0-1 [78.1 kB] Get: 510 http://deb.debian.org/debian buster/main armhf python-enum34 all 1.1.6-2 [35.3 kB] Get: 511 http://deb.debian.org/debian buster/main armhf python-ipaddress all 1.0.17-1 [18.1 kB] Get: 512 http://deb.debian.org/debian buster/main armhf python-cryptography armhf 2.6.1-3+deb10u2 [189 kB] Get: 513 http://deb.debian.org/debian buster/main armhf python-openssl all 19.0.0-1 [52.0 kB] Get: 514 http://deb.debian.org/debian buster/main armhf python-pyqrcode all 1.2.1-2 [30.1 kB] Get: 515 http://deb.debian.org/debian buster/main armhf python-attr all 18.2.0-1 [37.2 kB] Get: 516 http://deb.debian.org/debian buster/main armhf python-pyasn1 all 0.4.2-3 [57.6 kB] Get: 517 http://deb.debian.org/debian buster/main armhf python-pyasn1-modules all 0.2.1-0.2 [34.4 kB] Get: 518 http://deb.debian.org/debian buster/main armhf python-service-identity all 16.0.0-2 [9350 B] Get: 519 http://deb.debian.org/debian buster/main armhf python-snappy armhf 0.5.3-1 [16.0 kB] Get: 520 http://deb.debian.org/debian buster/main armhf python-trie all 0.2+ds-1 [7034 B] Get: 521 http://deb.debian.org/debian buster/main armhf python-trollius all 2.1~b1-5 [95.0 kB] Get: 522 http://deb.debian.org/debian buster/main armhf python-twisted-bin armhf 18.9.0-3 [21.6 kB] Get: 523 http://deb.debian.org/debian buster/main armhf python-pkg-resources all 40.8.0-1 [182 kB] Get: 524 http://deb.debian.org/debian buster/main armhf python-zope.interface armhf 4.3.2-1+b2 [88.3 kB] Get: 525 http://deb.debian.org/debian buster/main armhf python-automat all 0.6.0-1 [25.0 kB] Get: 526 http://deb.debian.org/debian buster/main armhf python-constantly all 15.1.0-1 [7902 B] Get: 527 http://deb.debian.org/debian buster/main armhf python-hyperlink all 17.3.1-2 [29.2 kB] Get: 528 http://deb.debian.org/debian buster/main armhf python-incremental all 16.10.1-3 [14.4 kB] Get: 529 http://deb.debian.org/debian buster/main armhf python-twisted-core all 18.9.0-3 [1997 kB] Get: 530 http://deb.debian.org/debian buster/main armhf python-twisted all 18.9.0-3 [13.4 kB] Get: 531 http://deb.debian.org/debian buster/main armhf python-txaio all 2.10.0-1 [18.7 kB] Get: 532 http://deb.debian.org/debian buster/main armhf python-u-msgpack all 2.1-1 [7226 B] Get: 533 http://deb.debian.org/debian buster/main armhf python-ubjson armhf 0.12.0-1 [30.1 kB] Get: 534 http://deb.debian.org/debian buster/main armhf python-wsaccel armhf 0.6.2-1+b1 [35.5 kB] Get: 535 http://deb.debian.org/debian buster/main armhf python-autobahn all 17.10.1+dfsg1-3+deb10u1 [163 kB] Get: 536 http://deb.debian.org/debian buster/main armhf mpi-default-bin armhf 1.13 [4672 B] Get: 537 http://deb.debian.org/debian buster/main armhf python-mpi4py armhf 2.0.0-3+b3 [364 kB] Get: 538 http://deb.debian.org/debian buster/main armhf python-vtk6 armhf 6.3.0+dfsg2-2+b5 [252 kB] Get: 539 http://deb.debian.org/debian buster/main armhf tcl8.6 armhf 8.6.9+dfsg-2 [123 kB] Get: 540 http://deb.debian.org/debian buster/main armhf tcl8.6-dev armhf 8.6.9+dfsg-2 [917 kB] Get: 541 http://deb.debian.org/debian buster/main armhf tcl armhf 8.6.9+1 [5636 B] Get: 542 http://deb.debian.org/debian buster/main armhf tcl-dev armhf 8.6.9+1 [8192 B] Get: 543 http://deb.debian.org/debian buster/main armhf tcl-vtk6 armhf 6.3.0+dfsg2-2+b5 [135 kB] Get: 544 http://deb.debian.org/debian buster/main armhf tk8.6 armhf 8.6.9-2 [71.9 kB] Get: 545 http://deb.debian.org/debian buster/main armhf tk8.6-dev armhf 8.6.9-2 [694 kB] Get: 546 http://deb.debian.org/debian buster/main armhf tk armhf 8.6.9+1 [5676 B] Get: 547 http://deb.debian.org/debian buster/main armhf tk-dev armhf 8.6.9+1 [5500 B] Get: 548 http://deb.debian.org/debian buster/main armhf vtk6 armhf 6.3.0+dfsg2-2+b5 [160 kB] Get: 549 http://deb.debian.org/debian buster/main armhf libvtk6-dev armhf 6.3.0+dfsg2-2+b5 [2149 kB] Get: 550 http://deb.debian.org/debian buster/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.7 kB] Get: 551 http://deb.debian.org/debian buster/main armhf libxaw7 armhf 2:1.0.13-1+b2 [167 kB] Get: 552 http://deb.debian.org/debian buster/main armhf libxxhash0 armhf 0.6.5-2 [10.2 kB] Get: 553 http://deb.debian.org/debian buster/main armhf libzzip-0-13 armhf 0.13.62-3.2 [51.6 kB] Get: 554 http://deb.debian.org/debian buster/main armhf opencl-c-headers all 2.2~2019.01.17-g49f07d3-1 [31.3 kB] Get: 555 http://deb.debian.org/debian buster/main armhf ocl-icd-opencl-dev armhf 2.2.12-2 [10.7 kB] Get: 556 http://deb.debian.org/debian buster/main armhf t1utils armhf 1.41-3 [54.4 kB] Get: 557 http://deb.debian.org/debian buster/main armhf texlive-binaries armhf 2018.20181218.49446-1 [8656 kB] Get: 558 http://deb.debian.org/debian buster/main armhf xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 559 http://deb.debian.org/debian buster/main armhf texlive-base all 2018.20190227-2 [19.7 MB] Get: 560 http://deb.debian.org/debian buster/main armhf texlive-latex-base all 2018.20190227-2 [984 kB] Get: 561 http://deb.debian.org/debian buster/main armhf texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get: 562 http://deb.debian.org/debian buster/main armhf voro++-dev armhf 0.4.6+dfsg1-3 [131 kB] Fetched 350 MB in 1min 7s (5237 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:armhf. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_armhf.deb ... Unpacking libpython2.7-minimal:armhf (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_armhf.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_armhf.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_armhf.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:armhf. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_armhf.deb ... Unpacking libssl1.1:armhf (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_armhf.deb ... Unpacking libexpat1:armhf (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:armhf. Preparing to unpack .../14-libreadline7_7.0-5_armhf.deb ... Unpacking libreadline7:armhf (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:armhf. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_armhf.deb ... Unpacking libpython2.7-stdlib:armhf (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_armhf.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:armhf. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_armhf.deb ... Unpacking libpython2-stdlib:armhf (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:armhf. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_armhf.deb ... Unpacking libpython-stdlib:armhf (2.7.16-1) ... Setting up libpython2.7-minimal:armhf (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20397 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_armhf.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20430 files and directories currently installed.) Preparing to unpack .../000-python_2.7.16-1_armhf.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package libglvnd0:armhf. Preparing to unpack .../001-libglvnd0_1.1.0-1_armhf.deb ... Unpacking libglvnd0:armhf (1.1.0-1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../002-libdrm-common_2.4.97-1_all.deb ... Unpacking libdrm-common (2.4.97-1) ... Selecting previously unselected package libdrm2:armhf. Preparing to unpack .../003-libdrm2_2.4.97-1_armhf.deb ... Unpacking libdrm2:armhf (2.4.97-1) ... Selecting previously unselected package libwayland-server0:armhf. Preparing to unpack .../004-libwayland-server0_1.16.0-1_armhf.deb ... Unpacking libwayland-server0:armhf (1.16.0-1) ... Selecting previously unselected package libgbm1:armhf. Preparing to unpack .../005-libgbm1_18.3.6-2+deb10u1_armhf.deb ... Unpacking libgbm1:armhf (18.3.6-2+deb10u1) ... Selecting previously unselected package libglapi-mesa:armhf. Preparing to unpack .../006-libglapi-mesa_18.3.6-2+deb10u1_armhf.deb ... Unpacking libglapi-mesa:armhf (18.3.6-2+deb10u1) ... Selecting previously unselected package libwayland-client0:armhf. Preparing to unpack .../007-libwayland-client0_1.16.0-1_armhf.deb ... Unpacking libwayland-client0:armhf (1.16.0-1) ... Selecting previously unselected package libx11-xcb1:armhf. Preparing to unpack .../008-libx11-xcb1_2%3a1.6.7-1_armhf.deb ... Unpacking libx11-xcb1:armhf (2:1.6.7-1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../009-libxau6_1%3a1.0.8-1+b2_armhf.deb ... Unpacking libxau6:armhf (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../010-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../011-libxcb1_1.13.1-2_armhf.deb ... Unpacking libxcb1:armhf (1.13.1-2) ... Selecting previously unselected package libxcb-dri2-0:armhf. Preparing to unpack .../012-libxcb-dri2-0_1.13.1-2_armhf.deb ... Unpacking libxcb-dri2-0:armhf (1.13.1-2) ... Selecting previously unselected package libxcb-dri3-0:armhf. Preparing to unpack .../013-libxcb-dri3-0_1.13.1-2_armhf.deb ... Unpacking libxcb-dri3-0:armhf (1.13.1-2) ... Selecting previously unselected package libxcb-present0:armhf. Preparing to unpack .../014-libxcb-present0_1.13.1-2_armhf.deb ... Unpacking libxcb-present0:armhf (1.13.1-2) ... Selecting previously unselected package libxcb-sync1:armhf. Preparing to unpack .../015-libxcb-sync1_1.13.1-2_armhf.deb ... Unpacking libxcb-sync1:armhf (1.13.1-2) ... Selecting previously unselected package libxcb-xfixes0:armhf. Preparing to unpack .../016-libxcb-xfixes0_1.13.1-2_armhf.deb ... Unpacking libxcb-xfixes0:armhf (1.13.1-2) ... Selecting previously unselected package libxshmfence1:armhf. Preparing to unpack .../017-libxshmfence1_1.3-1_armhf.deb ... Unpacking libxshmfence1:armhf (1.3-1) ... Selecting previously unselected package libegl-mesa0:armhf. Preparing to unpack .../018-libegl-mesa0_18.3.6-2+deb10u1_armhf.deb ... Unpacking libegl-mesa0:armhf (18.3.6-2+deb10u1) ... Selecting previously unselected package libegl1:armhf. Preparing to unpack .../019-libegl1_1.1.0-1_armhf.deb ... Unpacking libegl1:armhf (1.1.0-1) ... Selecting previously unselected package libgles2:armhf. Preparing to unpack .../020-libgles2_1.1.0-1_armhf.deb ... Unpacking libgles2:armhf (1.1.0-1) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../021-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ... Selecting previously unselected package libcap2:armhf. Preparing to unpack .../022-libcap2_1%3a2.25-2_armhf.deb ... Unpacking libcap2:armhf (1:2.25-2) ... Selecting previously unselected package libcap2-bin. Preparing to unpack .../023-libcap2-bin_1%3a2.25-2_armhf.deb ... Unpacking libcap2-bin (1:2.25-2) ... Selecting previously unselected package libgstreamer1.0-0:armhf. Preparing to unpack .../024-libgstreamer1.0-0_1.14.4-1_armhf.deb ... Unpacking libgstreamer1.0-0:armhf (1.14.4-1) ... Selecting previously unselected package liborc-0.4-0:armhf. Preparing to unpack .../025-liborc-0.4-0_1%3a0.4.28-3.1_armhf.deb ... Unpacking liborc-0.4-0:armhf (1:0.4.28-3.1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../026-iso-codes_4.2-1_all.deb ... Unpacking iso-codes (4.2-1) ... Selecting previously unselected package libgstreamer-plugins-base1.0-0:armhf. Preparing to unpack .../027-libgstreamer-plugins-base1.0-0_1.14.4-2_armhf.deb ... Unpacking libgstreamer-plugins-base1.0-0:armhf (1.14.4-2) ... Selecting previously unselected package libhyphen0:armhf. Preparing to unpack .../028-libhyphen0_2.8.8-7_armhf.deb ... Unpacking libhyphen0:armhf (2.8.8-7) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../029-libicu63_63.1-6+deb10u1_armhf.deb ... Unpacking libicu63:armhf (63.1-6+deb10u1) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../030-libjpeg62-turbo_1%3a1.5.2-2+b1_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:1.5.2-2+b1) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../031-libpng16-16_1.6.36-6_armhf.deb ... Unpacking libpng16-16:armhf (1.6.36-6) ... Selecting previously unselected package libdouble-conversion1:armhf. Preparing to unpack .../032-libdouble-conversion1_3.1.0-3_armhf.deb ... Unpacking libdouble-conversion1:armhf (3.1.0-3) ... Selecting previously unselected package libpcre2-16-0:armhf. Preparing to unpack .../033-libpcre2-16-0_10.32-5_armhf.deb ... Unpacking libpcre2-16-0:armhf (10.32-5) ... Selecting previously unselected package libqt5core5a:armhf. Preparing to unpack .../034-libqt5core5a_5.11.3+dfsg1-1+deb10u3_armhf.deb ... Unpacking libqt5core5a:armhf (5.11.3+dfsg1-1+deb10u3) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../035-libfreetype6_2.9.1-3+deb10u1_armhf.deb ... Unpacking libfreetype6:armhf (2.9.1-3+deb10u1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../036-sensible-utils_0.0.12_all.deb ... 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Setting up libpixman-1-0:armhf (0.36.0-1) ... Setting up libwayland-server0:armhf (1.16.0-1) ... Setting up lsb-base (10.2019051400) ... Setting up libx11-xcb1:armhf (2:1.6.7-1) ... Setting up libjson-c3:armhf (0.12.1+ds-2) ... Setting up libpciaccess0:armhf (0.14-1) ... Setting up mysql-common (5.8+1.0.5) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libxau6:armhf (1:1.0.8-1+b2) ... Setting up libkeyutils1:armhf (1.6-6) ... Setting up libpsl5:armhf (0.20.2-2) ... Setting up libgnutls-openssl27:armhf (3.6.7-4+deb10u3) ... Setting up libfftw3-single3:armhf (3.3.8-2) ... Setting up libsodium23:armhf (1.0.17-1) ... Setting up libmpg123-0:armhf (1.25.10-2) ... Setting up libogg0:armhf (1.3.2-1+b1) ... Setting up libzstd-dev:armhf (1.3.8+dfsg-3) ... Setting up mime-support (3.62) ... Setting up libspeex1:armhf (1.2~rc1.2-1+b2) ... Setting up proj-data (5.2.0-1) ... Setting up libshine3:armhf (3.1.1-2) ... Setting up libtexlua52:armhf (2018.20181218.49446-1) ... Setting up libglvnd-core-dev:armhf (1.1.0-1) ... Setting up libpcre16-3:armhf (2:8.39-12) ... Setting up hdf5-helpers (1.10.4+repack-10) ... Setting up libtwolame0:armhf (0.3.13-4) ... Setting up libhyphen0:armhf (2.8.8-7) ... Setting up libdatrie1:armhf (0.2.12-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libgsm1:armhf (1.0.18-2) ... Setting up libx264-155:armhf (2:0.155.2917+git0a84d98-2) ... Setting up libcharls2:armhf (2.0.0+dfsg-1) ... Setting up libminizip1:armhf (1.1-8+b1) ... Setting up libtexlua53:armhf (2018.20181218.49446-1) ... Setting up libsoxr0:armhf (0.1.2-3) ... Setting up libx265-165:armhf (2.9-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libglvnd0:armhf (1.1.0-1) ... Setting up libjson-c-dev:armhf (0.12.1+ds-2) ... Setting up libssl1.1:armhf (1.1.1d-0+deb10u3) ... Setting up libijs-0.35:armhf (0.35-14) ... Setting up libprocps7:armhf (2:3.3.15-2) ... Setting up libaom0:armhf (1.0.0-3) ... Setting up libtexluajit2:armhf (2018.20181218.49446-1) ... Setting up libbrotli1:armhf (1.0.7-2) ... Setting up libgdk-pixbuf2.0-common (2.38.1+dfsg-1) ... Setting up libcodec2-0.8.1:armhf (0.8.1-2) ... Setting up libproj13:armhf (5.2.0-1) ... Setting up libsymspg1:armhf (1.12.2-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.5.0-3) ... Setting up libnghttp2-14:armhf (1.36.0-2+deb10u1) ... Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up xkb-data (2.26-2) ... Setting up libqhull7:armhf (2015.2-4) ... Setting up libzzip-0-13:armhf (0.13.62-3.2) ... 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Setting up mariadb-common (1:10.3.22-0+deb10u1) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libminizip-dev:armhf (1.1-8+b1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up autotools-dev (20180224.1) ... Setting up libgmpxx4ldbl:armhf (2:6.1.2+dfsg-4) ... Setting up libuv1:armhf (1.24.1-1) ... Setting up libgles2:armhf (1.1.0-1) ... Setting up libexpat1-dev:armhf (2.2.6-2+deb10u1) ... Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ... Setting up libva2:armhf (2.4.0-1) ... Setting up libsqlite3-dev:armhf (3.27.2-3) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ... Setting up libnspr4:armhf (2:4.20-1) ... Setting up libjbig2dec0:armhf (0.16-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Setting up libidn11:armhf (1.33-2.2) ... Setting up libteckit0:armhf (2.5.8+ds2-5) ... Setting up htmldoc-common (1.9.3-1) ... Setting up uuid-dev:armhf (2.33.1-0.1) ... Setting up libavahi-common-data:armhf (0.7-4+b1) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libgles1:armhf (1.1.0-1) ... Setting up libdbus-1-3:armhf (1.12.16-1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libfribidi0:armhf (1.0.5-3.1+deb10u1) ... Setting up libopus0:armhf (1.3-1) ... Setting up t1utils (1.41-3) ... Setting up libpng16-16:armhf (1.6.36-6) ... Setting up libproj-dev:armhf (5.2.0-1) ... Setting up libpcre32-3:armhf (2:8.39-12) ... Setting up libvorbis0a:armhf (1.3.6-2) ... Setting up liborc-0.4-0:armhf (1:0.4.28-3.1) ... Setting up libtcl8.6:armhf (8.6.9+dfsg-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up icu-devtools (63.1-6+deb10u1) ... Setting up libgeos-c1v5:armhf (3.7.1-1) ... Setting up pkg-config (0.29-6) ... Setting up libmariadb3:armhf (1:10.3.22-0+deb10u1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libgnutlsxx28:armhf (3.6.7-4+deb10u3) ... Setting up libsensors5:armhf (1:3.5.0-3) ... Setting up libk5crypto3:armhf (1.17-3) ... Setting up libltdl7:armhf (2.4.6-9) ... Setting up opencl-c-headers (2.2~2019.01.17-g49f07d3-1) ... Setting up libfftw3-double3:armhf (3.3.8-2) ... Setting up libidn2-dev:armhf (2.0.5-1+deb10u1) ... Setting up libglapi-mesa:armhf (18.3.6-2+deb10u1) ... Setting up libkpathsea6:armhf (2018.20181218.49446-1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-1+deb10u1) ... Setting up libevent-core-2.1-6:armhf (2.1.8-stable-4) ... Setting up libgfortran5:armhf (8.3.0-6) ... Setting up libmtdev1:armhf (1.1.5-1+b1) ... Setting up libevent-2.1-6:armhf (2.1.8-stable-4) ... Setting up libhdf4-0-alt (4.2.13-4) ... Setting up liblzma-dev:armhf (5.2.4-1) ... Setting up libgif7:armhf (5.1.4-3) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Setting up liburiparser1:armhf (0.9.1-1) ... Setting up libfreexl1:armhf (1.0.5-3) ... Setting up sensible-utils (0.0.12) ... Setting up ocl-icd-libopencl1:armhf (2.2.12-2) ... Setting up libgif-dev (5.1.4-3) ... Setting up libxshmfence1:armhf (1.3-1) ... Setting up librhash0:armhf (1.3.8-1) ... Setting up libwavpack1:armhf (5.1.0-6) ... Setting up libfyba0:armhf (4.1.1-6) ... Setting up libxxhash0:armhf (0.6.5-2) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libkmlbase1:armhf (1.3.0-7) ... Setting up libnl-3-200:armhf (3.4.0-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up fonts-lmodern (2.004.5-6) ... Setting up libopenjp2-7:armhf (2.3.0-2+deb10u1) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:armhf (1.8.0-2.1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:armhf (1.17-3) ... Setting up libboost-dev:armhf (1.67.0.1) ... Setting up libtiff5:armhf (4.1.0+git191117-2~deb10u1) ... Setting up libqhull-r7:armhf (2015.2-4) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libvoro++1 (0.4.6+dfsg1-3) ... Setting up libtasn1-6-dev:armhf (4.13-3) ... Setting up libwebpmux3:armhf (0.6.1-2) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up libevdev2:armhf (1.6.0+dfsg-1) ... Setting up readline-common (7.0-5) ... Setting up libicu-dev:armhf (63.1-6+deb10u1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up libdouble-conversion1:armhf (3.1.0-3) ... Setting up iso-codes (4.2-1) ... Setting up libgudev-1.0-0:armhf (232-2) ... Setting up libzvbi-common (0.2.35-16) ... Setting up libgstreamer1.0-0:armhf (1.14.4-1) ... Setcap worked! gst-ptp-helper is not suid! Setting up libp11-kit-dev:armhf (0.23.15-2) ... Setting up libmp3lame0:armhf (3.100-2+b1) ... Setting up libvpx5:armhf (1.7.0-3+deb10u1) ... Setting up libsz2:armhf (1.0.2-1) ... Setting up libvorbisenc2:armhf (1.3.6-2) ... Setting up libjsoncpp1:armhf (1.7.4-3) ... Setting up libsynctex2:armhf (2018.20181218.49446-1) ... Setting up libreadline7:armhf (7.0-5) ... Setting up libkmlxsd1:armhf (1.3.0-7) ... Setting up libtiffxx5:armhf (4.1.0+git191117-2~deb10u1) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libpopt0:armhf (1.16-12) ... Setting up libwacom-common (0.32-1) ... Setting up libxkbcommon0:armhf (0.8.2-1) ... Setting up libkmldom1:armhf (1.3.0-7) ... Setting up libpotrace0:armhf (1.15-1) ... Setting up libwayland-client0:armhf (1.16.0-1) ... Setting up libspatialite7:armhf (4.3.0a-5+b2) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libzvbi0:armhf (0.2.35-16) ... Setting up libgfortran-8-dev:armhf (8.3.0-6) ... Setting up libevent-pthreads-2.1-6:armhf (2.1.8-stable-4) ... Setting up libice6:armhf (2:1.0.9-2) ... Setting up libjsoncpp-dev:armhf (1.7.4-3) ... Setting up libcharls-dev:armhf (2.0.0+dfsg-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libogdi3.2 (3.2.1+ds-4) ... Setting up tcl8.6 (8.6.9+dfsg-2) ... Setting up libxcb1:armhf (1.13.1-2) ... Setting up libgmp-dev:armhf (2:6.1.2+dfsg-4) ... Setting up libxcb-xfixes0:armhf (1.13.1-2) ... Setting up libkmlengine1:armhf (1.3.0-7) ... Setting up libxau-dev:armhf (1:1.0.8-1+b2) ... Setting up libsymspg-dev:armhf (1.12.2-1) ... Setting up nettle-dev:armhf (3.4.1-1) ... Setting up libwoff1:armhf (1.0.2-1) ... Setting up libkmlconvenience1:armhf (1.3.0-7) ... Setting up libice-dev:armhf (2:1.0.9-2) ... Setting up voro++-dev (0.4.6+dfsg1-3) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:armhf (3.3.3-4+deb10u1) ... Setting up libxcb-render0:armhf (1.13.1-2) ... Setting up libxshmfence-dev:armhf (1.3-1) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libpcre3-dev:armhf (2:8.39-12) ... Setting up libfreexl-dev:armhf (1.0.5-3) ... Setting up libhwloc5:armhf (1.11.12-3) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libfyba-dev:armhf (4.1.1-6) ... Setting up libxcb-glx0:armhf (1.13.1-2) ... Setting up libwebpdemux2:armhf (0.6.1-2) ... Setting up tcl8.6-dev:armhf (8.6.9+dfsg-2) ... Setting up libedit2:armhf (3.1-20181209-1) ... Setting up libpng-dev:armhf (1.6.36-6) ... Setting up libxcb-keysyms1:armhf (0.4.0-1+b2) ... Setting up libaec-dev:armhf (1.0.2-1) ... Setting up libxcb-shape0:armhf (1.13.1-2) ... Setting up libavahi-common3:armhf (0.7-4+b1) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up libjbig-dev:armhf (2.1-3.1+b2) ... Setting up libldap-2.4-2:armhf (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libdap25:armhf (3.20.3-1) ... Setting up libxcb-render-util0:armhf (0.3.9-1+b1) ... Setting up libgstreamer-plugins-base1.0-0:armhf (1.14.4-2) ... Setting up libnss3:armhf (2:3.42.1-1+deb10u2) ... Setting up libxcb-shm0:armhf (1.13.1-2) ... Setting up libxcb-icccm4:armhf (0.4.1-1.1) ... Setting up libxcb-util0:armhf (0.3.8-3+b2) ... Setting up libepsilon1:armhf (0.9.2+dfsg-4) ... Setting up libhwloc-plugins:armhf (1.11.12-3) ... Setting up libdapserver7v5:armhf (3.20.3-1) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxcb-xkb1:armhf (1.13.1-2) ... Setting up libxcb-image0:armhf (0.4.0-1+b2) ... Setting up liburiparser-dev (0.9.1-1) ... Setting up libnl-route-3-200:armhf (3.4.0-1) ... Setting up libpython2.7-stdlib:armhf (2.7.16-2+deb10u1) ... Setting up libxcb-present0:armhf (1.13.1-2) ... Setting up libthai0:armhf (0.1.28-2) ... Setting up libvorbisfile3:armhf (1.3.6-2) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up libgeotiff2:armhf (1.4.3-1) ... Setting up libxml2-dev:armhf (2.9.4+dfsg1-7+b3) ... Setting up libblas3:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libwebp-dev:armhf (0.6.1-2) ... Setting up libxcb-xinerama0:armhf (1.13.1-2) ... Setting up libunbound8:armhf (1.9.0-2+deb10u1) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up libptexenc1:armhf (2018.20181218.49446-1) ... Setting up libfreetype6:armhf (2.9.1-3+deb10u1) ... Setting up libtiff-dev:armhf (4.1.0+git191117-2~deb10u1) ... Setting up libopenjp2-7-dev (2.3.0-2+deb10u1) ... Setting up libxcb-sync1:armhf (1.13.1-2) ... Setting up libkmlregionator1:armhf (1.3.0-7) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libgeos-dev (3.7.1-1) ... Setting up libhdf5-103:armhf (1.10.4+repack-10) ... Setting up shared-mime-info (1.10-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:armhf (0.8.2-1) ... Setting up libeigen3-dev (3.3.7-1) ... Setting up libgssapi-krb5-2:armhf (1.17-3) ... Setting up libcroco3:armhf (0.6.12-3) ... Setting up libodbc1:armhf (2.3.6-0.1) ... Setting up ucf (3.0038+nmu1) ... Setting up libspatialite-dev:armhf (4.3.0a-5+b2) ... Setting up libqt5core5a:armhf (5.11.3+dfsg1-1+deb10u3) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up libqhull-dev:armhf (2015.2-4) ... Setting up ocl-icd-opencl-dev:armhf (2.2.12-2) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:armhf (1.13.1-2) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:armhf (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up libnl-3-dev:armhf (3.4.0-1) ... Setting up libva-drm2:armhf (2.4.0-1) ... Setting up groff-base (1.22.4-3) ... Setting up libqt5dbus5:armhf (5.11.3+dfsg1-1+deb10u3) ... Setting up libxcb-randr0:armhf (1.13.1-2) ... Setting up tcl (8.6.9+1) ... Setting up libxslt1.1:armhf (1.1.32-2.2~deb10u1) ... Setting up libcurl4:armhf (7.64.0-4+deb10u1) ... Setting up libllvm7:armhf (1:7.0.1-8) ... Setting up libx11-6:armhf (2:1.6.7-1) ... Setting up libogdi3.2-dev (3.2.1+ds-4) ... Setting up libharfbuzz0b:armhf (2.3.1-1) ... Setting up libdrm-omap1:armhf (2.4.97-1) ... Setting up libqt5sensors5:armhf (5.11.3-2) ... Setting up libepsilon-dev:armhf (0.9.2+dfsg-4) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up x11proto-scrnsaver-dev (2018.4-4) ... Setting up libwacom2:armhf (0.32-1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libfftw3-dev:armhf (3.3.8-2) ... Setting up libopenmpt0:armhf (0.4.3-1) ... Setting up libavahi-client3:armhf (0.7-4+b1) ... Setting up libdrm-exynos1:armhf (2.4.97-1) ... Setting up libblas-dev:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libdrm-amdgpu1:armhf (2.4.97-1) ... Setting up libssh-gcrypt-4:armhf (0.8.7-1+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libkml-dev:armhf (1.3.0-7) ... Setting up libxcb-dri3-0:armhf (1.13.1-2) ... Setting up libpaper1:armhf (1.1.28) ... Creating config file /etc/papersize with new version Setting up libibverbs1:armhf (22.1-1) ... Setting up libgnutls-dane0:armhf (3.6.7-4+deb10u3) ... Setting up libpython2.7:armhf (2.7.16-2+deb10u1) ... Setting up liblapack3:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libpython2.7-dev:armhf (2.7.16-2+deb10u1) ... Setting up libdrm-nouveau2:armhf (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libharfbuzz-icu0:armhf (2.3.1-1) ... Setting up libdrm-etnaviv1:armhf (2.4.97-1) ... Setting up libxcb1-dev:armhf (1.13.1-2) ... Setting up libxpm4:armhf (1:3.5.12-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libpmix2:armhf (3.1.2-3) ... Setting up libgbm1:armhf (18.3.6-2+deb10u1) ... Setting up ibverbs-providers:armhf (22.1-1) ... Setting up libpython2-stdlib:armhf (2.7.16-1) ... Setting up libgeotiff-dev:armhf (1.4.3-1) ... Setting up libsm-dev:armhf (2:1.2.3-1) ... Setting up libdrm-radeon1:armhf (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libopenmpi3:armhf (3.1.3-11) ... Setting up libqt5positioning5:armhf (5.11.3+dfsg-2) ... Setting up libgl1-mesa-dri:armhf (18.3.6-2+deb10u1) ... Setting up libhdf5-cpp-103:armhf (1.10.4+repack-10) ... Setting up libarpack2:armhf (3.7.0-2) ... Setting up libpq5:armhf (11.7-0+deb10u1) ... Setting up libx11-dev:armhf (2:1.6.7-1) ... Setting up libsuperlu5:armhf (5.2.1+dfsg1-4) ... Setting up libxext6:armhf (2:1.3.3-1+b2) ... Setting up libxcb-dri3-dev:armhf (1.13.1-2) ... Setting up libpq-dev (11.7-0+deb10u1) ... Setting up libcurl3-gnutls:armhf (7.64.0-4+deb10u1) ... Setting up libnetcdf13:armhf (1:4.6.2-1) ... Setting up libpaper-utils (1.1.28) ... Setting up libcurl4-gnutls-dev:armhf (7.64.0-4+deb10u1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up libnetcdf-c++4 (4.2-11) ... Setting up libqt5network5:armhf (5.11.3+dfsg1-1+deb10u3) ... Setting up libfreetype6-dev:armhf (2.9.1-3+deb10u1) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up libinput-bin (1.12.6-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libnl-route-3-dev:armhf (3.4.0-1) ... Setting up libltdl-dev:armhf (2.4.6-9) ... Setting up libpython-stdlib:armhf (2.7.16-1) ... Setting up libegl-mesa0:armhf (18.3.6-2+deb10u1) ... Setting up libxcb-dri2-0-dev:armhf (1.13.1-2) ... Setting up libhdf5-openmpi-103:armhf (1.10.4+repack-10) ... Setting up libxfixes3:armhf (1:5.0.3-1) ... Setting up libqt5qml5:armhf (5.11.3-4) ... Setting up libgdk-pixbuf2.0-0:armhf (2.38.1+dfsg-1) ... Setting up libxinerama1:armhf (2:1.1.4-2) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up liblapack-dev:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdrm-freedreno1:armhf (2.4.97-1) ... Setting up libnetcdf-dev (1:4.6.2-1) ... Setting up libqt5webchannel5:armhf (5.11.3-2) ... Setting up libxcb-render0-dev:armhf (1.13.1-2) ... Setting up libxcb-glx0-dev:armhf (1.13.1-2) ... Setting up libxt6:armhf (1:1.1.5-1+b3) ... Setting up libdrm-tegra0:armhf (2.4.97-1) ... Setting up tcl-dev:armhf (8.6.9+1) ... Setting up libxcb-shape0-dev:armhf (1.13.1-2) ... Setting up libxext-dev:armhf (2:1.3.3-1+b2) ... Setting up libcups2:armhf (2.2.10-6+deb10u3) ... Setting up libvdpau1:armhf (1.1.1-10) ... Setting up libdapclient6v5:armhf (3.20.3-1) ... Setting up libegl1:armhf (1.1.0-1) ... Setting up cmake (3.13.4-1) ... Setting up libxcb-sync-dev:armhf (1.13.1-2) ... Setting up libpython2-dev:armhf (2.7.16-1) ... Setting up libhwloc-dev:armhf (1.11.12-3) ... Setting up libxcb-xfixes0-dev:armhf (1.13.1-2) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libfontconfig1:armhf (2.13.1-2) ... Setting up libarmadillo9 (1:9.200.7+dfsg-1) ... Setting up libbluray2:armhf (1:1.1.0-1) ... Setting up libsuperlu-dev:armhf (5.2.1+dfsg1-4) ... Setting up libva-x11-2:armhf (2.4.0-1) ... Setting up python (2.7.16-1) ... Setting up libxrender-dev:armhf (1:0.9.10-1) ... Setting up python-trie (0.2+ds-1) ... Setting up python-incremental (16.10.1-3) ... Setting up python-constantly (15.1.0-1) ... Setting up libdap-dev:armhf (3.20.3-1) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up python-hyperlink (17.3.1-2) ... Setting up python-ipaddress (1.0.17-1) ... Setting up python-cffi-backend (1.12.2-1) ... Setting up libgnutls28-dev:armhf (3.6.7-4+deb10u3) ... Setting up libinput10:armhf (1.12.6-2) ... Setting up python-enum34 (1.1.6-2) ... Setting up libx11-xcb-dev:armhf (2:1.6.7-1) ... Setting up cython (0.29.2-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libdrm-dev:armhf (2.4.97-1) ... Setting up libxft2:armhf (2.3.2-2) ... Setting up libxmu6:armhf (2:1.1.2-2+b3) ... Setting up libarpack2-dev:armhf (3.7.0-2) ... Setting up libfontconfig1-dev:armhf (2.13.1-2) ... Setting up libxdamage1:armhf (1:1.1.4-3+b3) ... Setting up libxerces-c3.2:armhf (3.2.2+debian-1+b1) ... Setting up libxi6:armhf (2:1.7.9-1) ... Setting up python-cbor (1.0.0-1+b1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up libxxf86vm-dev:armhf (1:1.1.4-1+b2) ... Setting up libtk8.6:armhf (8.6.9-2) ... Setting up libpango-1.0-0:armhf (1.42.4-8~deb10u1) ... Setting up libqt5gui5:armhf (5.11.3+dfsg1-1+deb10u3) ... Setting up python-pyqrcode (1.2.1-2) ... Setting up mpi-default-bin (1.13) ... Setting up libpoppler82:armhf (0.71.0-5) ... Setting up libqt5widgets5:armhf (5.11.3+dfsg1-1+deb10u3) ... Setting up python-asn1crypto (0.24.0-1) ... Setting up libnetcdf-cxx-legacy-dev (4.2-11) ... Setting up libxaw7:armhf (2:1.0.13-1+b2) ... Setting up libibverbs-dev:armhf (22.1-1) ... Setting up libxss-dev:armhf (1:1.2.3-1) ... Setting up python-attr (18.2.0-1) ... Setting up libcairo2:armhf (1.16.0-4) ... Setting up libavutil56:armhf (7:4.1.4-1~deb10u1) ... Setting up libcupsimage2:armhf (2.2.10-6+deb10u3) ... Setting up libpython-dev:armhf (2.7.16-1) ... Setting up python-six (1.12.0-1) ... Setting up libarmadillo-dev (1:9.200.7+dfsg-1) ... Setting up libxfixes-dev:armhf (1:5.0.3-1) ... Setting up libqt5printsupport5:armhf (5.11.3+dfsg1-1+deb10u3) ... Setting up python-zope.interface (4.3.2-1+b2) ... Setting up python-configparser (3.5.0b2-1) ... Setting up python-wsaccel (0.6.2-1+b1) ... Setting up python-pyasn1 (0.4.2-3) ... Setting up libxcb-randr0-dev:armhf (1.13.1-2) ... Setting up libxt-dev:armhf (1:1.1.5-1+b3) ... Setting up python-nacl (1.3.0-2) ... Setting up libxerces-c-dev (3.2.2+debian-1+b1) ... Setting up libxcb-present-dev:armhf (1.13.1-2) ... Setting up python-pyasn1-modules (0.2.1-0.2) ... Setting up python-concurrent.futures (3.2.0-2) ... Setting up libhdf4-alt-dev (4.2.13-4) ... Setting up python-mpi4py (2.0.0-3+b3) ... Setting up libmariadb-dev (1:10.3.22-0+deb10u1) ... Setting up libqt5opengl5:armhf (5.11.3+dfsg1-1+deb10u3) ... Setting up libtheora0:armhf (1.1.1+dfsg.1-15) ... Setting up python-twisted-bin:armhf (18.9.0-3) ... Setting up mesa-common-dev:armhf (18.3.6-2+deb10u1) ... Setting up libswscale5:armhf (7:4.1.4-1~deb10u1) ... Setting up libopenmpi-dev:armhf (3.1.3-11) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up python-u-msgpack (2.1-1) ... Setting up libpangoft2-1.0-0:armhf (1.42.4-8~deb10u1) ... Setting up python-snappy (0.5.3-1) ... Setting up python-future (0.16.0-1) ... update-alternatives: using /usr/bin/python2-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python2-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python-ubjson (0.12.0-1) ... Setting up libhdf5-openmpi-dev (1.10.4+repack-10) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode Setting up libqt5quick5:armhf (5.11.3-4) ... Setting up libpangocairo-1.0-0:armhf (1.42.4-8~deb10u1) ... Setting up libxft-dev:armhf (2.3.2-2) ... Setting up libxdamage-dev:armhf (1:1.1.4-3+b3) ... Setting up libpoppler-dev:armhf (0.71.0-5) ... Setting up libavutil-dev:armhf (7:4.1.4-1~deb10u1) ... Setting up tk8.6 (8.6.9-2) ... Setting up libmariadb-dev-compat:armhf (1:10.3.22-0+deb10u1) ... Setting up python-trollius (2.1~b1-5) ... Setting up libglx-mesa0:armhf (18.3.6-2+deb10u1) ... Setting up libgs9:armhf (9.27~dfsg-2+deb10u3) ... Setting up libglx0:armhf (1.1.0-1) ... Setting up python-automat (0.6.0-1) ... Setting up libpoppler-private-dev:armhf (0.71.0-5) ... Setting up python-cryptography (2.6.1-3+deb10u2) ... Setting up libqt5webkit5:armhf (5.212.0~alpha2-21) ... Setting up libswresample3:armhf (7:4.1.4-1~deb10u1) ... Setting up librsvg2-2:armhf (2.44.10-2.1) ... Setting up libgl1:armhf (1.1.0-1) ... Setting up libtheora-dev:armhf (1.1.1+dfsg.1-15) ... Setting up libswscale-dev:armhf (7:4.1.4-1~deb10u1) ... Setting up python-lz4 (1.1.0+dfsg-1) ... Setting up tk8.6-dev:armhf (8.6.9-2) ... Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up mpi-default-dev (1.13) ... Setting up libavcodec58:armhf (7:4.1.4-1~deb10u1) ... Setting up libglu1-mesa:armhf (9.0.0-2.1+b3) ... Setting up tk (8.6.9+1) ... Setting up texlive-base (2018.20190227-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up python-openssl (19.0.0-1) ... Setting up python-service-identity (16.0.0-2) ... Setting up libchromaprint1:armhf (1.4.3-3) ... Setting up default-libmysqlclient-dev:armhf (1.0.5) ... Setting up libfltk1.1:armhf (1.1.10-26) ... Setting up libswresample-dev:armhf (7:4.1.4-1~deb10u1) ... Setting up libavformat58:armhf (7:4.1.4-1~deb10u1) ... Setting up libavcodec-dev:armhf (7:4.1.4-1~deb10u1) ... Setting up libglvnd-dev:armhf (1.1.0-1) ... Setting up libavformat-dev:armhf (7:4.1.4-1~deb10u1) ... Setting up libgl2ps1.4 (1.4.0+dfsg1-2) ... Setting up tk-dev:armhf (8.6.9+1) ... Setting up texlive-latex-base (2018.20190227-2) ... Setting up texlive-latex-recommended (2018.20190227-2) ... Setting up libhdf5-mpi-dev (1.10.4+repack-10) ... Setting up python-twisted-core (18.9.0-3) ... Setting up libgl1-mesa-dev:armhf (18.3.6-2+deb10u1) ... Setting up htmldoc (1.9.3-1) ... Setting up python-twisted (18.9.0-3) ... Setting up python-txaio (2.10.0-1) ... Setting up libgl2ps-dev (1.4.0+dfsg1-2) ... Setting up python-autobahn (17.10.1+dfsg1-3+deb10u1) ... Setting up libglu1-mesa-dev:armhf (9.0.0-2.1+b3) ... Setting up odbcinst (2.3.6-0.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up odbcinst1debian2:armhf (2.3.6-0.1) ... Setting up libgdal20 (2.4.0+dfsg-1+b1) ... Setting up unixodbc-dev:armhf (2.3.6-0.1) ... Setting up libvtk6.3 (6.3.0+dfsg2-2+b5) ... Setting up debhelper (12.1.1) ... Setting up libvtk6.3-qt (6.3.0+dfsg2-2+b5) ... Setting up tcl-vtk6 (6.3.0+dfsg2-2+b5) ... Setting up libgdal-dev (2.4.0+dfsg-1+b1) ... Setting up python-vtk6 (6.3.0+dfsg2-2+b5) ... Setting up vtk6 (6.3.0+dfsg2-2+b5) ... Setting up libvtk6-jni (6.3.0+dfsg2-2+b5) ... Setting up libvtk6-java (6.3.0+dfsg2-2+b5) ... Setting up libvtk6-dev (6.3.0+dfsg2-2+b5) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for tex-common (6.11) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/lammps-0~20181211.gitad1b1897d+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 0~20181211.gitad1b1897d+dfsg1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --sourcedirectory=cmake --builddirectory=/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' dh_auto_clean rm -rf /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build make[1]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' dh_autoreconf_clean -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_clean -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build debian/rules build dh build --sourcedirectory=cmake --builddirectory=/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build dh_update_autotools_config -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_autoreconf -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' dh_auto_configure -- \ -DPKG_ASPHERE=ON \ -DPKG_BODY=ON \ -DPKG_CLASS2=ON \ -DPKG_COLLOID=ON \ -DPKG_COMPRESS=ON \ -DPKG_CORESHELL=ON \ -DPKG_DIPOLE=ON \ -DPKG_GPU=ON \ -DPKG_GRANULAR=ON \ -DPKG_KIM=OFF \ -DPKG_KSPACE=ON \ -DPKG_MANYBODY=ON \ -DPKG_MC=ON \ -DPKG_MEAM=ON \ -DPKG_MISC=ON \ -DPKG_MOLECULE=ON \ -DPKG_MPIIO=ON \ -DPKG_OPT=ON \ -DPKG_PERI=ON \ -DPKG_POEMS=ON \ -DPKG_PYTHON=ON \ -DPKG_QEQ=ON \ -DPKG_REAX=OFF \ -DPKG_REPLICA=ON \ -DPKG_RIGID=ON \ -DPKG_SHOCK=ON \ -DPKG_SNAP=ON \ -DPKG_SRD=ON \ -DPKG_USER-ATC=ON \ -DPKG_USER-AWPMD=ON \ -DPKG_USER-BOCS=ON \ -DPKG_USER-CGDNA=ON \ -DPKG_USER-CGSDK=ON \ -DPKG_USER-DIFFRACTION=ON \ -DPKG_USER-DPD=ON \ -DPKG_USER-DRUDE=ON \ -DPKG_USER-EFF=ON \ -DPKG_USER-FEP=ON \ -DPKG_USER-H5MD=ON \ -DPKG_USER-LB=ON \ -DPKG_USER-MANIFOLD=ON \ -DPKG_USER-MEAMC=ON \ -DPKG_USER-MESO=ON \ -DPKG_USER-MGPT=ON \ -DPKG_USER-MISC=ON \ -DPKG_USER-MOFFF=ON \ -DPKG_USER-MOLFILE=ON \ -DPKG_USER-NETCDF=ON \ -DPKG_USER-OMP=ON \ -DPKG_USER-PHONON=ON \ -DPKG_USER-QTB=ON \ -DPKG_USER-REAXC=OFF \ -DPKG_USER-SMD=ON \ -DPKG_USER-SMTBQ=ON \ -DPKG_USER-SPH=ON \ -DPKG_USER-TALLY=ON \ -DPKG_USER-UEF=ON \ -DPKG_USER-VTK=ON \ -DPKG_VORONOI=ON cd debian/build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DPKG_ASPHERE=ON -DPKG_BODY=ON -DPKG_CLASS2=ON -DPKG_COLLOID=ON -DPKG_COMPRESS=ON -DPKG_CORESHELL=ON -DPKG_DIPOLE=ON -DPKG_GPU=ON -DPKG_GRANULAR=ON -DPKG_KIM=OFF -DPKG_KSPACE=ON -DPKG_MANYBODY=ON -DPKG_MC=ON -DPKG_MEAM=ON -DPKG_MISC=ON -DPKG_MOLECULE=ON -DPKG_MPIIO=ON -DPKG_OPT=ON -DPKG_PERI=ON -DPKG_POEMS=ON -DPKG_PYTHON=ON -DPKG_QEQ=ON -DPKG_REAX=OFF -DPKG_REPLICA=ON -DPKG_RIGID=ON -DPKG_SHOCK=ON -DPKG_SNAP=ON -DPKG_SRD=ON -DPKG_USER-ATC=ON -DPKG_USER-AWPMD=ON -DPKG_USER-BOCS=ON -DPKG_USER-CGDNA=ON -DPKG_USER-CGSDK=ON -DPKG_USER-DIFFRACTION=ON -DPKG_USER-DPD=ON -DPKG_USER-DRUDE=ON -DPKG_USER-EFF=ON -DPKG_USER-FEP=ON -DPKG_USER-H5MD=ON -DPKG_USER-LB=ON -DPKG_USER-MANIFOLD=ON -DPKG_USER-MEAMC=ON -DPKG_USER-MESO=ON -DPKG_USER-MGPT=ON -DPKG_USER-MISC=ON -DPKG_USER-MOFFF=ON -DPKG_USER-MOLFILE=ON -DPKG_USER-NETCDF=ON -DPKG_USER-OMP=ON -DPKG_USER-PHONON=ON -DPKG_USER-QTB=ON -DPKG_USER-REAXC=OFF -DPKG_USER-SMD=ON -DPKG_USER-SMTBQ=ON -DPKG_USER-SPH=ON -DPKG_USER-TALLY=ON -DPKG_USER-UEF=ON -DPKG_USER-VTK=ON -DPKG_VORONOI=ON ../../cmake -- The CXX compiler identification is GNU 8.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Running check for auto-generated files from make-based build system -- The Fortran compiler identification is GNU 8.3.0 -- Check for working Fortran compiler: /usr/bin/gfortran -- Check for working Fortran compiler: /usr/bin/gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/gfortran supports Fortran 90 -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes -- The C compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Found MPI_C: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI_Fortran: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_usempif08.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP_Fortran: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Found FFTW3: /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Looking for Fortran sgemm -- Looking for Fortran sgemm - not found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Found PythonInterp: /usr/bin/python (found version "2.7.16") -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython2.7.so (found version "2.7.16") -- Found JPEG: /usr/lib/arm-linux-gnueabihf/libjpeg.so (found version "62") -- Found PNG: /usr/lib/arm-linux-gnueabihf/libpng.so (found version "1.6.36") -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Found GZIP: /bin/gzip -- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE) -- Found VORO: /usr/lib/arm-linux-gnueabihf/libvoro++.so -- Found NetCDF: /usr/lib/arm-linux-gnueabihf/libnetcdf.so -- The imported target "vtkRenderingPythonTkWidgets" references the file "/usr/lib/arm-linux-gnueabihf/libvtkRenderingPythonTkWidgets.so" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- The imported target "vtk" references the file "/usr/bin/vtk" but this file does not exist. Possible reasons include: * The file was deleted, renamed, or moved to another location. * An install or uninstall procedure did not complete successfully. * The installation package was faulty and contained "/usr/lib/cmake/vtk-6.3/VTKTargets.cmake" but not all the files it references. -- Looking for C++ include math.h -- Looking for C++ include math.h - found -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libpthread.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.4") -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - found -- Found OpenCL: /usr/lib/arm-linux-gnueabihf/libOpenCL.so (found version "2.2") Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/atom_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/beck_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/born_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/born_coul_long_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/born_coul_long_cs_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/born_coul_wolf_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/born_coul_wolf_cs_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/buck_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/buck_coul_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/buck_coul_long_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/charmm_long_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/colloid_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/coul_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/coul_debye_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/coul_dsf_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/coul_long_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/coul_long_cs_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/device_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/dipole_lj_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/dipole_lj_sf_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/dipole_long_lj_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/dpd_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/eam_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/ellipsoid_nbor_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/gauss_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj96_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_class2_long_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_coul_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_coul_debye_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_coul_long_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_coul_msm_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_cubic_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_dsf_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_expand_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_expand_coul_long_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_gromacs_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_sdk_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/lj_sdk_long_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/mie_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/morse_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/neighbor_cpu_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/neighbor_gpu_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/pppm_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/re_squared_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/re_squared_lj_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/soft_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/sw_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/table_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/tersoff_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/tersoff_mod_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/tersoff_zbl_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/ufm_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/vashishta_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/yukawa_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/yukawa_colloid_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/zbl_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/gayberne_cl.h... Creating /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu/gayberne_lj_cl.h... -- Generating style_angle.h... -- Generating style_atom.h... -- Generating style_body.h... -- Generating style_bond.h... -- Generating style_command.h... -- Generating style_compute.h... -- Generating style_dihedral.h... -- Generating style_dump.h... -- Generating style_fix.h... -- Generating style_improper.h... -- Generating style_integrate.h... -- Generating style_kspace.h... -- Generating style_minimize.h... -- Generating style_nbin.h... -- Generating style_npair.h... -- Generating style_nstencil.h... -- Generating style_ntopo.h... -- Generating style_pair.h... -- Generating style_reader.h... -- Generating style_region.h... -- Generating lmpinstalledpkgs.h... -- Building package: ASPHERE -- Building package: BODY -- Building package: CLASS2 -- Building package: COLLOID -- Building package: COMPRESS -- Building package: DIPOLE -- Building package: GRANULAR -- Building package: KSPACE -- Building package: MANYBODY -- Building package: MC -- Building package: MEAM -- Building package: MISC -- Building package: MOLECULE -- Building package: PERI -- Building package: REPLICA -- Building package: RIGID -- Building package: SHOCK -- Building package: SNAP -- Building package: SRD -- Building package: PYTHON -- Building package: MPIIO -- Building package: VORONOI -- Building package: POEMS -- Building package: USER-ATC -- Building package: USER-AWPMD -- Building package: USER-BOCS -- Building package: USER-CGDNA -- Building package: USER-MESO -- Building package: USER-CGSDK -- Building package: USER-DIFFRACTION -- Building package: USER-DPD -- Building package: USER-DRUDE -- Building package: USER-EFF -- Building package: USER-FEP -- Building package: USER-H5MD -- Building package: USER-LB -- Building package: USER-MANIFOLD -- Building package: USER-MEAMC -- Building package: USER-MGPT -- Building package: USER-MISC -- Building package: USER-MOFFF -- Building package: USER-MOLFILE -- Building package: USER-NETCDF -- Building package: USER-PHONON -- Building package: USER-QTB -- Building package: USER-SMD -- Building package: USER-SMTBQ -- Building package: USER-SPH -- Building package: USER-TALLY -- Building package: USER-UEF -- Building package: USER-VTK -- Building package: USER-OMP -- Building package: OPT -- Building package: GPU -- Building package: CORESHELL -- Building package: QEQ -- The following packages have been found: * MPI * OpenMP * PkgConfig * FFTW3 * LAPACK * Threads * BLAS * PythonInterp * PythonLibs * JPEG * PNG * VORO * NetCDF * Eigen3 * VTK * ZLIB * HDF5 * OpenCL -- <<< Build configuration >>> Build type None Install path /usr Compilers and Flags: C++ Compiler /usr/bin/c++ Type GNU Version 8.3.0 C++ Flags -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp Defines LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;FFT_FFTW;LMP_PYTHON;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;LMP_HAS_NETCDF;NC_64BIT_DATA=0x0020;vtkFiltersFlowPaths_AUTOINIT=1(vtkFiltersParallelFlowPaths);vtkIOExodus_AUTOINIT=1(vtkIOParallelExodus);vtkIOGeometry_AUTOINIT=1(vtkIOMPIParallel);vtkIOImage_AUTOINIT=1(vtkIOMPIImage);vtkIOParallel_AUTOINIT=1(vtkIOMPIParallel);vtkIOSQL_AUTOINIT=2(vtkIOMySQL,vtkIOPostgreSQL);vtkRenderingContext2D_AUTOINIT=1(vtkRenderingContextOpenGL);vtkRenderingCore_AUTOINIT=3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL);vtkRenderingFreeType_AUTOINIT=2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib);vtkRenderingLIC_AUTOINIT=1(vtkRenderingParallelLIC);vtkRenderingVolume_AUTOINIT=1(vtkRenderingVolumeOpenGL);LAMMPS_VTK;LMP_MPIIO;LMP_USER_OMP -- Fortran Compiler /usr/bin/gfortran Type GNU Version 8.3.0 Fortran Flags -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -- C Compiler /usr/bin/cc Type GNU Version 8.3.0 C Flags -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -- Linker flags: Executable -Wl,-z,relro -- Static libraries -- Link libraries: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so;/usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so;/usr/lib/arm-linux-gnueabihf/libfftw3.so;/usr/lib/arm-linux-gnueabihf/libpython2.7.so;/usr/lib/arm-linux-gnueabihf/libjpeg.so;/usr/lib/arm-linux-gnueabihf/libpng.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libvoro++.so;molfile;/usr/lib/arm-linux-gnueabihf/libnetcdf.so;vtkChartsCore;vtkCommonColor;vtkCommonDataModel;vtkCommonMath;vtkCommonCore;vtksys;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkInfovisCore;vtkFiltersExtraction;vtkCommonExecutionModel;vtkFiltersCore;vtkFiltersGeneral;vtkCommonComputationalGeometry;vtkFiltersStatistics;vtkImagingFourier;vtkImagingCore;vtkalglib;vtkRenderingContext2D;vtkRenderingCore;vtkFiltersGeometry;vtkFiltersSources;vtkRenderingFreeType;/usr/lib/arm-linux-gnueabihf/libfreetype.so;vtkftgl;vtkDICOMParser;vtkDomainsChemistry;vtkIOXML;vtkIOGeometry;vtkIOCore;vtkIOXMLParser;/usr/lib/arm-linux-gnueabihf/libexpat.so;vtkFiltersAMR;vtkParallelCore;vtkIOLegacy;vtkFiltersFlowPaths;vtkFiltersGeneric;vtkFiltersHybrid;vtkImagingSources;vtkFiltersHyperTree;vtkFiltersImaging;vtkImagingGeneral;vtkFiltersModeling;vtkFiltersParallel;vtkFiltersParallelFlowPaths;vtkParallelMPI;vtkFiltersParallelGeometry;vtkFiltersParallelImaging;vtkFiltersParallelMPI;vtkFiltersParallelStatistics;vtkFiltersProgrammable;vtkFiltersPython;vtkWrappingPythonCore;vtkWrappingTools;vtkFiltersReebGraph;vtkFiltersSMP;vtkFiltersSelection;vtkFiltersTexture;vtkFiltersVerdict;verdict;vtkGeovisCore;vtkInfovisLayout;vtkImagingHybrid;vtkIOImage;vtkmetaio;/usr/lib/arm-linux-gnueabihf/libtiff.so;vtkInfovisBoostGraphAlgorithms;vtkInteractionStyle;vtkInteractionWidgets;vtkRenderingAnnotation;vtkImagingColor;vtkRenderingVolume;vtkViewsCore;/usr/lib/arm-linux-gnueabihf/libproj.so;vtkIOAMR;/usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libdl.so;/usr/lib/arm-linux-gnueabihf/libm.so;vtkIOEnSight;vtkIOExodus;vtkexoIIc;/usr/lib/arm-linux-gnueabihf/libnetcdf_c++.so;vtkIOExport;vtkRenderingGL2PS;vtkRenderingContextOpenGL;vtkRenderingOpenGL;/usr/lib/arm-linux-gnueabihf/libgl2ps.so;vtkRenderingLabel;vtkIOFFMPEG;vtkIOMovie;/usr/lib/arm-linux-gnueabihf/libtheoraenc.so;/usr/lib/arm-linux-gnueabihf/libtheoradec.so;/usr/lib/arm-linux-gnueabihf/libogg.so;vtkIOGDAL;vtkIOGeoJSON;vtkIOImport;vtkIOInfovis;/usr/lib/arm-linux-gnueabihf/libxml2.so;vtkIOLSDyna;vtkIOMINC;vtkIOMPIImage;vtkIOMPIParallel;vtkIOParallel;vtkIONetCDF;/usr/lib/arm-linux-gnueabihf/libjsoncpp.so;vtkIOMySQL;vtkIOSQL;sqlite3;vtkIOODBC;vtkIOPLY;vtkIOParallelExodus;vtkIOParallelLSDyna;vtkIOParallelNetCDF;vtkIOParallelXML;vtkIOPostgreSQL;vtkIOVPIC;VPIC;vtkIOVideo;vtkIOXdmf2;vtkxdmf2;vtkImagingMath;vtkImagingMorphological;vtkImagingStatistics;vtkImagingStencil;vtkInteractionImage;vtkLocalExample;vtkParallelMPI4Py;vtkPythonInterpreter;vtkRenderingExternal;vtkRenderingFreeTypeFontConfig;vtkRenderingImage;vtkRenderingLIC;vtkRenderingLOD;vtkRenderingMatplotlib;vtkRenderingParallel;vtkRenderingParallelLIC;vtkRenderingVolumeAMR;vtkRenderingVolumeOpenGL;vtkTestingGenericBridge;vtkTestingIOSQL;vtkTestingRendering;vtkViewsContext2D;vtkViewsGeovis;vtkViewsInfovis;vtkWrappingJava;m;meam;poems;atc;awpmd;h5md;gpu;gfortran;gcc_s;gcc;c -- Using mpi with headers in /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi;/usr/lib/arm-linux-gnueabihf/openmpi/include and /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so;/usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so -- GPU Api: OPENCL -- OCL Tune: GENERIC -- GPU Precision: MIXED -- Using FFTW3 as FFT -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build make[1]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' cd doc; /usr/bin/make old; /usr/bin/make pdf make[2]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/doc' g++ -O -Wall -o utils/txt2html/txt2html.exe utils/txt2html/txt2html.cpp Converting Build.txt ... Converting Build_basics.txt ... Converting Build_cmake.txt ... Converting Build_extras.txt ... Converting Build_link.txt ... Converting Build_make.txt ... Converting Build_package.txt ... Converting Build_settings.txt ... Converting Build_windows.txt ... Converting Commands.txt ... Converting Commands_all.txt ... Converting Commands_bond.txt ... Converting Commands_category.txt ... Converting Commands_compute.txt ... Converting Commands_fix.txt ... Converting Commands_input.txt ... Converting Commands_kspace.txt ... Converting Commands_pair.txt ... Converting Commands_parse.txt ... Converting Commands_structure.txt ... Converting Errors.txt ... Converting Errors_bugs.txt ... Converting Errors_common.txt ... Converting Errors_messages.txt ... Converting Errors_warnings.txt ... Converting Examples.txt ... Converting Howto.txt ... Converting Howto_2d.txt ... Converting Howto_barostat.txt ... Converting Howto_bash.txt ... Converting Howto_bioFF.txt ... Converting Howto_body.txt ... Converting Howto_chunk.txt ... Converting Howto_client_server.txt ... Converting Howto_coreshell.txt ... Converting Howto_couple.txt ... Converting Howto_diffusion.txt ... Converting Howto_dispersion.txt ... Converting Howto_drude.txt ... Converting Howto_drude2.txt ... Converting Howto_elastic.txt ... Converting Howto_github.txt ... Converting Howto_granular.txt ... Converting Howto_kappa.txt ... Converting Howto_library.txt ... Converting Howto_manifold.txt ... Converting Howto_multiple.txt ... Converting Howto_nemd.txt ... Converting Howto_output.txt ... Converting Howto_polarizable.txt ... Converting Howto_pylammps.txt ... Converting Howto_replica.txt ... Converting Howto_restart.txt ... Converting Howto_spc.txt ... Converting Howto_spherical.txt ... Converting Howto_spins.txt ... Converting Howto_temperature.txt ... Converting Howto_thermostat.txt ... Converting Howto_tip3p.txt ... Converting Howto_tip4p.txt ... Converting Howto_triclinic.txt ... Converting Howto_viscosity.txt ... Converting Howto_viz.txt ... Converting Howto_walls.txt ... Converting Install.txt ... Converting Install_git.txt ... Converting Install_linux.txt ... Converting Install_mac.txt ... Converting Install_patch.txt ... Converting Install_svn.txt ... Converting Install_tarball.txt ... Converting Install_windows.txt ... Converting Intro.txt ... Converting Intro_authors.txt ... Converting Intro_features.txt ... Converting Intro_nonfeatures.txt ... Converting Intro_opensource.txt ... Converting Intro_overview.txt ... Converting Intro_website.txt ... Converting Manual.txt ... Converting Manual_build.txt ... Converting Manual_version.txt ... Converting Modify.txt ... Converting Modify_atom.txt ... Converting Modify_body.txt ... Converting Modify_bond.txt ... Converting Modify_command.txt ... Converting Modify_compute.txt ... Converting Modify_contribute.txt ... Converting Modify_dump.txt ... Converting Modify_fix.txt ... Converting Modify_kspace.txt ... Converting Modify_min.txt ... Converting Modify_overview.txt ... Converting Modify_pair.txt ... Converting Modify_region.txt ... Converting Modify_thermo.txt ... Converting Modify_variable.txt ... Converting Packages.txt ... Converting Packages_details.txt ... Converting Packages_standard.txt ... Converting Packages_user.txt ... Converting Python_call.txt ... Converting Python_examples.txt ... Converting Python_head.txt ... Converting Python_install.txt ... Converting Python_library.txt ... Converting Python_mpi.txt ... Converting Python_overview.txt ... Converting Python_pylammps.txt ... Converting Python_run.txt ... Converting Python_shlib.txt ... Converting Python_test.txt ... Converting Run_basics.txt ... Converting Run_head.txt ... Converting Run_options.txt ... Converting Run_output.txt ... Converting Run_windows.txt ... Converting Speed.txt ... Converting Speed_bench.txt ... Converting Speed_compare.txt ... Converting Speed_gpu.txt ... Converting Speed_intel.txt ... Converting Speed_kokkos.txt ... Converting Speed_measure.txt ... Converting Speed_omp.txt ... Converting Speed_opt.txt ... Converting Speed_packages.txt ... Converting Speed_tips.txt ... Converting Tools.txt ... Converting angle_charmm.txt ... Converting angle_class2.txt ... Converting angle_coeff.txt ... Converting angle_cosine.txt ... Converting angle_cosine_buck6d.txt ... Converting angle_cosine_delta.txt ... Converting angle_cosine_periodic.txt ... Converting angle_cosine_shift.txt ... Converting angle_cosine_shift_exp.txt ... Converting angle_cosine_squared.txt ... Converting angle_dipole.txt ... Converting angle_fourier.txt ... Converting angle_fourier_simple.txt ... Converting angle_harmonic.txt ... Converting angle_hybrid.txt ... Converting angle_none.txt ... Converting angle_quartic.txt ... Converting angle_sdk.txt ... Converting angle_style.txt ... Converting angle_table.txt ... Converting angle_zero.txt ... Converting angles.txt ... Converting atom_modify.txt ... Converting atom_style.txt ... Converting balance.txt ... Converting bond_class2.txt ... Converting bond_coeff.txt ... Converting bond_fene.txt ... Converting bond_fene_expand.txt ... Converting bond_gromos.txt ... Converting bond_harmonic.txt ... Converting bond_harmonic_shift.txt ... Converting bond_harmonic_shift_cut.txt ... Converting bond_hybrid.txt ... Converting bond_morse.txt ... Converting bond_none.txt ... Converting bond_nonlinear.txt ... Converting bond_oxdna.txt ... Converting bond_quartic.txt ... Converting bond_style.txt ... Converting bond_table.txt ... Converting bond_write.txt ... Converting bond_zero.txt ... Converting bonds.txt ... Converting boundary.txt ... Converting box.txt ... Converting change_box.txt ... Converting clear.txt ... Converting comm_modify.txt ... Converting comm_style.txt ... Converting commands_list.txt ... Converting compute.txt ... Converting compute_ackland_atom.txt ... Converting compute_adf.txt ... Converting compute_angle.txt ... Converting compute_angle_local.txt ... Converting compute_angmom_chunk.txt ... Converting compute_basal_atom.txt ... Converting compute_body_local.txt ... Converting compute_bond.txt ... Converting compute_bond_local.txt ... Converting compute_centro_atom.txt ... Converting compute_chunk_atom.txt ... Converting compute_chunk_spread_atom.txt ... Converting compute_cluster_atom.txt ... Converting compute_cna_atom.txt ... Converting compute_cnp_atom.txt ... Converting compute_com.txt ... Converting compute_com_chunk.txt ... Converting compute_contact_atom.txt ... Converting compute_coord_atom.txt ... Converting compute_damage_atom.txt ... Converting compute_dihedral.txt ... Converting compute_dihedral_local.txt ... Converting compute_dilatation_atom.txt ... Converting compute_dipole_chunk.txt ... Converting compute_displace_atom.txt ... Converting compute_dpd.txt ... Converting compute_dpd_atom.txt ... Converting compute_edpd_temp_atom.txt ... Converting compute_entropy_atom.txt ... Converting compute_erotate_asphere.txt ... Converting compute_erotate_rigid.txt ... Converting compute_erotate_sphere.txt ... Converting compute_erotate_sphere_atom.txt ... Converting compute_event_displace.txt ... Converting compute_fep.txt ... Converting compute_global_atom.txt ... Converting compute_group_group.txt ... Converting compute_gyration.txt ... Converting compute_gyration_chunk.txt ... Converting compute_heat_flux.txt ... Converting compute_hexorder_atom.txt ... Converting compute_improper.txt ... Converting compute_improper_local.txt ... Converting compute_inertia_chunk.txt ... Converting compute_ke.txt ... Converting compute_ke_atom.txt ... Converting compute_ke_atom_eff.txt ... Converting compute_ke_eff.txt ... Converting compute_ke_rigid.txt ... Converting compute_meso_e_atom.txt ... Converting compute_meso_rho_atom.txt ... Converting compute_meso_t_atom.txt ... Converting compute_modify.txt ... Converting compute_msd.txt ... Converting compute_msd_chunk.txt ... Converting compute_msd_nongauss.txt ... Converting compute_omega_chunk.txt ... Converting compute_orientorder_atom.txt ... Converting compute_pair.txt ... Converting compute_pair_local.txt ... Converting compute_pe.txt ... Converting compute_pe_atom.txt ... Converting compute_plasticity_atom.txt ... Converting compute_pressure.txt ... Converting compute_pressure_cylinder.txt ... Converting compute_pressure_uef.txt ... Converting compute_property_atom.txt ... Converting compute_property_chunk.txt ... Converting compute_property_local.txt ... Converting compute_ptm_atom.txt ... Converting compute_rdf.txt ... Converting compute_reduce.txt ... Converting compute_reduce_chunk.txt ... Converting compute_rigid_local.txt ... Converting compute_saed.txt ... Converting compute_slice.txt ... Converting compute_smd_contact_radius.txt ... Converting compute_smd_damage.txt ... Converting compute_smd_hourglass_error.txt ... Converting compute_smd_internal_energy.txt ... Converting compute_smd_plastic_strain.txt ... Converting compute_smd_plastic_strain_rate.txt ... Converting compute_smd_rho.txt ... Converting compute_smd_tlsph_defgrad.txt ... Converting compute_smd_tlsph_dt.txt ... Converting compute_smd_tlsph_num_neighs.txt ... Converting compute_smd_tlsph_shape.txt ... Converting compute_smd_tlsph_strain.txt ... Converting compute_smd_tlsph_strain_rate.txt ... Converting compute_smd_tlsph_stress.txt ... Converting compute_smd_triangle_vertices.txt ... Converting compute_smd_ulsph_num_neighs.txt ... Converting compute_smd_ulsph_strain.txt ... Converting compute_smd_ulsph_strain_rate.txt ... Converting compute_smd_ulsph_stress.txt ... Converting compute_smd_vol.txt ... Converting compute_sna_atom.txt ... Converting compute_spin.txt ... Converting compute_stress_atom.txt ... Converting compute_stress_mop.txt ... Converting compute_tally.txt ... Converting compute_tdpd_cc_atom.txt ... Converting compute_temp.txt ... Converting compute_temp_asphere.txt ... Converting compute_temp_body.txt ... Converting compute_temp_chunk.txt ... Converting compute_temp_com.txt ... Converting compute_temp_cs.txt ... Converting compute_temp_deform.txt ... Converting compute_temp_deform_eff.txt ... Converting compute_temp_drude.txt ... Converting compute_temp_eff.txt ... Converting compute_temp_partial.txt ... Converting compute_temp_profile.txt ... Converting compute_temp_ramp.txt ... Converting compute_temp_region.txt ... Converting compute_temp_region_eff.txt ... Converting compute_temp_rotate.txt ... Converting compute_temp_sphere.txt ... Converting compute_temp_uef.txt ... Converting compute_ti.txt ... Converting compute_torque_chunk.txt ... Converting compute_vacf.txt ... Converting compute_vcm_chunk.txt ... Converting compute_voronoi_atom.txt ... Converting compute_xrd.txt ... Converting computes.txt ... Converting create_atoms.txt ... Converting create_bonds.txt ... Converting create_box.txt ... Converting delete_atoms.txt ... Converting delete_bonds.txt ... Converting dielectric.txt ... Converting dihedral_charmm.txt ... Converting dihedral_class2.txt ... Converting dihedral_coeff.txt ... Converting dihedral_cosine_shift_exp.txt ... Converting dihedral_fourier.txt ... Converting dihedral_harmonic.txt ... Converting dihedral_helix.txt ... Converting dihedral_hybrid.txt ... Converting dihedral_multi_harmonic.txt ... Converting dihedral_nharmonic.txt ... Converting dihedral_none.txt ... Converting dihedral_opls.txt ... Converting dihedral_quadratic.txt ... Converting dihedral_spherical.txt ... Converting dihedral_style.txt ... Converting dihedral_table.txt ... Converting dihedral_table_cut.txt ... Converting dihedral_zero.txt ... Converting dihedrals.txt ... Converting dimension.txt ... Converting displace_atoms.txt ... Converting dump.txt ... Converting dump_cfg_uef.txt ... Converting dump_h5md.txt ... Converting dump_image.txt ... Converting dump_modify.txt ... Converting dump_molfile.txt ... Converting dump_netcdf.txt ... Converting dump_vtk.txt ... Converting echo.txt ... Converting fix.txt ... Converting fix_adapt.txt ... Converting fix_adapt_fep.txt ... Converting fix_addforce.txt ... Converting fix_addtorque.txt ... Converting fix_append_atoms.txt ... Converting fix_atc.txt ... Converting fix_atom_swap.txt ... Converting fix_ave_atom.txt ... Converting fix_ave_chunk.txt ... Converting fix_ave_correlate.txt ... Converting fix_ave_correlate_long.txt ... Converting fix_ave_histo.txt ... Converting fix_ave_time.txt ... Converting fix_aveforce.txt ... Converting fix_balance.txt ... Converting fix_bocs.txt ... Converting fix_bond_break.txt ... Converting fix_bond_create.txt ... Converting fix_bond_react.txt ... Converting fix_bond_swap.txt ... Converting fix_box_relax.txt ... Converting fix_client_md.txt ... Converting fix_cmap.txt ... Converting fix_colvars.txt ... Converting fix_controller.txt ... Converting fix_deform.txt ... Converting fix_deposit.txt ... Converting fix_dpd_energy.txt ... Converting fix_dpd_source.txt ... Converting fix_drag.txt ... Converting fix_drude.txt ... Converting fix_drude_transform.txt ... Converting fix_dt_reset.txt ... Converting fix_efield.txt ... Converting fix_ehex.txt ... Converting fix_enforce2d.txt ... Converting fix_eos_cv.txt ... Converting fix_eos_table.txt ... Converting fix_eos_table_rx.txt ... Converting fix_evaporate.txt ... Converting fix_external.txt ... Converting fix_ffl.txt ... Converting fix_filter_corotate.txt ... Converting fix_flow_gauss.txt ... Converting fix_freeze.txt ... Converting fix_gcmc.txt ... Converting fix_gld.txt ... Converting fix_gle.txt ... Converting fix_gravity.txt ... Converting fix_grem.txt ... Converting fix_halt.txt ... Converting fix_heat.txt ... Converting fix_hyper_global.txt ... Converting fix_hyper_local.txt ... Converting fix_imd.txt ... Converting fix_indent.txt ... Converting fix_ipi.txt ... Converting fix_langevin.txt ... Converting fix_langevin_drude.txt ... Converting fix_langevin_eff.txt ... Converting fix_langevin_spin.txt ... Converting fix_latte.txt ... Converting fix_lb_fluid.txt ... Converting fix_lb_momentum.txt ... Converting fix_lb_pc.txt ... Converting fix_lb_rigid_pc_sphere.txt ... Converting fix_lb_viscous.txt ... Converting fix_lineforce.txt ... Converting fix_manifoldforce.txt ... Converting fix_meso.txt ... Converting fix_meso_move.txt ... Converting fix_meso_stationary.txt ... Converting fix_modify.txt ... Converting fix_momentum.txt ... Converting fix_move.txt ... Converting fix_mscg.txt ... Converting fix_msst.txt ... Converting fix_mvv_dpd.txt ... Converting fix_neb.txt ... Converting fix_nh.txt ... Converting fix_nh_eff.txt ... Converting fix_nh_uef.txt ... Converting fix_nph_asphere.txt ... Converting fix_nph_body.txt ... Converting fix_nph_sphere.txt ... Converting fix_nphug.txt ... Converting fix_npt_asphere.txt ... Converting fix_npt_body.txt ... Converting fix_npt_sphere.txt ... Converting fix_nve.txt ... Converting fix_nve_asphere.txt ... Converting fix_nve_asphere_noforce.txt ... Converting fix_nve_awpmd.txt ... Converting fix_nve_body.txt ... Converting fix_nve_dot.txt ... Converting fix_nve_dotc_langevin.txt ... Converting fix_nve_eff.txt ... Converting fix_nve_limit.txt ... Converting fix_nve_line.txt ... Converting fix_nve_manifold_rattle.txt ... Converting fix_nve_noforce.txt ... Converting fix_nve_sphere.txt ... Converting fix_nve_spin.txt ... Converting fix_nve_tri.txt ... Converting fix_nvk.txt ... Converting fix_nvt_asphere.txt ... Converting fix_nvt_body.txt ... Converting fix_nvt_manifold_rattle.txt ... Converting fix_nvt_sllod.txt ... Converting fix_nvt_sllod_eff.txt ... Converting fix_nvt_sphere.txt ... Converting fix_oneway.txt ... Converting fix_orient.txt ... Converting fix_phonon.txt ... Converting fix_pimd.txt ... Converting fix_planeforce.txt ... Converting fix_plumed.txt ... Converting fix_poems.txt ... Converting fix_pour.txt ... Converting fix_precession_spin.txt ... Converting fix_press_berendsen.txt ... Converting fix_print.txt ... Converting fix_property_atom.txt ... Converting fix_python_invoke.txt ... Converting fix_python_move.txt ... Converting fix_qbmsst.txt ... Converting fix_qeq.txt ... Converting fix_qeq_comb.txt ... Converting fix_qeq_reax.txt ... Converting fix_qmmm.txt ... Converting fix_qtb.txt ... Converting fix_reax_bonds.txt ... Converting fix_reaxc_species.txt ... Converting fix_recenter.txt ... Converting fix_restrain.txt ... Converting fix_rhok.txt ... Converting fix_rigid.txt ... Converting fix_rigid_meso.txt ... Converting fix_rx.txt ... Converting fix_saed_vtk.txt ... Converting fix_setforce.txt ... Converting fix_shake.txt ... Converting fix_shardlow.txt ... Converting fix_smd.txt ... Converting fix_smd_adjust_dt.txt ... Converting fix_smd_integrate_tlsph.txt ... Converting fix_smd_integrate_ulsph.txt ... Converting fix_smd_move_triangulated_surface.txt ... Converting fix_smd_setvel.txt ... Converting fix_smd_wall_surface.txt ... Converting fix_spring.txt ... Converting fix_spring_chunk.txt ... Converting fix_spring_rg.txt ... Converting fix_spring_self.txt ... Converting fix_srd.txt ... Converting fix_store_force.txt ... Converting fix_store_state.txt ... Converting fix_temp_berendsen.txt ... Converting fix_temp_csvr.txt ... Converting fix_temp_rescale.txt ... Converting fix_temp_rescale_eff.txt ... Converting fix_tfmc.txt ... Converting fix_thermal_conductivity.txt ... Converting fix_ti_spring.txt ... Converting fix_tmd.txt ... Converting fix_ttm.txt ... Converting fix_tune_kspace.txt ... Converting fix_vector.txt ... Converting fix_viscosity.txt ... Converting fix_viscous.txt ... Converting fix_wall.txt ... Converting fix_wall_body_polygon.txt ... Converting fix_wall_body_polyhedron.txt ... Converting fix_wall_ees.txt ... Converting fix_wall_gran.txt ... Converting fix_wall_gran_region.txt ... Converting fix_wall_piston.txt ... Converting fix_wall_reflect.txt ... Converting fix_wall_region.txt ... Converting fix_wall_srd.txt ... Converting fixes.txt ... Converting group.txt ... Converting group2ndx.txt ... Converting hyper.txt ... Converting if.txt ... Converting improper_class2.txt ... Converting improper_coeff.txt ... Converting improper_cossq.txt ... Converting improper_cvff.txt ... Converting improper_distance.txt ... Converting improper_fourier.txt ... Converting improper_harmonic.txt ... Converting improper_hybrid.txt ... Converting improper_inversion_harmonic.txt ... Converting improper_none.txt ... Converting improper_ring.txt ... Converting improper_style.txt ... Converting improper_umbrella.txt ... Converting improper_zero.txt ... Converting impropers.txt ... Converting include.txt ... Converting info.txt ... Converting jump.txt ... Converting kspace_modify.txt ... Converting kspace_style.txt ... Converting label.txt ... Converting lammps_commands.txt ... Converting lammps_commands_angle.txt ... Converting lammps_commands_atc.txt ... Converting lammps_commands_bond.txt ... Converting lammps_commands_compute.txt ... Converting lammps_commands_dihedral.txt ... Converting lammps_commands_fix.txt ... Converting lammps_commands_improper.txt ... Converting lammps_commands_kspace.txt ... Converting lammps_commands_pair.txt ... Converting lattice.txt ... Converting log.txt ... Converting mass.txt ... Converting message.txt ... Converting min_modify.txt ... Converting min_style.txt ... Converting minimize.txt ... Converting molecule.txt ... Converting neb.txt ... Converting neigh_modify.txt ... Converting neighbor.txt ... Converting newton.txt ... Converting next.txt ... Converting package.txt ... Converting pair_adp.txt ... Converting pair_agni.txt ... Converting pair_airebo.txt ... Converting pair_atm.txt ... Converting pair_awpmd.txt ... Converting pair_beck.txt ... Converting pair_body_nparticle.txt ... Converting pair_body_rounded_polygon.txt ... Converting pair_body_rounded_polyhedron.txt ... Converting pair_bop.txt ... Converting pair_born.txt ... Converting pair_brownian.txt ... Converting pair_buck.txt ... Converting pair_buck6d_coul_gauss.txt ... Converting pair_buck_long.txt ... Converting pair_charmm.txt ... Converting pair_class2.txt ... Converting pair_coeff.txt ... Converting pair_colloid.txt ... Converting pair_comb.txt ... Converting pair_coul.txt ... Converting pair_coul_diel.txt ... Converting pair_coul_shield.txt ... Converting pair_cs.txt ... Converting pair_dipole.txt ... Converting pair_dpd.txt ... Converting pair_dpd_fdt.txt ... Converting pair_dsmc.txt ... Converting pair_eam.txt ... Converting pair_edip.txt ... Converting pair_eff.txt ... Converting pair_eim.txt ... Converting pair_exp6_rx.txt ... Converting pair_extep.txt ... Converting pair_gauss.txt ... Converting pair_gayberne.txt ... Converting pair_gran.txt ... Converting pair_gromacs.txt ... Converting pair_gw.txt ... Converting pair_hbond_dreiding.txt ... Converting pair_hybrid.txt ... Converting pair_ilp_graphene_hbn.txt ... Converting pair_kim.txt ... Converting pair_kolmogorov_crespi_full.txt ... Converting pair_kolmogorov_crespi_z.txt ... Converting pair_lcbop.txt ... Converting pair_line_lj.txt ... Converting pair_list.txt ... Converting pair_lj.txt ... Converting pair_lj96.txt ... Converting pair_lj_cubic.txt ... Converting pair_lj_expand.txt ... Converting pair_lj_long.txt ... Converting pair_lj_smooth.txt ... Converting pair_lj_smooth_linear.txt ... Converting pair_lj_soft.txt ... Converting pair_lubricate.txt ... Converting pair_lubricateU.txt ... Converting pair_mdf.txt ... Converting pair_meam.txt ... Converting pair_meam_spline.txt ... Converting pair_meam_sw_spline.txt ... Converting pair_meso.txt ... Converting pair_mgpt.txt ... Converting pair_mie.txt ... Converting pair_modify.txt ... Converting pair_momb.txt ... Converting pair_morse.txt ... Converting pair_multi_lucy.txt ... Converting pair_multi_lucy_rx.txt ... Converting pair_nb3b_harmonic.txt ... Converting pair_nm.txt ... Converting pair_none.txt ... Converting pair_oxdna.txt ... Converting pair_oxdna2.txt ... Converting pair_peri.txt ... Converting pair_polymorphic.txt ... Converting pair_python.txt ... Converting pair_quip.txt ... Converting pair_reax.txt ... Converting pair_reaxc.txt ... Converting pair_resquared.txt ... Converting pair_sdk.txt ... Converting pair_sdpd_taitwater_isothermal.txt ... Converting pair_smd_hertz.txt ... Converting pair_smd_tlsph.txt ... Converting pair_smd_triangulated_surface.txt ... Converting pair_smd_ulsph.txt ... Converting pair_smtbq.txt ... Converting pair_snap.txt ... Converting pair_soft.txt ... Converting pair_sph_heatconduction.txt ... Converting pair_sph_idealgas.txt ... Converting pair_sph_lj.txt ... Converting pair_sph_rhosum.txt ... Converting pair_sph_taitwater.txt ... Converting pair_sph_taitwater_morris.txt ... Converting pair_spin_dmi.txt ... Converting pair_spin_exchange.txt ... Converting pair_spin_magelec.txt ... Converting pair_spin_neel.txt ... Converting pair_srp.txt ... Converting pair_style.txt ... Converting pair_sw.txt ... Converting pair_table.txt ... Converting pair_table_rx.txt ... Converting pair_tersoff.txt ... Converting pair_tersoff_mod.txt ... Converting pair_tersoff_zbl.txt ... Converting pair_thole.txt ... Converting pair_tri_lj.txt ... Converting pair_ufm.txt ... Converting pair_vashishta.txt ... Converting pair_write.txt ... Converting pair_yukawa.txt ... Converting pair_yukawa_colloid.txt ... Converting pair_zbl.txt ... Converting pair_zero.txt ... Converting pairs.txt ... Converting partition.txt ... Converting prd.txt ... Converting print.txt ... Converting processors.txt ... Converting python.txt ... Converting quit.txt ... Converting read_data.txt ... Converting read_dump.txt ... Converting read_restart.txt ... Converting region.txt ... Converting replicate.txt ... Converting rerun.txt ... Converting reset_ids.txt ... Converting reset_timestep.txt ... Converting restart.txt ... Converting run.txt ... Converting run_style.txt ... Converting server.txt ... Converting server_mc.txt ... Converting server_md.txt ... Converting set.txt ... Converting shell.txt ... Converting special_bonds.txt ... Converting suffix.txt ... Converting tad.txt ... Converting temper.txt ... Converting temper_grem.txt ... Converting temper_npt.txt ... Converting thermo.txt ... Converting thermo_modify.txt ... Converting thermo_style.txt ... Converting timer.txt ... Converting timestep.txt ... Converting uncompute.txt ... Converting undump.txt ... Converting unfix.txt ... Converting units.txt ... Converting variable.txt ... Converting velocity.txt ... Converting write_coeff.txt ... Converting write_data.txt ... Converting write_dump.txt ... Converting write_restart.txt ... make[2]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/doc' make[2]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/doc' This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./developer.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) No file developer.aux. 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[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] LaTeX Warning: Reference `fig:classes' on page 3 undefined on input line 58. LaTeX Warning: Reference `fig:classes' on page 3 undefined on input line 78. LaTeX Warning: Reference `fig:classes' on page 3 undefined on input line 85. Overfull \hbox (18.02841pt too wide) in paragraph at lines 95--107 \OT1/cmr/m/n/10 ment spe-cific com-mands in the in-put script that can be in-vo ked be-fore/after/between Overfull \hbox (21.68127pt too wide) in paragraph at lines 95--107 \OT1/cmr/m/n/10 PAIR[]CLASS, BOND[]CLASS, RE-GION[]CLASS, FIX[]CLASS, COM-PUTE[ ]CLASS, LaTeX Warning: Reference `fig:classes' on page 3 undefined on input line 116. (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [3] [4 <./classes.pdf> ] Overfull \hbox (1.52841pt too wide) in paragraph at lines 163--168 []\OT1/cmr/m/n/10 The Comm class per-forms in-ter-pro-ces-sor com-mu-ni-ca-tion , typ-i-cally of ghost [5] LaTeX Warning: Reference `fig:verlet' on page 6 undefined on input line 264. LaTeX Warning: Reference `fig:verlet' on page 6 undefined on input line 331. Overfull \hbox (7.86919pt too wide) in paragraph at lines 323--338 []\OT1/cmr/m/n/10 At var-i-ous points of the timestep, fixes are in-voked, e.g. fix$\OMS/cmsy/m/n/10 !$\OT1/cmr/m/n/10 initial[]integrate(). [6] LaTeX Warning: Reference `fig:verlet' on page 7 undefined on input line 343. [7] LaTeX Warning: Reference `fig:verlet' on page 8 undefined on input line 421. [8] [9] [10] Overfull \hbox (1.49698pt too wide) in paragraph at lines 566--566 [] \OT1/cmtt/m/n/10 for (int particleInd = 0; particleInd < nlocal; ++particle Ind) {[] Overfull \hbox (43.49661pt too wide) in paragraph at lines 566--566 [] \OT1/cmtt/m/n/10 MPI_Allreduce(localAvgVel, globalAvgVel, 4, MPI_DOUBLE, MP I_SUM, world);[] [11] Overfull \hbox (3.8593pt too wide) in paragraph at lines 612--615 [][][]\OT1/cmtt/m/n/10 void copy_arrays(int i, int j, int delflag) []\OT1/cmr/m /n/10 - copy i-th per-particle Overfull \hbox (10.76607pt too wide) in paragraph at lines 638--640 [][][]\OT1/cmtt/m/n/10 memory->create(this->x, atom->nmax, 3, "FixSavePos:x");[ ]\OT1/cmr/m/n/10 . Free mem- [12] [13] [14] (./developer.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on developer.pdf (14 pages, 127801 bytes). 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This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./developer.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (./developer.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvdefinekeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty)))) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (./developer.toc) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] Overfull \hbox (18.02841pt too wide) in paragraph at lines 95--107 \OT1/cmr/m/n/10 ment spe-cific com-mands in the in-put script that can be in-vo ked be-fore/after/between Overfull \hbox (21.68127pt too wide) in paragraph at lines 95--107 \OT1/cmr/m/n/10 PAIR[]CLASS, BOND[]CLASS, RE-GION[]CLASS, FIX[]CLASS, COM-PUTE[ ]CLASS, (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) [3] [4 <./classes.pdf> ] Overfull \hbox (1.52841pt too wide) in paragraph at lines 163--168 []\OT1/cmr/m/n/10 The Comm class per-forms in-ter-pro-ces-sor com-mu-ni-ca-tion , typ-i-cally of ghost [5] Overfull \hbox (7.86919pt too wide) in paragraph at lines 323--338 []\OT1/cmr/m/n/10 At var-i-ous points of the timestep, fixes are in-voked, e.g. fix$\OMS/cmsy/m/n/10 !$\OT1/cmr/m/n/10 initial[]integrate(). [6] [7] [8] [9] [10] Overfull \hbox (1.49698pt too wide) in paragraph at lines 566--566 [] \OT1/cmtt/m/n/10 for (int particleInd = 0; particleInd < nlocal; ++particle Ind) {[] Overfull \hbox (43.49661pt too wide) in paragraph at lines 566--566 [] \OT1/cmtt/m/n/10 MPI_Allreduce(localAvgVel, globalAvgVel, 4, MPI_DOUBLE, MP I_SUM, world);[] [11] Overfull \hbox (3.8593pt too wide) in paragraph at lines 612--615 [][][]\OT1/cmtt/m/n/10 void copy_arrays(int i, int j, int delflag) []\OT1/cmr/m /n/10 - copy i-th per-particle Overfull \hbox (10.76607pt too wide) in paragraph at lines 638--640 [][][]\OT1/cmtt/m/n/10 memory->create(this->x, atom->nmax, 3, "FixSavePos:x");[ ]\OT1/cmr/m/n/10 . Free mem- [12] [13] [14] (./developer.aux) ) (see the transcript file for additional information) Output written on developer.pdf (14 pages, 133814 bytes). Transcript written on developer.log. Converting Build.txt ... Converting Build_basics.txt ... Converting Build_cmake.txt ... Converting Build_extras.txt ... Converting Build_link.txt ... Converting Build_make.txt ... Converting Build_package.txt ... Converting Build_settings.txt ... Converting Build_windows.txt ... Converting Commands.txt ... Converting Commands_all.txt ... Converting Commands_bond.txt ... Converting Commands_category.txt ... Converting Commands_compute.txt ... Converting Commands_fix.txt ... Converting Commands_input.txt ... Converting Commands_kspace.txt ... Converting Commands_pair.txt ... Converting Commands_parse.txt ... Converting Commands_structure.txt ... Converting Errors.txt ... Converting Errors_bugs.txt ... Converting Errors_common.txt ... Converting Errors_messages.txt ... Converting Errors_warnings.txt ... Converting Examples.txt ... Converting Howto.txt ... Converting Howto_2d.txt ... Converting Howto_barostat.txt ... Converting Howto_bash.txt ... Converting Howto_bioFF.txt ... Converting Howto_body.txt ... Converting Howto_chunk.txt ... Converting Howto_client_server.txt ... Converting Howto_coreshell.txt ... Converting Howto_couple.txt ... Converting Howto_diffusion.txt ... Converting Howto_dispersion.txt ... Converting Howto_drude.txt ... Converting Howto_drude2.txt ... Converting Howto_elastic.txt ... Converting Howto_github.txt ... Converting Howto_granular.txt ... Converting Howto_kappa.txt ... Converting Howto_library.txt ... Converting Howto_manifold.txt ... Converting Howto_multiple.txt ... Converting Howto_nemd.txt ... Converting Howto_output.txt ... Converting Howto_polarizable.txt ... Converting Howto_pylammps.txt ... Converting Howto_replica.txt ... Converting Howto_restart.txt ... Converting Howto_spc.txt ... Converting Howto_spherical.txt ... Converting Howto_spins.txt ... Converting Howto_temperature.txt ... Converting Howto_thermostat.txt ... Converting Howto_tip3p.txt ... Converting Howto_tip4p.txt ... Converting Howto_triclinic.txt ... Converting Howto_viscosity.txt ... Converting Howto_viz.txt ... Converting Howto_walls.txt ... Converting Install.txt ... Converting Install_git.txt ... Converting Install_linux.txt ... Converting Install_mac.txt ... Converting Install_patch.txt ... Converting Install_svn.txt ... Converting Install_tarball.txt ... Converting Install_windows.txt ... Converting Intro.txt ... Converting Intro_authors.txt ... Converting Intro_features.txt ... Converting Intro_nonfeatures.txt ... Converting Intro_opensource.txt ... Converting Intro_overview.txt ... Converting Intro_website.txt ... Converting Manual.txt ... Converting Manual_build.txt ... Converting Manual_version.txt ... Converting Modify.txt ... Converting Modify_atom.txt ... Converting Modify_body.txt ... Converting Modify_bond.txt ... Converting Modify_command.txt ... Converting Modify_compute.txt ... Converting Modify_contribute.txt ... Converting Modify_dump.txt ... Converting Modify_fix.txt ... Converting Modify_kspace.txt ... Converting Modify_min.txt ... Converting Modify_overview.txt ... Converting Modify_pair.txt ... Converting Modify_region.txt ... Converting Modify_thermo.txt ... Converting Modify_variable.txt ... Converting Packages.txt ... Converting Packages_details.txt ... Converting Packages_standard.txt ... Converting Packages_user.txt ... Converting Python_call.txt ... Converting Python_examples.txt ... Converting Python_head.txt ... Converting Python_install.txt ... Converting Python_library.txt ... Converting Python_mpi.txt ... Converting Python_overview.txt ... Converting Python_pylammps.txt ... Converting Python_run.txt ... Converting Python_shlib.txt ... Converting Python_test.txt ... Converting Run_basics.txt ... Converting Run_head.txt ... Converting Run_options.txt ... Converting Run_output.txt ... Converting Run_windows.txt ... Converting Speed.txt ... Converting Speed_bench.txt ... Converting Speed_compare.txt ... Converting Speed_gpu.txt ... Converting Speed_intel.txt ... Converting Speed_kokkos.txt ... Converting Speed_measure.txt ... Converting Speed_omp.txt ... Converting Speed_opt.txt ... Converting Speed_packages.txt ... Converting Speed_tips.txt ... Converting Tools.txt ... Converting angle_charmm.txt ... Converting angle_class2.txt ... Converting angle_coeff.txt ... Converting angle_cosine.txt ... Converting angle_cosine_buck6d.txt ... Converting angle_cosine_delta.txt ... Converting angle_cosine_periodic.txt ... Converting angle_cosine_shift.txt ... Converting angle_cosine_shift_exp.txt ... Converting angle_cosine_squared.txt ... Converting angle_dipole.txt ... Converting angle_fourier.txt ... Converting angle_fourier_simple.txt ... Converting angle_harmonic.txt ... Converting angle_hybrid.txt ... Converting angle_none.txt ... Converting angle_quartic.txt ... Converting angle_sdk.txt ... Converting angle_style.txt ... Converting angle_table.txt ... Converting angle_zero.txt ... Converting angles.txt ... Converting atom_modify.txt ... Converting atom_style.txt ... Converting balance.txt ... Converting bond_class2.txt ... Converting bond_coeff.txt ... Converting bond_fene.txt ... Converting bond_fene_expand.txt ... Converting bond_gromos.txt ... Converting bond_harmonic.txt ... Converting bond_harmonic_shift.txt ... Converting bond_harmonic_shift_cut.txt ... Converting bond_hybrid.txt ... Converting bond_morse.txt ... Converting bond_none.txt ... Converting bond_nonlinear.txt ... Converting bond_oxdna.txt ... Converting bond_quartic.txt ... Converting bond_style.txt ... Converting bond_table.txt ... Converting bond_write.txt ... Converting bond_zero.txt ... Converting bonds.txt ... Converting boundary.txt ... Converting box.txt ... Converting change_box.txt ... Converting clear.txt ... Converting comm_modify.txt ... Converting comm_style.txt ... Converting commands_list.txt ... Converting compute.txt ... Converting compute_ackland_atom.txt ... Converting compute_adf.txt ... Converting compute_angle.txt ... Converting compute_angle_local.txt ... Converting compute_angmom_chunk.txt ... Converting compute_basal_atom.txt ... Converting compute_body_local.txt ... Converting compute_bond.txt ... Converting compute_bond_local.txt ... Converting compute_centro_atom.txt ... Converting compute_chunk_atom.txt ... Converting compute_chunk_spread_atom.txt ... Converting compute_cluster_atom.txt ... Converting compute_cna_atom.txt ... Converting compute_cnp_atom.txt ... Converting compute_com.txt ... Converting compute_com_chunk.txt ... Converting compute_contact_atom.txt ... Converting compute_coord_atom.txt ... Converting compute_damage_atom.txt ... Converting compute_dihedral.txt ... Converting compute_dihedral_local.txt ... Converting compute_dilatation_atom.txt ... Converting compute_dipole_chunk.txt ... Converting compute_displace_atom.txt ... Converting compute_dpd.txt ... Converting compute_dpd_atom.txt ... Converting compute_edpd_temp_atom.txt ... Converting compute_entropy_atom.txt ... Converting compute_erotate_asphere.txt ... Converting compute_erotate_rigid.txt ... Converting compute_erotate_sphere.txt ... Converting compute_erotate_sphere_atom.txt ... Converting compute_event_displace.txt ... Converting compute_fep.txt ... Converting compute_global_atom.txt ... Converting compute_group_group.txt ... Converting compute_gyration.txt ... Converting compute_gyration_chunk.txt ... Converting compute_heat_flux.txt ... Converting compute_hexorder_atom.txt ... Converting compute_improper.txt ... Converting compute_improper_local.txt ... Converting compute_inertia_chunk.txt ... Converting compute_ke.txt ... Converting compute_ke_atom.txt ... Converting compute_ke_atom_eff.txt ... Converting compute_ke_eff.txt ... Converting compute_ke_rigid.txt ... Converting compute_meso_e_atom.txt ... Converting compute_meso_rho_atom.txt ... Converting compute_meso_t_atom.txt ... Converting compute_modify.txt ... Converting compute_msd.txt ... Converting compute_msd_chunk.txt ... Converting compute_msd_nongauss.txt ... Converting compute_omega_chunk.txt ... Converting compute_orientorder_atom.txt ... Converting compute_pair.txt ... Converting compute_pair_local.txt ... Converting compute_pe.txt ... Converting compute_pe_atom.txt ... Converting compute_plasticity_atom.txt ... Converting compute_pressure.txt ... Converting compute_pressure_cylinder.txt ... Converting compute_pressure_uef.txt ... Converting compute_property_atom.txt ... Converting compute_property_chunk.txt ... Converting compute_property_local.txt ... Converting compute_ptm_atom.txt ... Converting compute_rdf.txt ... Converting compute_reduce.txt ... Converting compute_reduce_chunk.txt ... Converting compute_rigid_local.txt ... Converting compute_saed.txt ... Converting compute_slice.txt ... Converting compute_smd_contact_radius.txt ... Converting compute_smd_damage.txt ... Converting compute_smd_hourglass_error.txt ... Converting compute_smd_internal_energy.txt ... Converting compute_smd_plastic_strain.txt ... Converting compute_smd_plastic_strain_rate.txt ... Converting compute_smd_rho.txt ... Converting compute_smd_tlsph_defgrad.txt ... Converting compute_smd_tlsph_dt.txt ... Converting compute_smd_tlsph_num_neighs.txt ... Converting compute_smd_tlsph_shape.txt ... Converting compute_smd_tlsph_strain.txt ... Converting compute_smd_tlsph_strain_rate.txt ... Converting compute_smd_tlsph_stress.txt ... Converting compute_smd_triangle_vertices.txt ... Converting compute_smd_ulsph_num_neighs.txt ... Converting compute_smd_ulsph_strain.txt ... Converting compute_smd_ulsph_strain_rate.txt ... Converting compute_smd_ulsph_stress.txt ... Converting compute_smd_vol.txt ... Converting compute_sna_atom.txt ... Converting compute_spin.txt ... Converting compute_stress_atom.txt ... Converting compute_stress_mop.txt ... Converting compute_tally.txt ... Converting compute_tdpd_cc_atom.txt ... Converting compute_temp.txt ... Converting compute_temp_asphere.txt ... Converting compute_temp_body.txt ... Converting compute_temp_chunk.txt ... Converting compute_temp_com.txt ... Converting compute_temp_cs.txt ... Converting compute_temp_deform.txt ... Converting compute_temp_deform_eff.txt ... Converting compute_temp_drude.txt ... Converting compute_temp_eff.txt ... Converting compute_temp_partial.txt ... Converting compute_temp_profile.txt ... Converting compute_temp_ramp.txt ... Converting compute_temp_region.txt ... Converting compute_temp_region_eff.txt ... Converting compute_temp_rotate.txt ... Converting compute_temp_sphere.txt ... Converting compute_temp_uef.txt ... Converting compute_ti.txt ... Converting compute_torque_chunk.txt ... Converting compute_vacf.txt ... Converting compute_vcm_chunk.txt ... Converting compute_voronoi_atom.txt ... Converting compute_xrd.txt ... Converting computes.txt ... Converting create_atoms.txt ... Converting create_bonds.txt ... Converting create_box.txt ... Converting delete_atoms.txt ... Converting delete_bonds.txt ... Converting dielectric.txt ... Converting dihedral_charmm.txt ... Converting dihedral_class2.txt ... Converting dihedral_coeff.txt ... Converting dihedral_cosine_shift_exp.txt ... Converting dihedral_fourier.txt ... Converting dihedral_harmonic.txt ... Converting dihedral_helix.txt ... Converting dihedral_hybrid.txt ... Converting dihedral_multi_harmonic.txt ... Converting dihedral_nharmonic.txt ... Converting dihedral_none.txt ... Converting dihedral_opls.txt ... Converting dihedral_quadratic.txt ... Converting dihedral_spherical.txt ... Converting dihedral_style.txt ... Converting dihedral_table.txt ... Converting dihedral_table_cut.txt ... Converting dihedral_zero.txt ... Converting dihedrals.txt ... Converting dimension.txt ... Converting displace_atoms.txt ... Converting dump.txt ... Converting dump_cfg_uef.txt ... Converting dump_h5md.txt ... Converting dump_image.txt ... Converting dump_modify.txt ... Converting dump_molfile.txt ... Converting dump_netcdf.txt ... Converting dump_vtk.txt ... Converting echo.txt ... Converting fix.txt ... Converting fix_adapt.txt ... Converting fix_adapt_fep.txt ... Converting fix_addforce.txt ... Converting fix_addtorque.txt ... Converting fix_append_atoms.txt ... Converting fix_atc.txt ... Converting fix_atom_swap.txt ... Converting fix_ave_atom.txt ... Converting fix_ave_chunk.txt ... Converting fix_ave_correlate.txt ... Converting fix_ave_correlate_long.txt ... Converting fix_ave_histo.txt ... Converting fix_ave_time.txt ... Converting fix_aveforce.txt ... Converting fix_balance.txt ... Converting fix_bocs.txt ... Converting fix_bond_break.txt ... Converting fix_bond_create.txt ... Converting fix_bond_react.txt ... Converting fix_bond_swap.txt ... Converting fix_box_relax.txt ... Converting fix_client_md.txt ... Converting fix_cmap.txt ... Converting fix_colvars.txt ... Converting fix_controller.txt ... Converting fix_deform.txt ... Converting fix_deposit.txt ... Converting fix_dpd_energy.txt ... Converting fix_dpd_source.txt ... Converting fix_drag.txt ... Converting fix_drude.txt ... Converting fix_drude_transform.txt ... Converting fix_dt_reset.txt ... Converting fix_efield.txt ... Converting fix_ehex.txt ... Converting fix_enforce2d.txt ... Converting fix_eos_cv.txt ... Converting fix_eos_table.txt ... Converting fix_eos_table_rx.txt ... Converting fix_evaporate.txt ... Converting fix_external.txt ... Converting fix_ffl.txt ... Converting fix_filter_corotate.txt ... Converting fix_flow_gauss.txt ... Converting fix_freeze.txt ... Converting fix_gcmc.txt ... Converting fix_gld.txt ... Converting fix_gle.txt ... Converting fix_gravity.txt ... Converting fix_grem.txt ... Converting fix_halt.txt ... Converting fix_heat.txt ... Converting fix_hyper_global.txt ... Converting fix_hyper_local.txt ... Converting fix_imd.txt ... Converting fix_indent.txt ... Converting fix_ipi.txt ... Converting fix_langevin.txt ... Converting fix_langevin_drude.txt ... Converting fix_langevin_eff.txt ... Converting fix_langevin_spin.txt ... Converting fix_latte.txt ... Converting fix_lb_fluid.txt ... Converting fix_lb_momentum.txt ... Converting fix_lb_pc.txt ... Converting fix_lb_rigid_pc_sphere.txt ... Converting fix_lb_viscous.txt ... Converting fix_lineforce.txt ... Converting fix_manifoldforce.txt ... Converting fix_meso.txt ... Converting fix_meso_move.txt ... Converting fix_meso_stationary.txt ... Converting fix_modify.txt ... Converting fix_momentum.txt ... Converting fix_move.txt ... Converting fix_mscg.txt ... Converting fix_msst.txt ... Converting fix_mvv_dpd.txt ... Converting fix_neb.txt ... Converting fix_nh.txt ... Converting fix_nh_eff.txt ... Converting fix_nh_uef.txt ... Converting fix_nph_asphere.txt ... Converting fix_nph_body.txt ... Converting fix_nph_sphere.txt ... Converting fix_nphug.txt ... Converting fix_npt_asphere.txt ... Converting fix_npt_body.txt ... Converting fix_npt_sphere.txt ... Converting fix_nve.txt ... Converting fix_nve_asphere.txt ... Converting fix_nve_asphere_noforce.txt ... Converting fix_nve_awpmd.txt ... Converting fix_nve_body.txt ... Converting fix_nve_dot.txt ... Converting fix_nve_dotc_langevin.txt ... Converting fix_nve_eff.txt ... Converting fix_nve_limit.txt ... Converting fix_nve_line.txt ... Converting fix_nve_manifold_rattle.txt ... Converting fix_nve_noforce.txt ... Converting fix_nve_sphere.txt ... Converting fix_nve_spin.txt ... Converting fix_nve_tri.txt ... Converting fix_nvk.txt ... Converting fix_nvt_asphere.txt ... Converting fix_nvt_body.txt ... Converting fix_nvt_manifold_rattle.txt ... Converting fix_nvt_sllod.txt ... Converting fix_nvt_sllod_eff.txt ... Converting fix_nvt_sphere.txt ... Converting fix_oneway.txt ... Converting fix_orient.txt ... Converting fix_phonon.txt ... Converting fix_pimd.txt ... Converting fix_planeforce.txt ... Converting fix_plumed.txt ... Converting fix_poems.txt ... Converting fix_pour.txt ... Converting fix_precession_spin.txt ... Converting fix_press_berendsen.txt ... Converting fix_print.txt ... Converting fix_property_atom.txt ... Converting fix_python_invoke.txt ... Converting fix_python_move.txt ... Converting fix_qbmsst.txt ... Converting fix_qeq.txt ... Converting fix_qeq_comb.txt ... Converting fix_qeq_reax.txt ... Converting fix_qmmm.txt ... Converting fix_qtb.txt ... Converting fix_reax_bonds.txt ... Converting fix_reaxc_species.txt ... Converting fix_recenter.txt ... Converting fix_restrain.txt ... Converting fix_rhok.txt ... Converting fix_rigid.txt ... Converting fix_rigid_meso.txt ... Converting fix_rx.txt ... Converting fix_saed_vtk.txt ... Converting fix_setforce.txt ... Converting fix_shake.txt ... Converting fix_shardlow.txt ... Converting fix_smd.txt ... Converting fix_smd_adjust_dt.txt ... Converting fix_smd_integrate_tlsph.txt ... Converting fix_smd_integrate_ulsph.txt ... Converting fix_smd_move_triangulated_surface.txt ... Converting fix_smd_setvel.txt ... Converting fix_smd_wall_surface.txt ... Converting fix_spring.txt ... Converting fix_spring_chunk.txt ... Converting fix_spring_rg.txt ... Converting fix_spring_self.txt ... Converting fix_srd.txt ... Converting fix_store_force.txt ... Converting fix_store_state.txt ... Converting fix_temp_berendsen.txt ... Converting fix_temp_csvr.txt ... Converting fix_temp_rescale.txt ... Converting fix_temp_rescale_eff.txt ... Converting fix_tfmc.txt ... Converting fix_thermal_conductivity.txt ... Converting fix_ti_spring.txt ... Converting fix_tmd.txt ... Converting fix_ttm.txt ... Converting fix_tune_kspace.txt ... Converting fix_vector.txt ... Converting fix_viscosity.txt ... Converting fix_viscous.txt ... Converting fix_wall.txt ... Converting fix_wall_body_polygon.txt ... Converting fix_wall_body_polyhedron.txt ... Converting fix_wall_ees.txt ... Converting fix_wall_gran.txt ... Converting fix_wall_gran_region.txt ... Converting fix_wall_piston.txt ... Converting fix_wall_reflect.txt ... Converting fix_wall_region.txt ... Converting fix_wall_srd.txt ... Converting fixes.txt ... Converting group.txt ... Converting group2ndx.txt ... Converting hyper.txt ... Converting if.txt ... Converting improper_class2.txt ... Converting improper_coeff.txt ... Converting improper_cossq.txt ... Converting improper_cvff.txt ... Converting improper_distance.txt ... Converting improper_fourier.txt ... Converting improper_harmonic.txt ... Converting improper_hybrid.txt ... Converting improper_inversion_harmonic.txt ... Converting improper_none.txt ... Converting improper_ring.txt ... Converting improper_style.txt ... Converting improper_umbrella.txt ... Converting improper_zero.txt ... Converting impropers.txt ... Converting include.txt ... Converting info.txt ... Converting jump.txt ... Converting kspace_modify.txt ... Converting kspace_style.txt ... Converting label.txt ... Converting lammps_commands.txt ... Converting lammps_commands_angle.txt ... Converting lammps_commands_atc.txt ... Converting lammps_commands_bond.txt ... Converting lammps_commands_compute.txt ... Converting lammps_commands_dihedral.txt ... Converting lammps_commands_fix.txt ... Converting lammps_commands_improper.txt ... Converting lammps_commands_kspace.txt ... Converting lammps_commands_pair.txt ... Converting lattice.txt ... Converting log.txt ... Converting mass.txt ... Converting message.txt ... Converting min_modify.txt ... Converting min_style.txt ... Converting minimize.txt ... Converting molecule.txt ... Converting neb.txt ... Converting neigh_modify.txt ... Converting neighbor.txt ... Converting newton.txt ... Converting next.txt ... Converting package.txt ... Converting pair_adp.txt ... Converting pair_agni.txt ... Converting pair_airebo.txt ... Converting pair_atm.txt ... Converting pair_awpmd.txt ... Converting pair_beck.txt ... Converting pair_body_nparticle.txt ... Converting pair_body_rounded_polygon.txt ... Converting pair_body_rounded_polyhedron.txt ... Converting pair_bop.txt ... Converting pair_born.txt ... Converting pair_brownian.txt ... Converting pair_buck.txt ... Converting pair_buck6d_coul_gauss.txt ... Converting pair_buck_long.txt ... Converting pair_charmm.txt ... Converting pair_class2.txt ... Converting pair_coeff.txt ... Converting pair_colloid.txt ... Converting pair_comb.txt ... Converting pair_coul.txt ... Converting pair_coul_diel.txt ... Converting pair_coul_shield.txt ... Converting pair_cs.txt ... Converting pair_dipole.txt ... Converting pair_dpd.txt ... Converting pair_dpd_fdt.txt ... Converting pair_dsmc.txt ... Converting pair_eam.txt ... Converting pair_edip.txt ... Converting pair_eff.txt ... Converting pair_eim.txt ... Converting pair_exp6_rx.txt ... Converting pair_extep.txt ... Converting pair_gauss.txt ... Converting pair_gayberne.txt ... Converting pair_gran.txt ... Converting pair_gromacs.txt ... Converting pair_gw.txt ... Converting pair_hbond_dreiding.txt ... Converting pair_hybrid.txt ... Converting pair_ilp_graphene_hbn.txt ... Converting pair_kim.txt ... Converting pair_kolmogorov_crespi_full.txt ... Converting pair_kolmogorov_crespi_z.txt ... Converting pair_lcbop.txt ... Converting pair_line_lj.txt ... Converting pair_list.txt ... Converting pair_lj.txt ... Converting pair_lj96.txt ... Converting pair_lj_cubic.txt ... Converting pair_lj_expand.txt ... Converting pair_lj_long.txt ... Converting pair_lj_smooth.txt ... Converting pair_lj_smooth_linear.txt ... Converting pair_lj_soft.txt ... Converting pair_lubricate.txt ... Converting pair_lubricateU.txt ... Converting pair_mdf.txt ... Converting pair_meam.txt ... Converting pair_meam_spline.txt ... Converting pair_meam_sw_spline.txt ... Converting pair_meso.txt ... Converting pair_mgpt.txt ... Converting pair_mie.txt ... Converting pair_modify.txt ... Converting pair_momb.txt ... Converting pair_morse.txt ... Converting pair_multi_lucy.txt ... Converting pair_multi_lucy_rx.txt ... Converting pair_nb3b_harmonic.txt ... Converting pair_nm.txt ... Converting pair_none.txt ... Converting pair_oxdna.txt ... Converting pair_oxdna2.txt ... Converting pair_peri.txt ... Converting pair_polymorphic.txt ... Converting pair_python.txt ... Converting pair_quip.txt ... Converting pair_reax.txt ... Converting pair_reaxc.txt ... Converting pair_resquared.txt ... Converting pair_sdk.txt ... Converting pair_sdpd_taitwater_isothermal.txt ... Converting pair_smd_hertz.txt ... Converting pair_smd_tlsph.txt ... Converting pair_smd_triangulated_surface.txt ... Converting pair_smd_ulsph.txt ... Converting pair_smtbq.txt ... Converting pair_snap.txt ... Converting pair_soft.txt ... Converting pair_sph_heatconduction.txt ... Converting pair_sph_idealgas.txt ... Converting pair_sph_lj.txt ... Converting pair_sph_rhosum.txt ... Converting pair_sph_taitwater.txt ... Converting pair_sph_taitwater_morris.txt ... Converting pair_spin_dmi.txt ... Converting pair_spin_exchange.txt ... Converting pair_spin_magelec.txt ... Converting pair_spin_neel.txt ... Converting pair_srp.txt ... Converting pair_style.txt ... Converting pair_sw.txt ... Converting pair_table.txt ... Converting pair_table_rx.txt ... Converting pair_tersoff.txt ... Converting pair_tersoff_mod.txt ... Converting pair_tersoff_zbl.txt ... Converting pair_thole.txt ... Converting pair_tri_lj.txt ... Converting pair_ufm.txt ... Converting pair_vashishta.txt ... Converting pair_write.txt ... Converting pair_yukawa.txt ... Converting pair_yukawa_colloid.txt ... Converting pair_zbl.txt ... Converting pair_zero.txt ... Converting pairs.txt ... Converting partition.txt ... Converting prd.txt ... Converting print.txt ... Converting processors.txt ... Converting python.txt ... Converting quit.txt ... Converting read_data.txt ... Converting read_dump.txt ... Converting read_restart.txt ... Converting region.txt ... Converting replicate.txt ... Converting rerun.txt ... Converting reset_ids.txt ... Converting reset_timestep.txt ... Converting restart.txt ... Converting run.txt ... Converting run_style.txt ... Converting server.txt ... Converting server_mc.txt ... Converting server_md.txt ... Converting set.txt ... Converting shell.txt ... Converting special_bonds.txt ... Converting suffix.txt ... Converting tad.txt ... Converting temper.txt ... Converting temper_grem.txt ... Converting temper_npt.txt ... Converting thermo.txt ... Converting thermo_modify.txt ... Converting thermo_style.txt ... Converting timer.txt ... Converting timestep.txt ... Converting uncompute.txt ... Converting undump.txt ... Converting unfix.txt ... Converting units.txt ... Converting variable.txt ... Converting velocity.txt ... Converting write_coeff.txt ... Converting write_data.txt ... Converting write_dump.txt ... Converting write_restart.txt ... PAGES: 2442 BYTES: 16533354 make[2]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/doc' make[1]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' dh_auto_build -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build -Nlammps-doc -Nlammps-data cd debian/build && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' /usr/bin/cmake -S"/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" -B"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/meam.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake" --color= Scanning dependencies of target meam make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' Scanning dependencies of target awpmd make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' Scanning dependencies of target h5md make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build [ 0%] Building Fortran object CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_data.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_data.F" -o "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_data.F.o" make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 0%] Building CXX object CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_dens_final.F" -o "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_dens_final.F.o" [ 0%] Linking C static library libh5md.a /usr/bin/cmake -P CMakeFiles/h5md.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/h5md.dir/link.txt --verbose=1 /usr/bin/ar qc libh5md.a 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_force.F" -o "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_force.F.o" Scanning dependencies of target gpu make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 0%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_answer.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_answer.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_answer.cpp" Scanning dependencies of target atc make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 0%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_answer.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_answer.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 0%] Building Fortran object CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_done.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_done.F" -o "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_done.F.o" [ 0%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.cpp" [ 1%] Building Fortran object CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_global.F.o /usr/bin/gfortran -DFFT_FFTW 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_global.F" -o "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_global.F.o" [ 1%] Building Fortran object CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_param.F.o /usr/bin/gfortran -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_param.F" -o "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/meam_setup_param.F.o" [ 1%] Linking Fortran static library libmeam.a /usr/bin/cmake -P CMakeFiles/meam.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/meam.dir/link.txt --verbose=1 /usr/bin/ar qc libmeam.a "CMakeFiles/meam.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam/fm_exp.c.o" 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'/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color= Scanning dependencies of target poems make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 1%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 1%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body23joint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body23joint.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/body23joint.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/colmatmap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/eulerparameters.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/eulerparameters.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/eulerparameters.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 1%] Building CXX object CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/fastmatrixops.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/freebodyjoint.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/freebodyjoint.cpp" [ 1%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/inertialframe.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/inertialframe.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/inertialframe.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp" /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Vector_Nt&}; _Tp = Vector_Nt; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 [ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/joint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/joint.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/joint.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat3x3.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat3x3.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat3x3.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat4x4.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat4x4.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat4x4.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat6x6.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat6x6.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mat6x6.cpp" /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {WavePacket}; _Tp = WavePacket; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'int AWPMD_split::add_split(Vector_3&, Vector_3&, double&, double&, Vector_2&, double, double, int)': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/matrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/matrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/matrix.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/matrixfun.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mixedjoint.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/mixedjoint.cpp" [ 2%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/norm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/norm.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onbody.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onbody.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onbody.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onfunctions.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onfunctions.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onfunctions.cpp" [ 2%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onsolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onsolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/onsolver.cpp" [ 3%] Linking CXX static library libawpmd.a /usr/bin/cmake -P CMakeFiles/awpmd.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/awpmd.dir/link.txt --verbose=1 /usr/bin/ar qc libawpmd.a "CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/src/logexc.cpp.o" "CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.cpp.o" "CMakeFiles/awpmd.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" /usr/bin/ranlib libawpmd.a make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 3%] Built target awpmd make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= Scanning dependencies of target ocl_get_devices make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 3%] Building CXX object CMakeFiles/ocl_get_devices.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DUCL_OPENCL -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/ocl_get_devices.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:35, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 3%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingEnergy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingEnergy.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/particle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/particle.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/particle.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp:25: /usr/include/c++/8/bits/stl_vector.h: In member function 'void ucl_opencl::UCL_Device::add_properties(cl_device_id)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 3%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemsobject.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemstreenode.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/poemstreenode.cpp" [ 3%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/point.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/point.cpp" [ 3%] Linking CXX executable ocl_get_devices /usr/bin/cmake -E cmake_link_script CMakeFiles/ocl_get_devices.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -rdynamic "CMakeFiles/ocl_get_devices.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ucl_get_devices.cpp.o" -o ocl_get_devices -lOpenCL [ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/prismaticjoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/prismaticjoint.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/prismaticjoint.cpp" make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 4%] Built target ocl_get_devices [ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/revolutejoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/revolutejoint.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/revolutejoint.cpp" [ 4%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rowmatrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/rowmatrix.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/solver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/solver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/solver.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/sphericaljoint.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/sphericaljoint.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/sphericaljoint.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/system.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect6.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/vect6.cpp" [ 4%] Building CXX object CMakeFiles/poems.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems/virtualcolmatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 4%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMass.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp" [ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_beck_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 5%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_coul_wolf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_born_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_buck_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp" [ 6%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_charmm_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentum.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_colloid_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp" [ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_debye_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Coupling.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_dsf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp" [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_cs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::add(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp" /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp" /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp:16: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Method.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_Transfer.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp" /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:28, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp:16: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ucl_opencl::OCLProperties&}; _Tp = ucl_opencl::OCLProperties; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp" In file included from /usr/include/c++/8/vector:64, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:28, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:28, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.cpp:16: /usr/include/c++/8/bits/stl_vector.h: In member function 'void ucl_opencl::UCL_Device::add_properties(cl_device_id)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomToMoleculeTransfer.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/BodyForce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/BodyForce.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/BodyForce.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_lj_sf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp" [ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dipole.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dipole_long_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp" [ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_dpd.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_dpd_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp" [ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CBLattice.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_alloy_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 8%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp" [ 8%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CauchyBorn.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CauchyBorn.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CauchyBorn.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CbPotential.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CbPotential.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/CbPotential.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_eam_fs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp" [ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gauss_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.cpp:27: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 9%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp" [ 9%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ConcentrationRegulator.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_gayberne_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/set:60, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair, double> >; _KeyOfValue = std::_Select1st, double> > >; _Compare = std::less; _Alloc = std::allocator, double> > >]': /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator, double> > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp" In file included from /usr/include/c++/8/map:61, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/8/bits/stl_map.h: In member function 'virtual void ATC::ChargeRegulatorMethodEffectiveCharge::initialize()': /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator, double> > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj96_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp" [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp" [ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_class2_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp" [ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronChargeDensity.cpp" [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp" [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_debye_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp" [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronDragPower.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElasticTimeIntegrator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp" [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 10%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronFlux.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_coul_msm_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 10%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatCapacity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatCapacity.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_cubic_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_dsf_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatFlux.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatFlux.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronHeatFlux.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ElectronPhononExchange.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_coul_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_expand_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp" [ 11%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_gromacs_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp" [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_charge.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_lj_sdk_long_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 11%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp" [ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp" [ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_mie_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_morse_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp" [ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_device.h:35, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_kernel.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor_shared.cpp:17: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_neighbor.cpp:18: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp" [ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.cpp:25: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm.h:20, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_pppm_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/map:60, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair, double> >; _KeyOfValue = std::_Select1st, double> > >; _Compare = std::less; _Alloc = std::allocator, double> > >]': /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator, double> > >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp" In file included from /usr/include/c++/8/map:61, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/8/bits/stl_map.h: In member function 'void ATC::ExtrinsicModelElectrostatic::add_charged_surface(const string&, double)': /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree, double> >, std::_Select1st, double> > >, std::less, std::allocator, double> > > >::const_iterator' {aka 'std::_Rb_tree_const_iterator, double> > >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.cpp:27: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_ellipsoid.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_re_squared_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModel.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 12%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp" [ 12%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.cpp" [ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_soft_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp" [ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_sw_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Interpolate.cpp" [ 13%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 13%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp" [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_table_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Engine.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Element.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FE_Mesh.cpp:2: /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_mod_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp" [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldEulerIntegrator.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Function.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FundamentalAtomicQuantity.cpp" [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_tersoff_zbl_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.h:21, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.cpp:26: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/FieldManager.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm.h:21, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_ufm_ext.cpp:22: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp" [ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/InterscaleOperators.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ImplicitSolveOperator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]': /usr/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, std::pair)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/GhostManager.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]': /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, std::pair)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1921:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'int ATC::GhostModifierDampedHarmonicLayers::find_layers()': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_three.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_vashishta_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KernelFunction.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KernelFunction.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Node&}; _Tp = Node; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp" /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val]': /usr/include/c++/8/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Node; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __heap_select(_RandomAccessIterator __first, ^~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__heap_select(__first, __middle, __last, __comp); ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In constructor 'KD_Tree::KD_Tree(std::vector*, std::vector > >*, int)': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:161:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return __find_if(__first, __last, __pred, ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_algo.h:161:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 return __find_if(__first, __last, __pred, ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ std::__iterator_category(__first)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/vector.tcc: In static member function 'static KD_Tree* KD_Tree::create_KD_tree(int, int, const DENS_MAT*, int, const ATC_matrix::Array2D&)': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KD_Tree.cpp:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 14%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_colloid_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 15%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_yukawa_ext.cpp:20: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ [ 16%] Building CXX object CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DNC_64BIT_DATA=0x0020 -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/gpu" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/gpu.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp" In file included from /usr/include/CL/cl.h:32, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_macros.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/geryon/ocl_timer.h:27, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_atom.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_device.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_base_atomic.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.h:19, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/gpu/lal_zbl.cpp:24: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/KinetoThermostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, 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"CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Material.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Material.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Kinetostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LinearSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MeshReader.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PaqAtcUtility.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PaqAtcUtility.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp: In member function 'void ATC::OutputManager::read_restart_file(std::__cxx11::string, ATC::RESTART_LIST*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp:164:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&myVal,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParDiagonalMatrix.cpp" [ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp:5: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp" [ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SparseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SparseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SparseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SparseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/OutputManager.cpp:5: /usr/include/c++/8/bits/stl_vector.h: In member function 'void ATC::OutputManager::write_data(double, ATC::OUTPUT_LIST*, const int*)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PolynomialSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PrescribedDataManager.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PrescribedDataManager.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PoissonSolver.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Quadrature.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PhysicsModel.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SpeciesTimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:17, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array2D.h:9, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeFilter.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeFilter.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeFilter.cpp" [ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Matrix.h:3, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/DenseMatrix.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixLibrary.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TimeIntegrator.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.h:5, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ThermalTimeIntegrator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP 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-DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ViscousStress.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ViscousStress.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/AtomicRegulator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.h:4, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Thermostat.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationChargeDiffusion.cpp" [ 18%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationDiffusion.cpp" In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronContinuity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationElectronTemperature.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.h:8, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp:2: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.h:11, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.h:11, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp:2: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Utility.h:15, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/MatrixDef.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/Array.h:10, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/ATC_TypeDefs.h:14, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/LammpsInterface.h:25, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantity.h:7, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/PerAtomQuantityLibrary.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferOperator.h:6, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.h:11, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/TransferLibrary.cpp:2: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/atc.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc/WeakEquationMassDiffusion.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_deprecated.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_deprecated.cpp" [ 18%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp: In member function 'virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp:338:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp:347:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_hybrid.cpp:350:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp" [ 18%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_map.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_map.cpp" [ 18%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp: In member function 'virtual void LAMMPS_NS::AngleZero::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/angle_zero.cpp:133:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_atomic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_atomic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_atomic.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_line.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_line.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/atom_vec_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/balance.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/balance.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_deprecated.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp" [ 19%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/change_box.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/change_box.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/change_box.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp: In member function 'virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp:339:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp:348:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_hybrid.cpp:351:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/citeme.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/citeme.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/citeme.cpp" [ 20%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp: In member function 'virtual void LAMMPS_NS::BondZero::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/bond_zero.cpp:131:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/comm_brick.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_cluster_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_cluster_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_cna_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_coord_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_coord_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_displace_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_displace_atom.cpp" [ 21%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_erotate_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_gyration.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_gyration.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_gyration_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_improper_local.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_improper_local.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_inertia_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_msd_chunk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_msd_chunk.cpp" [ 22%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_omega_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pe.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pe.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_pe_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_property_chunk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_property_chunk.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_property_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_rdf.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_reduce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_reduce_region.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_reduce_region.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_slice.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_stress_atom.cpp" [ 23%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp_region.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp_region.cpp" [ 24%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/compute_temp_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/delete_atoms.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/delete_atoms.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/delete_bonds.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/delete_bonds.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/delete_bonds.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/displace_atoms.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/displace_atoms.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_hybrid.cpp: In member function 'virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_hybrid.cpp:323:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_hybrid.cpp:332:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dihedral_hybrid.cpp:335:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/domain.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/domain.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/domain.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump.cpp" [ 25%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_xyz.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/dump_xyz.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/error.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/error.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/error.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/finish.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_adapt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_addforce.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_addforce.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_atom.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_chunk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_chunk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_chunk.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp" [ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_chunk.cpp: In member function 'virtual void LAMMPS_NS::FixAveChunk::end_of_step()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_chunk.cpp:1057:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_correlate.cpp:537:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp: In member function 'virtual void LAMMPS_NS::FixAveHisto::end_of_step()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo.cpp:828:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp: In member function 'virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_histo_weight.cpp:499:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_aveforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_aveforce.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_aveforce.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_balance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_box_relax.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_box_relax.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp:700:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_vector(LAMMPS_NS::bigint)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_ave_time.cpp:911:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_controller.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_controller.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_controller.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_deform.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_enforce2d.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_enforce2d.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_external.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_external.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_external.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_gravity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_group.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_group.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_halt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_halt.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_halt.cpp" [ 27%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_heat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_heat.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_heat.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_indent.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_indent.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_langevin.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_minimize.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_minimize.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_momentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_momentum.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_move.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_npt.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_npt.cpp" [ 28%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_npt_sphere.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_planeforce.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_planeforce.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_press_berendsen.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_recenter.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_recenter.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_respa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_restrain.cpp" [ 29%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_setforce.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_store.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_store.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_store_force.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_temp_rescale.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_temp_rescale.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_tmd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_tmd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_tmd.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_vector.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_vector.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_viscous.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_viscous.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_viscous.cpp" [ 30%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_reflect.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_reflect.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_region.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_region.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/fix_wall_region.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/force.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/image.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp: In member function 'void LAMMPS_NS::Group::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:730:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&ngroup,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:742:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/group.cpp:746:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(names[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 31%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_group.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_group.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_group.cpp" [ 31%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_neigh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_time.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_time.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/imbalance_var.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_zero.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_zero.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/info.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/info.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/info.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp: In member function 'virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:320:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:329:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/improper_hybrid.cpp:332:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/input.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/irregular.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/irregular.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace_deprecated.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/kspace_deprecated.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/lammps.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/lattice.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/lattice.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/library.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/library.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/library.cpp" [ 32%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/math_extra.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/math_special.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/math_special.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/memory.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/min.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/min.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_cg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_cg.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_fire.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_fire.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_fire.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_hftn.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_linesearch.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_linesearch.cpp" [ 33%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/min_quickmin.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/nbin_standard.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/nbin_standard.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_list.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_list.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_list.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp: In member function 'int LAMMPS_NS::Modify::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1368:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1385:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1388:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(id_restart_global[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1391:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1394:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(style_restart_global[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1397:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1400:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(state_restart_global[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1410:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nfix_restart_peratom,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1427:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1430:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(id_restart_peratom[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1433:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1436:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(style_restart_peratom[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/modify.cpp:1439:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/neigh_request.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_copy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_bin.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_bin.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_bin_atomonly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_nsq_ghost.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_full_nsq_ghost.cpp" [ 34%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_bin_atomonly_newton.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_multi_newtoff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_multi_newtoff.cpp" [ 35%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_half_multi_newton.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_skip.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_skip.cpp" [ 36%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/npair_skip_respa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_improper_partial.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_improper_partial.cpp" [ 38%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ntopo_improper_template.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp: In member function 'virtual void LAMMPS_NS::PairBeck::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:282:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:286:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&AA[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:287:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&BB[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:288:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aa[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:289:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:290:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&beta[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:291:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp: In member function 'virtual void LAMMPS_NS::PairBeck::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_beck.cpp:322:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:334:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:338:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:339:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:340:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:341:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:342:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:343:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:374:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:375:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:376:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born.cpp:377:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:366:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:370:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:371:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:372:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:373:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:374:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:375:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:407:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:408:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:409:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:410:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_dsf.cpp:411:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:365:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:369:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:370:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:371:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:372:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:373:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:374:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:406:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:407:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:408:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:409:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_born_coul_wolf.cpp:410:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:312:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:316:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:317:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:318:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:349:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:350:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck.cpp:351:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:366:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:370:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:371:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:372:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:373:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:374:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:405:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:406:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:407:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:408:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_buck_coul_cut.cpp:409:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:249:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:252:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:276:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:277:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_cut.cpp:278:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDebye::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp:153:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp:154:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kappa,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp:155:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_debye.cpp:156:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_streitz.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDSF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp:257:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDSF::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp:282:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp:283:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_dsf.cpp:284:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_deprecated.cpp" [ 39%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:254:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:278:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:279:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:280:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_coul_wolf.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp: In member function 'virtual void LAMMPS_NS::PairDPD::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:319:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:323:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:324:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:325:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp: In member function 'virtual void LAMMPS_NS::PairDPD::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:353:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:354:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:355:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd.cpp:356:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid_overlay.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:234:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:238:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:239:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:267:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&t_start,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:268:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&t_stop,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:269:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:270:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_dpd_tstat.cpp:271:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp: In member function 'virtual void LAMMPS_NS::PairGauss::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:285:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:289:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:290:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:291:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp: In member function 'virtual void LAMMPS_NS::PairGauss::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:318:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:319:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_gauss.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp: In member function 'virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:668:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:685:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:688:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:694:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:698:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(special_lj[m],sizeof(double),4,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:701:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_hybrid.cpp:705:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(special_coul[m],sizeof(double),4,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:612:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:616:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:617:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:618:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:647:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:648:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:649:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj96_cut.cpp:650:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:283:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:287:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:288:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:289:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:290:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cubic.cpp:317:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:606:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:610:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:611:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:612:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:641:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:642:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:643:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut.cpp:644:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:357:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:361:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:362:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:363:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:364:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:397:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_cut.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDebye::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:174:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:175:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:176:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kappa,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:177:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_debye.cpp:178:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:380:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:384:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:385:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:386:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:416:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:418:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:419:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:420:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_dsf.cpp:421:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:375:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:379:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:380:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:381:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:412:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alf,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:413:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:414:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:415:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:416:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_cut_coul_wolf.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp" [ 40%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:328:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:332:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:333:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:334:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shift[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:335:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:364:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:365:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:366:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_expand.cpp:367:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:345:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:349:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:350:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:351:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:352:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:382:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:383:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:384:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs.cpp:385:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:383:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:387:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:388:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:418:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:419:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:420:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:421:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_gromacs_coul_gromacs.cpp:422:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:356:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:360:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:361:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:362:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:363:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:393:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:395:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:287:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:291:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:292:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:293:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_lj_smooth_linear.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:633:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:637:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:638:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:639:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gamR[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:640:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gamA[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:641:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:672:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:673:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:674:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_mie_cut.cpp:675:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:269:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:273:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:274:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:275:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:276:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:304:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:305:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_morse.cpp:306:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:250:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:254:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&prefactor[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:255:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:280:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_soft.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp: In member function 'void LAMMPS_NS::PairTable::read_table(LAMMPS_NS::PairTable::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:378:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:380:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:381:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:387:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:415:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp: In member function 'virtual void LAMMPS_NS::PairTable::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:977:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:978:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:979:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ewaldflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:980:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&pppmflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:981:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&msmflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:982:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dispersionflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_table.cpp:983:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tip4pflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zbl.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zbl.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:290:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:294:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:295:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:296:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:324:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:325:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_ufm.cpp:326:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp: In member function 'virtual void LAMMPS_NS::PairYukawa::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:256:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:260:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:261:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp: In member function 'virtual void LAMMPS_NS::PairYukawa::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:288:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kappa,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:289:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:290:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_yukawa.cpp:291:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/python.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_mars.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:176:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:180:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:205:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/pair_zero.cpp:206:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&coeffflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_park.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_park.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/random_park.cpp" [ 41%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/rcb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_data.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_data.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_dump.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::command(int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:304:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:308:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&procsperfile,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:311:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:315:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:321:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(buf,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:381:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:384:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&procsperfile,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:393:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:397:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:403:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(buf,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::file_layout()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:1091:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(all_written_send_sizes,sizeof(int),nprocs_file,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp: In member function 'char* LAMMPS_NS::ReadRestart::read_string()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:1273:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(value,sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::read_int_vec(int, int*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:1285:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(vec,sizeof(int),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::read_double_vec(int, double*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/read_restart.cpp:1296:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(vec,sizeof(double),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader_native.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader_native.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader_native.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reader_xyz.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_plane.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_plane.cpp" [ 42%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/region_prism.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/rerun.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/rerun.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/reset_ids.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/run.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/run.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/set.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/set.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/set.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/special.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/universe.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/universe.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/update.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp" [ 43%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/velocity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/velocity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/velocity.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::next(int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/variable.cpp:681:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",&nextindex); ~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/verlet.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/verlet.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/verlet.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_data.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_data.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_data.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_dump.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_dump.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_dump.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp: In member function 'void LAMMPS_NS::WriteCoeff::command(int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:115:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); // coeff ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:126:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:138:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:157:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); // gobble up one more empty line ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:158:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_coeff.cpp:168:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(str,256,one); ~~~~~^~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/write_restart.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/compute_erotate_asphere.cpp.o [ 44%] Building CXX 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nve_asphere_noforce.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nve_asphere_noforce.cpp" [ 44%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/fix_nve_line.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_line_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_line_lj.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_tri_lj.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_tri_lj.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:467:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setwell[i],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:470:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&well[i][0],sizeof(double),3,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:474:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:478:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:479:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:480:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:512:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gamma,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:513:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&upsilon,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:514:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:515:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:516:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_gayberne.cpp:517:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:445:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setwell[i],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:448:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&well[i][0],sizeof(double),3,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:452:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:456:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:457:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:458:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:486:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE/pair_resquared.cpp:487:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_nparticle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_nparticle.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_nparticle.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/body_rounded_polygon.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nph_body.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_nph_body.cpp" [ 45%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_npt_body.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_wall_body_polyhedron.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/fix_wall_body_polyhedron.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY/pair_body_nparticle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:376:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:377:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:378:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:379:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:381:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bb_k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:382:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:383:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:385:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:386:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:387:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/angle_class2.cpp:388:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp: In member function 'virtual void LAMMPS_NS::BondClass2::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:187:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:188:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:189:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/bond_class2.cpp:190:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp: In member function 'virtual void LAMMPS_NS::DihedralClass2::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:840:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:841:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:842:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:843:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&phi1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:844:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&phi2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:845:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&phi3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:847:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_f1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:848:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_f2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:849:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_f3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:850:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mbt_r0[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:852:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f1_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:853:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f2_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:854:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f3_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:855:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_r0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:857:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f1_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:858:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f2_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:859:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_f3_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:860:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ebt_r0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:862:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&at_f1_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:863:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&at_f2_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:864:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&at_f3_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:865:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&at_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:867:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&at_f1_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:868:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&at_f2_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:869:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&at_f3_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:870:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&at_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:872:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aat_k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:873:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:874:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:876:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:877:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_r10[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/dihedral_class2.cpp:878:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bb13t_r30[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp: In member function 'virtual void LAMMPS_NS::ImproperClass2::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:609:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:610:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&chi0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:612:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aa_k1[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:613:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aa_k2[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:614:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aa_k3[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:615:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_1[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:616:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_2[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/improper_class2.cpp:617:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aa_theta0_3[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:310:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:314:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:315:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:316:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:345:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:346:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:347:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp" [ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/fix_wall_colloid.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:364:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:368:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:369:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:370:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:371:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:401:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:402:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:403:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:404:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_cut.cpp:405:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:406:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:410:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:411:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:412:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:443:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:444:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:445:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:446:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:447:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:448:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2/pair_lj_class2_coul_long.cpp:449:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian_poly.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian_poly.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:610:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:614:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:615:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:650:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:651:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flaglog,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:652:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagfld,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:653:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:654:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:655:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&t_target, sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:656:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seed, sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:657:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:658:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:659:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagHI,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_brownian.cpp:660:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:401:31: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (comm->me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:405:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a12[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:406:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:407:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:408:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:409:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:439:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:440:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_colloid.cpp:441:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp: In member function 'virtual void LAMMPS_NS::PairLubricate::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:690:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:694:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:695:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp: In member function 'virtual void LAMMPS_NS::PairLubricate::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:728:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:729:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flaglog,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:730:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagfld,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:731:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:732:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:733:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:734:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:735:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagHI,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate.cpp:736:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU_poly.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp: In member function 'virtual void LAMMPS_NS::PairLubricateU::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1917:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1921:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1922:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp: In member function 'virtual void LAMMPS_NS::PairLubricateU::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1954:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1955:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flaglog,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1956:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1957:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1958:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1959:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1960:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagHI,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricateU.cpp:1961:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&flagVF,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate_poly.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate_poly.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_lubricate_poly.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID/pair_yukawa_colloid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS/dump_xyz_gz.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS/dump_xyz_gz.cpp" [ 47%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/atom_vec_dipole.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:441:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:445:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:446:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:447:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:448:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:477:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:478:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:479:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:480:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:499:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:500:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:501:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:529:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:530:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:531:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_cut_dipole_long.cpp:532:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:351:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:355:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:356:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:357:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:386:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:387:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:388:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:389:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE/pair_lj_long_dipole_long.cpp:390:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/fix_freeze.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hertz_history.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hertz_history.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald_disp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald_disp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/ewald_disp.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp: In member function 'virtual void LAMMPS_NS::PairGranHookeHistory::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:542:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp: In member function 'virtual void LAMMPS_NS::PairGranHookeHistory::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:568:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kn,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:569:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kt,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:570:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gamman,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:571:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gammat,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:572:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&xmu,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR/pair_gran_hooke_history.cpp:573:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dampflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fft3d.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/gridcomm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/gridcomm.cpp" [ 48%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm_cg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm_cg.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/msm_cg.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'virtual void LAMMPS_NS::FixTuneKspace::init()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:103:23: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(old_acc_str,"%g",old_acc); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'void LAMMPS_NS::FixTuneKspace::store_old_kspace_settings()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:214:23: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(old_acc_str,"%g",old_acc); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 14 bytes into a destination of size 12 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp: In member function 'virtual void LAMMPS_NS::FixTuneKspace::pre_exchange()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:158:28: warning: '/long' directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/long",base_pair_style); ^~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 25 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:163:30: warning: '/msm' directive writing 4 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/msm",base_pair_style); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 24 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:148:28: warning: '/msm' directive writing 4 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/msm",base_pair_style); ^~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 5 and 24 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:141:28: warning: '/long' directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/long",base_pair_style); ^~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 25 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:134:28: warning: '/long' directive writing 5 bytes into a region of size between 1 and 20 [-Wformat-overflow=] sprintf(new_pair_style,"%s/long",base_pair_style); ^~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/fix_tune_kspace.cpp:20: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 6 and 25 bytes into a destination of size 20 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:427:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:431:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:432:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:433:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:434:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:435:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:436:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:470:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:471:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:472:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:473:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:474:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:475:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_born_coul_long.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_msm.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:404:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:408:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:409:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:410:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:411:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:443:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:444:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:445:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:446:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:447:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:448:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_coul_long.cpp:449:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_msm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_msm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:360:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:364:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&buck_a_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:365:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&buck_rho_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:366:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&buck_c_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:367:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_buck_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:399:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_buck_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:400:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:401:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:402:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:403:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:404:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_buck_long_coul_long.cpp:405:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:297:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:300:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&scale[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:326:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:328:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:329:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_coul_long.cpp:330:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:830:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:834:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:835:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:836:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:837:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:869:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:870:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:871:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:872:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:873:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:874:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmm_coul_long.cpp:875:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:900:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:904:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:905:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:906:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:907:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:939:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:940:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:941:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:942:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:943:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:944:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:945:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_msm.cpp" [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:800:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:804:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:805:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:806:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:837:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:838:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:839:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:840:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:841:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:842:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_coul_long.cpp:843:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:537:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:538:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:539:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:540:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:541:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:543:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:544:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:545:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:546:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:547:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:548:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_cut_tip4p_long.cpp:549:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:360:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:364:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:365:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:366:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_read[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:397:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:399:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:400:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:401:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:402:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_coul_long.cpp:403:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ewald_order,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:477:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:478:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:479:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_tip4p_long.cpp:480:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1549:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1550:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1551:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1552:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1553:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1555:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1556:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1557:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1558:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1559:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pair_lj_long_tip4p_long.cpp:1560:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_cg.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_disp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_stagger.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_stagger.cpp" [ 50%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE/pppm_tip4p.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo_morse.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp: In member function 'void LAMMPS_NS::PairADP::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:564:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:565:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:566:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:567:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:592:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:616:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp: In member function 'void LAMMPS_NS::PairADP::grab(FILE*, int, double*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_adp.cpp:928:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3385:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3391:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3393:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3395:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3397:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3399:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3401:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3403:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3405:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3407:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3409:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3411:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3413:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3415:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3417:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3419:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3421:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3423:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3425:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3427:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3429:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3431:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3433:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3435:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3437:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3439:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3441:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3443:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3445:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3447:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3449:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3451:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3453:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3455:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3457:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3459:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3461:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3463:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3465:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3467:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3469:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3471:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3473:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3475:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3477:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3482:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3484:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3486:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3488:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3490:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3492:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3494:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3496:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3498:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3500:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3502:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3504:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3506:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3508:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3510:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3512:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3514:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3516:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3518:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3520:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3522:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3527:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3529:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3531:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3533:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3535:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3537:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3539:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3541:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3543:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3550:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3551:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3552:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3556:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3560:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3563:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3566:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3570:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3573:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3580:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3581:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3582:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3584:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3588:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3592:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3596:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3603:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3604:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3605:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3607:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3612:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3616:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3621:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3629:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3630:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3631:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3632:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3637:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3641:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3646:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3654:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3655:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3656:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3658:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3663:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3667:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3673:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3682:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3683:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3684:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3686:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3691:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3695:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3701:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3710:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3711:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3712:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3714:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3719:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3723:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3729:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3738:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3739:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3740:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3742:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3747:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3751:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_airebo.cpp:3757:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:313:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:316:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nu[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:341:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_atm.cpp:342:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_triple,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp: In member function 'void LAMMPS_NS::PairBOP::read_table(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:4982:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); // skip first comment line ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:4983:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:4988:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5017:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5085:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); // skip first comment line ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5087:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5089:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5093:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5098:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5102:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5104:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5106:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5115:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5122:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5126:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5130:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5132:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5136:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5138:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5142:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5144:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5148:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5150:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5154:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5156:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5160:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5162:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5164:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5173:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5180:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5188:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5196:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5204:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5211:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5215:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_bop.cpp:5232:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::read_lib()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:326:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:327:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:338:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:350:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:358:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:366:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:375:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:384:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:391:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:404:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:422:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:431:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:446:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:464:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:473:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:488:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:506:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_comb3.cpp:515:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLIB,fp); ~~~~~^~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_cd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_cd.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp: In member function 'virtual void LAMMPS_NS::PairEAM::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:470:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:471:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:473:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp: In member function 'void LAMMPS_NS::PairEAM::grab(FILE*, int, double*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam.cpp:788:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloy::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:141:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:142:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:143:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:168:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_alloy.cpp:192:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFS::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:141:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:142:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:143:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:168:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eam_fs.cpp:194:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_gw_zbl.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp: In member function 'int LAMMPS_NS::PairEIM::grabpair(FILE*, int, int)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp:971:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_eim.cpp:975:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_nb3b_harmonic.cpp" [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp: In member function 'void LAMMPS_NS::PairLCBOP::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:988:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:994:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_1); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:995:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_2); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:996:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&gamma_1); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:997:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&A); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:998:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&B_1); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:999:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&B_2); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1000:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&alpha); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1001:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&beta_1); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1002:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&beta_2); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1003:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&d); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1004:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_1); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1005:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_4); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1006:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&C_6); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1007:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&L); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1008:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&kappa); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1009:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&R_0); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1010:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&R_1); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1011:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_0); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1012:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_1_LR); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1013:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&r_2_LR); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1014:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&v_1); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1015:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&v_2); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1016:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps_1); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1017:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps_2); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1018:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&lambda_1); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1019:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&lambda_2); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1020:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&eps); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1021:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); sscanf(s,"%lg",&delta); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1024:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1033:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1040:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] while (1) { fgets(s,MAXLINE,fp); if (s[0] != '#') break; } ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1047:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_lcbop.cpp:1053:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(s,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_rebo.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_rebo.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_rebo.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp: In member function 'virtual void LAMMPS_NS::PairPolymorphic::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:580:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:581:43: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] while (line == strchr(line,'#')) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:597:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:615:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:651:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp: In member function 'void LAMMPS_NS::PairPolymorphic::grab(FILE*, int, double*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_polymorphic.cpp:882:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY/pair_sw.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_bond_create.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_bond_create.cpp" [ 52%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/fix_bond_swap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM/pair_meam.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM/pair_meam.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_msd_nongauss.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_msd_nongauss.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_msd_nongauss.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp: In member function 'virtual void LAMMPS_NS::PairDSMC::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:350:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:354:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:355:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp: In member function 'virtual void LAMMPS_NS::PairDSMC::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:383:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:384:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&max_cell_size,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:385:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:386:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC/pair_dsmc.cpp:387:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/compute_ti.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/dump_xtc.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/dump_xtc.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_deposit.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_gld.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_gld.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_oneway.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_thermal_conductivity.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_thermal_conductivity.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_ttm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_ttm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_ttm.cpp" [ 53%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/fix_viscosity.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:323:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:327:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&e0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:328:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:329:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nn[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:330:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:331:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:361:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:362:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:363:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut.cpp:364:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:374:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:378:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&e0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:379:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:380:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nn[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:381:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:382:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:383:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:415:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:416:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:418:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_cut.cpp:419:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/xdr_compat.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:421:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:425:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&e0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:426:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:427:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nn[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:428:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:429:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:462:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:463:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:464:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:465:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:466:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:467:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC/pair_nm_cut_coul_long.cpp:468:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_delta.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_delta.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_delta.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp: In member function 'virtual void LAMMPS_NS::AngleCharmm::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp:249:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp:250:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp:251:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k_ub[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_charmm.cpp:252:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r_ub[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp: In member function 'virtual void LAMMPS_NS::AngleCosine::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine.cpp:197:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (comm->me == 0) fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp: In member function 'virtual void LAMMPS_NS::AngleCosinePeriodic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:250:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:251:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_periodic.cpp:252:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineSquared::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp:219:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_cosine_squared.cpp:220:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp: In member function 'virtual void LAMMPS_NS::AngleHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp:219:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_harmonic.cpp:220:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_angle.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_bond.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp: In member function 'virtual void LAMMPS_NS::AngleTable::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:292:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_full.cpp.o /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:293:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_full.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_full.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp: In member function 'void LAMMPS_NS::AngleTable::read_table(LAMMPS_NS::AngleTable::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:385:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:387:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:388:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:394:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:403:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/angle_table.cpp:405:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_molecular.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_molecular.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_molecular.cpp" [ 54%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_template.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_template.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/atom_vec_template.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp: In member function 'virtual void LAMMPS_NS::BondFENE::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp:220:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp:221:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp:222:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene.cpp:223:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp" [ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp: In member function 'virtual void LAMMPS_NS::BondFENEExpand::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:229:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:230:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:231:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:232:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_fene_expand.cpp:233:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp: In member function 'virtual void LAMMPS_NS::BondGromos::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp:172:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_gromos.cpp:173:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp:172:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_harmonic.cpp:173:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp.o 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp: In member function 'virtual void LAMMPS_NS::BondMorse::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp:176:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp:177:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_morse.cpp:178:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp: In member function 'virtual void LAMMPS_NS::BondNonlinear::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp:171:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp:172:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_nonlinear.cpp:173:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&lamda[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp: In member function 'virtual void LAMMPS_NS::BondQuartic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:282:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:283:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b2[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:284:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rc[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_quartic.cpp:285:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&u0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp: In member function 'virtual void LAMMPS_NS::BondTable::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:236:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:237:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp: In member function 'void LAMMPS_NS::BondTable::read_table(LAMMPS_NS::BondTable::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:314:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:316:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:317:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:323:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/bond_table.cpp:335:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmm::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:429:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:430:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:431:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:432:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmm.cpp:433:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&weightflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmmfsw::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:472:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:473:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:474:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:475:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_charmmfsw.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&weightflag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:334:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sign[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_harmonic.cpp:335:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/fix_cmap.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/fix_cmap.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/fix_cmap.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp: In member function 'virtual void LAMMPS_NS::DihedralHelix::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:325:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:326:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_helix.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cphi[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralMultiHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:322:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:323:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a4[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_multi_harmonic.cpp:324:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a5[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp" [ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp: In member function 'virtual void LAMMPS_NS::DihedralOPLS::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp:335:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/dihedral_opls.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp: In member function 'virtual void LAMMPS_NS::ImproperCvff::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp:339:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp:340:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sign[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_cvff.cpp:341:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp:280:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_harmonic.cpp:281:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp: In member function 'virtual void LAMMPS_NS::ImproperUmbrella::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp:322:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&w0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/improper_umbrella.cpp:323:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&C[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:379:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:383:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:384:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:385:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:386:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:440:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:441:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:442:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:443:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:444:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:445:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp" [ 56%] Building CXX object 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-I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/atom_vec_peri.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/atom_vec_peri.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:437:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:441:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:442:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:443:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:444:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:474:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:475:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:476:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:477:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:478:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:621:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:625:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:626:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:627:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:663:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:664:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:665:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:666:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:667:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:669:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:670:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:671:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:672:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:673:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:480:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:507:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:508:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:509:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:510:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:511:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE/pair_tip4p_cut.cpp:513:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/compute_damage_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriEPS::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:570:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:574:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:575:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:576:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:577:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:578:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_eps.cpp:579:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&m_yieldstress[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriLPS::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:499:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:500:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:501:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:502:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_lps.cpp:503:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp: In member function 'virtual void LAMMPS_NS::PairPeriPMB::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:424:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:428:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kspring[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:429:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:430:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_pmb.cpp:431:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/compute_event_displace.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_hyper.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_hyper.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp: In member function 'virtual void LAMMPS_NS::PairPeriVES::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:552:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:556:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bulkmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:557:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shearmodulus[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:558:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&s00[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:559:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:560:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:561:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&m_lambdai[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI/pair_peri_ves.cpp:562:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&m_taubi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_prd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_prd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_prd.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_event_tad.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_hyper_global.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_hyper_global.cpp" [ 57%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_hyper_local.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/fix_neb.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/hyper.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/prd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/prd.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/tad.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/tad.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA/temper.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_erotate_rigid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_erotate_rigid.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/compute_ke_rigid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rattle.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rattle.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid.cpp" [ 58%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_nh.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_npt.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_npt.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_npt_small.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_shake.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_append_atoms.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_append_atoms.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_append_atoms.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_msst.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_msst.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_msst.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_nphug.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_nphug.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_nphug.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_small.cpp: In member function 'virtual void LAMMPS_NS::FixRigidSmall::write_restart_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_small.cpp:2604:24: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size 93 [-Wformat-truncation=] snprintf(str,128,"Cannot open fix rigid restart file %s",outfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID/fix_rigid_small.cpp:15: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 36 and 163 bytes into a destination of size 128 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 59%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_wall_piston.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_wall_piston.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK/fix_wall_piston.cpp" [ 59%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP/compute_sna_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP/pair_snap.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP/pair_snap.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP/sna.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/dump_custom_mpiio.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/dump_custom_mpiio.cpp" [ 60%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/dump_xyz_mpiio.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO/restart_mpiio.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI/compute_voronoi_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS/fix_poems.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS/fix_poems.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC/fix_atc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC/fix_atc.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC/fix_atc.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/atom_vec_wavepacket.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/fix_bocs.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS/fix_bocs.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function 'virtual void LAMMPS_NS::PairAWPMDCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:604:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:607:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp: In member function 'virtual void LAMMPS_NS::PairAWPMDCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:631:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:632:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:633:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna2_fene.cpp" [ 61%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp" In file included from /usr/include/c++/8/vector:69, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:35: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Vector_Nt&}; _Tp = Vector_Nt; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd.h:145, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD/pair_awpmd_cut.cpp:35: /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void LAMMPS_NS::PairAWPMDCut::compute(int, int)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/fix_nve_dot.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp: In member function 'virtual void LAMMPS_NS::BondOxdnaFene::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:296:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:297:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&Delta[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/bond_oxdna_fene.cpp:298:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_excv.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:833:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:838:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k_cxst[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:839:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:840:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:841:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:842:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:843:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:844:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:845:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:846:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:848:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:849:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:850:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:851:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:852:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:854:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:855:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:856:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:857:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:858:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:860:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:861:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst5_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:862:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:863:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:864:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:866:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:867:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst6_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:868:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:869:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:870:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:872:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&AA_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:873:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&BB_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:937:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:938:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:939:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:458:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:463:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kappa_dh[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:464:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&qeff_dh_pf[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:465:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_dh[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:466:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_dh_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:467:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_dh_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:500:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:501:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_dh.cpp:502:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna2_stk.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:992:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:997:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k_cxst[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:998:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:999:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1000:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1001:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1002:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1003:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_cxst_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1004:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1005:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1007:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1008:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1009:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1010:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1011:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1013:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1014:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1015:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1016:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1017:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1019:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1020:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst5_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1021:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1022:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1023:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1025:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1026:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_cxst6_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1027:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1028:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1029:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1031:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst3p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1032:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst3p_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1033:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst3p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1034:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst3p_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1035:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_cxst4p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1036:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst4p_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1037:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_cxst4p[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1038:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_cxst4p_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1108:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1109:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1110:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:718:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:723:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_ss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:724:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_ss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:725:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_ss_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:726:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_ss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:727:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_ss_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:728:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_sb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:729:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_sb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:730:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_sb_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:731:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_sb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:732:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_sb_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:733:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_bb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:734:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma_bb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:735:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_bb_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:736:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_bb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:737:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_bb_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:780:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:781:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_excv.cpp:782:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:979:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:984:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_hb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:985:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:986:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:987:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:988:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:989:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:990:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:991:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_hb_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:992:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:993:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:994:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shift_hb[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:996:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:997:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:998:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:999:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1000:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1002:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1003:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb2_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1004:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb2_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1005:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1006:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb2_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1008:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1009:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb3_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1010:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb3_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1011:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1012:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb3_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1014:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1015:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1016:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1017:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1018:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1020:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1021:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb7_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1022:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb7_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1023:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1024:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb7_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1026:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_hb8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1027:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_hb8_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1028:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb8_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1029:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_hb8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1030:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_hb8_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1105:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1106:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_hbond.cpp:1107:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:996:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1001:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon_st[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1002:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_st[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1003:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1004:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1005:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1006:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1007:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1008:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_st_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1009:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_st_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1010:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_st_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1011:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shift_st[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1013:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_st4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1014:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_st4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1015:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1016:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_st4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1017:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1019:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_st5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1020:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_st5_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1021:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st5_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1022:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_st5[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1023:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st5_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1025:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_st6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1026:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_st6_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1027:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st6_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1028:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_st6[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1029:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_st6_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1031:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_st1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1032:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1033:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_st1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1034:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1035:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_st2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1036:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st2_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1037:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_st2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1038:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cosphi_st2_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1104:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1105:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_stk.cpp:1106:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:951:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:956:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k_xst[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:957:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:958:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:959:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:960:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:961:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_lc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:962:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_xst_hc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:963:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst_lo[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:964:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst_hi[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:966:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:967:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst1_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:968:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst1_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:969:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:970:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst1_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:972:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:973:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst2_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:974:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst2_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:975:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:976:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst2_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:978:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:979:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst3_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:980:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst3_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:981:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:982:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst3_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:984:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:985:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst4_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:986:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst4_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:987:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:988:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst4_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:990:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:991:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst7_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:992:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst7_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:993:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst7[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:994:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst7_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:996:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a_xst8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:997:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta_xst8_0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:998:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst8_ast[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:999:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&b_xst8[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1000:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dtheta_xst8_c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1073:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1074:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA/pair_oxdna_xstk.cpp:1075:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_edpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_edpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_edpd.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_mdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_mdpd.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/atom_vec_tdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/compute_tdpd_cc_atom.cpp" [ 62%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_edpd_source.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_tdpd_source.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/fix_tdpd_source.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd_rhosum.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:458:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:462:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:463:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:464:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&power[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:465:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:466:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kappa[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:467:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&powerT[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:468:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cutT[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:471:18: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sc[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:475:18: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kc[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:513:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:514:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_edpd.cpp:515:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:353:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:357:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&A_att[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:358:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&B_rep[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:359:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:360:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:361:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_r[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:391:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:392:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:393:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_mdpd.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp: In member function 'virtual void LAMMPS_NS::PairTDPD::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:401:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:405:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:406:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gamma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:407:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&power[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:408:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:409:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cutcc[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:411:18: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kappa[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:412:18: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:413:18: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&powercc[i][j][k],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp: In member function 'virtual void LAMMPS_NS::PairTDPD::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:449:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:450:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:451:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO/pair_tdpd.cpp:452:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp: In member function 'virtual void LAMMPS_NS::AngleSDK::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/angle_sdk.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&repscale[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:385:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:389:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&lj_type[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:390:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:391:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:392:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:422:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:423:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:424:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk.cpp:425:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:476:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:480:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&lj_type[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:481:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:482:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:483:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:515:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:516:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:517:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:518:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:519:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:520:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:521:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_saed.cpp" [ 63%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/compute_xrd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function 'void LAMMPS_NS::FixSAEDVTK::invoke_vector(LAMMPS_NS::bigint)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:434:26: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size 98 [-Wformat-truncation=] snprintf(str,128,"Cannot open fix saed/vtk file %s",nName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:22: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 31 and 158 bytes into a destination of size 128 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/compute_dpd_atom.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function 'void LAMMPS_NS::FixSAEDVTK::options(int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:561:28: warning: '%s' directive output may be truncated writing up to 127 bytes into a region of size 98 [-Wformat-truncation=] snprintf(str,128,"Cannot open fix saed/vtk file %s",nName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.h:23, from /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION/fix_saed_vtk.cpp:22: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 31 and 158 bytes into a destination of size 128 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_dpd_energy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_rx.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_rx.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_rx.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_shardlow.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_shardlow.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_shardlow.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp: In member function 'void LAMMPS_NS::FixEOStable::read_table(LAMMPS_NS::FixEOStable::Table*, LAMMPS_NS::FixEOStable::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:216:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:218:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:219:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:225:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:235:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table.cpp:237:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp: In member function 'void LAMMPS_NS::FixEOStableRX::read_table(LAMMPS_NS::FixEOStableRX::Table*, LAMMPS_NS::FixEOStableRX::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:435:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:437:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:438:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:444:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:472:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/fix_eos_table_rx.cpp:474:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/nbin_ssa.cpp" [ 64%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:382:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:386:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:387:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:388:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:417:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&temperature,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:418:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:419:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt.cpp:420:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:483:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:487:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:488:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:489:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kappa[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:490:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:520:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:521:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_dpd_fdt_energy.cpp:522:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:974:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:978:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1004:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1005:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1006:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_exp6_rx.cpp:1007:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function 'void LAMMPS_NS::PairMultiLucy::read_table(LAMMPS_NS::PairMultiLucy::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:366:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:368:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:369:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:375:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:388:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:390:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucy::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:709:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy.cpp:710:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_table_rx.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_table_rx.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_table_rx.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'void LAMMPS_NS::PairMultiLucyRX::read_table(LAMMPS_NS::PairMultiLucyRX::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:511:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:513:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:514:47: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:520:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:533:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:535:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucyRX::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:854:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD/pair_multi_lucy_rx.cpp:855:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/compute_temp_drude.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_drude_transform.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/fix_langevin_drude.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:495:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:499:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:500:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:501:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&polar[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:502:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&thole[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:504:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:540:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:541:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:542:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&thole_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:543:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:544:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:545:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:546:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:547:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:548:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/atom_vec_electron.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_eff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_ke_eff.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:316:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&polar[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&thole[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:322:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:352:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&thole_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:353:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:354:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE/pair_thole.cpp:355:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_deform_eff.cpp" [ 65%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/compute_temp_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_npt_eff.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_npt_eff.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/fix_nve_eff.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/compute_fep.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp: In member function 'virtual void LAMMPS_NS::PairEffCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:970:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:973:27: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp: In member function 'virtual void LAMMPS_NS::PairEffCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:997:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:998:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF/pair_eff_cut.cpp:999:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCutSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:277:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:281:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:282:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCutSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:311:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:312:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:314:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:315:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_cut_soft.cpp:316:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp" [ 66%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:301:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:305:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:335:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_coul_long_soft.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:843:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:847:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:848:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:849:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:850:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&eps14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:851:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma14[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:886:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:887:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:888:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:890:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_inner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:891:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:892:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:893:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:894:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:381:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:385:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:386:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:387:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:388:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:389:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:424:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:425:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:426:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:428:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:429:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:430:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:431:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:432:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:799:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:803:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:804:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:805:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:806:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:840:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:841:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:842:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alphac,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:844:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:845:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:846:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:847:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:848:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:657:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:661:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:662:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:663:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:664:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:697:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nlambda,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:698:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alphalj,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:700:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:701:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:702:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_soft.cpp:703:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:525:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:526:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:527:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:528:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:529:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:531:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:532:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:533:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:534:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:535:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD/dump_h5md.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSoft::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:317:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:322:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:323:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:324:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&lambda[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_morse_soft.cpp:325:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_fluid.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLongSoft::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:462:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeO,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:463:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeH,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:464:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeB,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:465:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&typeA,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP/pair_tip4p_long_soft.cpp:466:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&qdist,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_momentum.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_momentum.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_momentum.cpp" [ 67%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB/fix_lb_pc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD/manifold_torus.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD/manifold_torus.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD/manifold_torus.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp: In member function 'virtual void LAMMPS_NS::user_manifold::manifold_thylakoid::checkup()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD/manifold_thylakoid.cpp:62:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] fprintf(screen,"I have %ld parts. They are:\n", parts.size()); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_final.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_final.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_final.cpp" [ 68%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_dens_init.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_force.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_force.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_funcs.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_setup_param.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/meam_setup_param.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/pair_meamc.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/pair_meamc.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC/pair_meamc.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_linalg.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_linalg.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_linalg.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_splinetab.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp: In member function 'void potdata::readpot(const char*, const char*, double)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:187:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:203:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:246:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:306:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:329:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:331:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:334:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:343:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:345:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:358:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp: In function 'void getparmindata(const char*, int*, double*, double*, double*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:109:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:119:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/mgpt_readpot.cpp:123:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,sizeof(line),in); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/pair_mgpt.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/pair_mgpt.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT/pair_mgpt.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" 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"CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp" [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShift::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:228:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:229:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kcost[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:230:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ksint[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift.cpp:231:13: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShiftExp::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:260:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&umin[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:261:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:262:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cost[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:263:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sint[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_cosine_shift_exp.cpp:264:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp: In member function 'virtual void LAMMPS_NS::AngleDipole::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp:209:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_dipole.cpp:210:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gamma0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp: In member function 'virtual void LAMMPS_NS::AngleFourier::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:235:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:236:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&C0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:237:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&C1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier.cpp:238:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&C2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp: In member function 'virtual void LAMMPS_NS::AngleFourierSimple::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:241:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:242:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&C[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_fourier_simple.cpp:243:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&N[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp: In member function 'virtual void LAMMPS_NS::AngleQuartic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp:236:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp:237:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp:238:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/angle_quartic.cpp:239:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShift::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:181:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:182:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift.cpp:183:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_ackland_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_ackland_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_ackland_atom.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_basal_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_basal_atom.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShiftCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:183:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:184:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/bond_harmonic_shift_cut.cpp:185:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r1[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_cnp_atom.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_entropy_atom.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_cylinder.cpp" [ 70%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/compute_pressure_grem.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::DihedralCosineShiftExp::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:324:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&umin[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:325:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:326:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cost[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sint[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_cosine_shift_exp.cpp:328:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp: In member function 'virtual void LAMMPS_NS::DihedralFourier::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp:371:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp:386:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(k[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp:387:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(multiplicity[i],sizeof(int),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_fourier.cpp:388:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralNHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:322:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_nharmonic.cpp:332:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(a[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp: In member function 'virtual void LAMMPS_NS::DihedralQuadratic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:327:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_quadratic.cpp:328:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&phi0[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_addtorque.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp: In member function 'virtual void LAMMPS_NS::DihedralSpherical::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:759:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:779:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(Ccoeff[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:780:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(phi_mult[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:781:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(phi_shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:782:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(phi_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:783:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(theta1_mult[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:784:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(theta1_shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:785:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(theta1_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:786:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(theta2_mult[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:787:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(theta2_shift[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_spherical.cpp:788:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(theta2_offset[i],sizeof(double),nterms[i],fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp: In member function 'virtual void LAMMPS_NS::DihedralTable::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1026:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1027:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp: In member function 'void LAMMPS_NS::DihedralTable::read_table(LAMMPS_NS::DihedralTable::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1094:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1096:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1098:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table.cpp:1104:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp: In member function 'virtual void LAMMPS_NS::DihedralTableCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1064:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabstyle,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1065:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tablength,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1066:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1067:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1068:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1069:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&phi1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1070:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&phi2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1071:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&phi3[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1073:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aat_k[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1074:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1075:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aat_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp: In member function 'void LAMMPS_NS::DihedralTableCut::read_table(LAMMPS_NS::DihedralTableCut::Table*, char*, char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1154:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // no match, skip section ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1156:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1158:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/dihedral_table_cut.cpp:1164:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_bond_react.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_bond_react.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelateLong::end_of_step()': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ave_correlate_long.cpp:506:33: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] if (fileend > 0) ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ffl.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_grem.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_grem.cpp" [ 71%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_imd.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_ees.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_ees.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_ees.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp: In constructor 'LAMMPS_NS::FixTTMMod::FixTTMMod(LAMMPS_NS::LAMMPS*, int, char**)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:123:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:124:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:128:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:129:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:133:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:134:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:138:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:139:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:143:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:144:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:148:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:149:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:153:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:154:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:158:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:159:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:163:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:164:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:168:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:169:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:173:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:174:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:178:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:179:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:183:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:184:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:188:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:189:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:193:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:194:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:198:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:199:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:203:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:204:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:208:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:209:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:213:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:214:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:218:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:219:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:223:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:224:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:228:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_ttm_mod.cpp:229:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(linee,MAXLINE,fpr_2); ~~~~~^~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/fix_wall_region_ees.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp: In member function 'virtual void LAMMPS_NS::ImproperCossq::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp:307:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_cossq.cpp:308:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp" [ 72%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp: In member function 'virtual void LAMMPS_NS::ImproperDistance::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp:253:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_distance.cpp:254:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_agni.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp: In member function 'virtual void LAMMPS_NS::ImproperFourier::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&C0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:334:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&C1[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:335:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&C2[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_fourier.cpp:336:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&all[1],sizeof(int),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp: In member function 'virtual void LAMMPS_NS::ImproperRing::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/improper_ring.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&chi[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairBuckMDF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:345:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:349:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:350:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rho[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:351:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:352:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairBuckMDF::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:381:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:382:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:383:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_buck_mdf.cpp:384:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:288:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rme[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:289:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigmae[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:290:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:317:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:318:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_diel.cpp:319:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp: In member function 'virtual void LAMMPS_NS::PairCoulShield::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:305:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigmae[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:306:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp: In member function 'virtual void LAMMPS_NS::PairCoulShield::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:332:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:333:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_coul_shield.cpp:334:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_edip_multi.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_extep.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_extep.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_extep.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp: In member function 'virtual void LAMMPS_NS::PairGaussCut::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:309:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:313:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&hgauss[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:314:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rmh[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:315:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigmah[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:316:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp: In member function 'virtual void LAMMPS_NS::PairGaussCut::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:345:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:346:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_gauss_cut.cpp:347:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_ilp_graphene_hbn.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp" [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_list.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:314:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:318:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&aparm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bparm[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lennard_mdf.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat 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-DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:835:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:839:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:840:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:841:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&shift[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:842:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:874:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:875:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:876:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:877:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:878:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:879:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ncoultablebits,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_expand_coul_long.cpp:880:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tabinner,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:314:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:318:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_inner[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_mdf.cpp:348:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:490:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:494:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&epsilon[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:495:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sigma[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:496:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:497:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:498:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&scale[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:527:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:528:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:529:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSpline::read_file(const char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:449:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:455:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:485:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*, bool)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:649:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:652:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:658:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:665:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_spline.cpp:669:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::read_file(const char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:475:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:607:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:613:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:619:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_meam_sw_spline.cpp:623:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:278:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:282:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:283:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:284:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:285:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:312:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_morse_smooth_linear.cpp:313:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp: In member function 'virtual void LAMMPS_NS::PairMomb::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:312:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:316:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&d0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:317:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:318:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:319:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&c[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:320:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&rr[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:321:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp: In member function 'virtual void LAMMPS_NS::PairMomb::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:353:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:354:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&sscale,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:355:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&dscale,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:356:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_momb.cpp:357:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp: In member function 'virtual void LAMMPS_NS::PairSRP::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:703:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:708:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&a0[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:709:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp: In member function 'virtual void LAMMPS_NS::PairSRP::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:737:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:738:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bptype,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:739:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&btype,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:740:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&min,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:741:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&midpoint,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_srp.cpp:742:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&exclude,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/pair_tersoff_table.cpp" [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC/temper_grem.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2P6::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:389:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&theta0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:390:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:391:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k3[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:392:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k4[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:393:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k5[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:394:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k6[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:396:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bb_k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:397:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:398:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:400:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:401:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:402:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_class2_p6.cpp:403:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineBuck6d::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:337:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:338:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/angle_cosine_buck6d.cpp:339:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&th0[1],sizeof(double),atom->nangletypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperInversionHarmonic::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:320:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kw[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/improper_inversion_harmonic.cpp:321:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&w0[1],sizeof(double),atom->nimpropertypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/dump_molfile.cpp.o [ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" 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-DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/molfile_interface.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:420:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:424:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:425:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:426:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:427:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:428:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha_ij[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:429:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:462:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&vdwl_smooth,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:463:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:464:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:465:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:466:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:467:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:453:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:457:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d1[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:458:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d2[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:459:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d3[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:460:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&buck6d4[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:461:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&alpha_ij[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:462:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj[i][j],sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart_settings(FILE*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:496:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&vdwl_smooth,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:497:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&coul_smooth,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:498:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_lj_global,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:499:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cut_coul,sizeof(double),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:500:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&offset_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:501:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:502:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tail_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE/reader_molfile.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF/dump_netcdf.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/atom_vec_smd.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/atom_vec_smd.cpp" [ 75%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/compute_smd_contact_radius.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/pair_smd_tlsph.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/pair_smd_tlsph.cpp" [ 77%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD/pair_smd_triangulated_surface.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'virtual void LAMMPS_NS::PairSMTBQ::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:420:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:423:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:476:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr); ~~~~~^~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:480:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:488:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:497:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:515:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:529:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:552:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr); ~~~~~^~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:555:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:608:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:620:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:642:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:655:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:662:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:682:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(ptr,MAXLINE,fp); ~~~~~^~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:685:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:695:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:706:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:709:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:714:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:722:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:725:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:732:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:735:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:745:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:748:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:753:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:779:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:782:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:790:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ/pair_smtbq.cpp:800:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets( ptr, MAXLINE, fp); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 77%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/atom_vec_meso.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_heatconduction.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_idealgas.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_taitwater_morris.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH/pair_sph_taitwater_morris.cpp" [ 78%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY/compute_force_tally.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_nh_uef.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_nh_uef.cpp" [ 79%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF/fix_npt_uef.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ/fix_qeq_dynamic.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ/fix_qeq_dynamic.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ/fix_qeq_fire.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/thr_data.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/thr_data.cpp" [ 80%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/thr_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/domain_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/domain_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_class2_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_sdk_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_sdk_omp.cpp" [ 81%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/angle_cosine_shift_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_fene_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_fene_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_fene_expand_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_quartic_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_quartic_omp.cpp" [ 82%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/bond_table_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_neigh_history_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_neigh_history_omp.cpp" [ 83%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_nph_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/fix_rigid_npt_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/respa_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/respa_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/ewald_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/ewald_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/ewald_omp.cpp" [ 85%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/msm_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_disp_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_disp_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pppm_tip4p_omp.cpp" [ 86%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_full_bin_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_bin_newton_omp.cpp.o [ 87%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_smooth_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_smooth_omp.cpp" [ 89%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_smooth_linear_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_ufm_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_ufm_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_yukawa_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_zbl_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp" [ 90%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_brownian_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp" [ 92%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_cd_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_cd_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_cd_omp.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyOMP::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:139:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:141:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:142:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:167:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_alloy_omp.cpp:187:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSOMP::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:139:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:140:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:141:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:142:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:167:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eam_fs_omp.cpp:189:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eim_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eim_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_eim_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_rebo_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_rebo_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_rebo_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_sw_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_sw_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_sw_omp.cpp" [ 93%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_tersoff_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_edip_omp.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_edip_omp.cpp" [ 95%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP/pair_gauss_cut_omp.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/fix_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pppm_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pppm_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pppm_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_beck_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_born_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_born_gpu.cpp" [ 96%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_born_coul_wolf_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_coul_debye_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_coul_debye_gpu.cpp" [ 97%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_coul_dsf_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_gromacs_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_gromacs_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_mie_cut_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_soft_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_soft_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_table_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_ufm_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_ufm_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_yukawa_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_class2_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_class2_gpu.cpp" [ 98%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_class2_coul_long_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_coul_long_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_coul_long_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_lj_charmm_coul_long_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" 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-I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_sw_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" -DvtkRenderingContext2D_AUTOINIT="1(vtkRenderingContextOpenGL)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -DvtkRenderingFreeType_AUTOINIT="2(vtkRenderingFreeTypeFontConfig,vtkRenderingMatplotlib)" -DvtkRenderingLIC_AUTOINIT="1(vtkRenderingParallelLIC)" -DvtkRenderingVolume_AUTOINIT="1(vtkRenderingVolumeOpenGL)" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src" -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/include/python2.7 -I/usr/include/voro++ -I/usr/include/eigen3 -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/arm-linux-gnueabihf -I/usr/include/hdf5/openmpi -I/usr/include/libxml2 -I/usr/include/jsoncpp -I/usr/include/tcl -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/ASPHERE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/BODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CLASS2" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COLLOID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/COMPRESS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/DIPOLE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GRANULAR" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/KSPACE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MANYBODY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MEAM" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MOLECULE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PERI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/REPLICA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/RIGID" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SHOCK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SNAP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/SRD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/PYTHON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/MPIIO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/VORONOI" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/POEMS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-ATC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-AWPMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-BOCS" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGDNA" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MESO" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-CGSDK" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DIFFRACTION" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DPD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-DRUDE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-EFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-FEP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-H5MD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-LB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MANIFOLD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MEAMC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MGPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MISC" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOFFF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-MOLFILE" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-NETCDF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-PHONON" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-QTB" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMD" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SMTBQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-SPH" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-TALLY" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-UEF" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-VTK" -I/usr/include/hdf5/serial -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/CORESHELL" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/QEQ" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/USER-OMP" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/OPT" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/styles" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/molfile" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/meam" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/poems" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/atc" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/systems/interact" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/awpmd/ivutils/include" -I"/build/lammps-0~20181211.gitad1b1897d+dfsg1/lib/h5md/include" -g -O2 -ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_sw_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_sw_gpu.cpp" /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyGPU::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:377:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:378:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:379:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:380:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:405:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_alloy_gpu.cpp:425:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSGPU::read_file(char*)': /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:377:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:378:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:379:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:380:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:405:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ /build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_eam_fs_gpu.cpp:427:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fptr); ~~~~~^~~~~~~~~~~~~~~~~~~ [ 99%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o "CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_gpu.cpp.o" -c "/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_gpu.cpp" [ 99%] Building CXX object CMakeFiles/lmp.dir/build/lammps-0~20181211.gitad1b1897d+dfsg1/src/GPU/pair_tersoff_mod_gpu.cpp.o /usr/bin/c++ -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLMP_HAS_NETCDF -DLMP_MPIIO -DLMP_PYTHON -DLMP_USER_OMP -DNC_64BIT_DATA=0x0020 -DvtkFiltersFlowPaths_AUTOINIT="1(vtkFiltersParallelFlowPaths)" -DvtkIOExodus_AUTOINIT="1(vtkIOParallelExodus)" -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOImage_AUTOINIT="1(vtkIOMPIImage)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOSQL_AUTOINIT="2(vtkIOMySQL,vtkIOPostgreSQL)" 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-ffile-prefix-map=/build/lammps-0~20181211.gitad1b1897d+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -rdynamic @CMakeFiles/lmp.dir/objects1.rsp -o lmp -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/openmpi/lib:/usr/lib/arm-linux-gnueabihf/hdf5/openmpi:/usr/lib/arm-linux-gnueabihf/hdf5/serial: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so -lfftw3 -lpython2.7 -ljpeg -lpng -lz -lvoro++ -lnetcdf -lfreetype /usr/lib/arm-linux-gnueabihf/libvtkDomainsChemistry-6.3.so.6.3.0 -lexpat /usr/lib/arm-linux-gnueabihf/libvtkFiltersGeneric-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersHyperTree-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersParallelFlowPaths-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersParallelGeometry-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersParallelImaging-6.3.so.6.3.0 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/usr/lib/arm-linux-gnueabihf/libvtkRenderingGL2PS-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingContextOpenGL-6.3.so.6.3.0 -lgl2ps /usr/lib/arm-linux-gnueabihf/libvtkIOFFMPEG-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOMovie-6.3.so.6.3.0 -ltheoraenc -ltheoradec -logg /usr/lib/arm-linux-gnueabihf/libvtkIOGDAL-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOGeoJSON-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOImport-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOInfovis-6.3.so.6.3.0 -lxml2 /usr/lib/arm-linux-gnueabihf/libvtkIOMINC-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOMPIImage-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOMPIParallel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOParallel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIONetCDF-6.3.so.6.3.0 -ljsoncpp /usr/lib/arm-linux-gnueabihf/libvtkIOMySQL-6.3.so.6.3.0 -lsqlite3 /usr/lib/arm-linux-gnueabihf/libvtkIOODBC-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOPLY-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOParallelExodus-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOParallelLSDyna-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOParallelNetCDF-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOParallelXML-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOPostgreSQL-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOVPIC-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkVPIC-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOVideo-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOXdmf2-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkxdmf2-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingMath-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingMorphological-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingStatistics-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingStencil-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkInteractionImage-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkLocalExample-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkParallelMPI4Py-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingExternal-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingFreeTypeFontConfig-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingImage-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingLOD-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingMatplotlib-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingParallel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingParallelLIC-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingVolumeAMR-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingVolumeOpenGL-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkTestingGenericBridge-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkTestingIOSQL-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkTestingRendering-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkViewsContext2D-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkViewsGeovis-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkViewsInfovis-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkWrappingJava-6.3.so.6.3.0 -lm libmeam.a libpoems.a libatc.a libawpmd.a libh5md.a libgpu.a -lgfortran -lgcc_s -lgcc -lc /usr/lib/arm-linux-gnueabihf/libvtkFiltersFlowPaths-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOExodus-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkexoIIc-6.3.so.6.3.0 -lnetcdf -lnetcdf_c++ /usr/lib/arm-linux-gnueabihf/libvtkIOLSDyna-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5.so -lxml2 /usr/lib/arm-linux-gnueabihf/libvtkWrappingPython27Core-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkPythonInterpreter-6.3.so.6.3.0 -lpython2.7 /usr/lib/arm-linux-gnueabihf/libvtkFiltersParallel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkParallelMPI-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingLIC-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersAMR-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkParallelCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOLegacy-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingOpenGL-6.3.so.6.3.0 -lGLU -lSM -lICE -lX11 -lXext -lXt /usr/lib/arm-linux-gnueabihf/libvtkIOSQL-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkGeovisCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOXML-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOGeometry-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOXMLParser-6.3.so.6.3.0 -lproj /usr/lib/arm-linux-gnueabihf/libvtkChartsCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingContext2D-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersImaging-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkInfovisLayout-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkInfovisBoostGraphAlgorithms-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkInfovisCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkViewsCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkInteractionWidgets-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersHybrid-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingGeneral-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingSources-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersModeling-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingHybrid-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOImage-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkDICOMParser-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkIOCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkmetaio-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkInteractionStyle-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingAnnotation-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingColor-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingVolume-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingLabel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingFreeType-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkRenderingCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonColor-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersExtraction-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersStatistics-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingFourier-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkImagingCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkalglib-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersGeometry-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersSources-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersGeneral-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkFiltersCore-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonExecutionModel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonComputationalGeometry-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonDataModel-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonMisc-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonTransforms-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonMath-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonSystem-6.3.so.6.3.0 /usr/lib/arm-linux-gnueabihf/libvtksys-6.3.so.6.3.0 -ldl /usr/lib/arm-linux-gnueabihf/libvtkftgl-6.3.so.6.3.0 -lfreetype -lGL /usr/lib/arm-linux-gnueabihf/libvtkCommonCore-6.3.so.6.3.0 -llapack -lblas /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so -lpthread -lz -lsz -ldl -lm -lOpenCL -lgfortran make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [100%] Built target lmp make[2]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' /usr/bin/cmake -E cmake_progress_start "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles" 0 make[1]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' mkdir test; cp examples/crack/* test/ cd test; /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/lmp < in.crack LAMMPS (12 Dec 2018) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:87) using 1 OpenMP thread(s) per MPI task Lattice spacing in x,y,z = 1.11428 1.92998 1.11428 Created orthogonal box = (0 0 -0.278569) to (111.428 77.1994 0.278569) 1 by 1 by 1 MPI processor grid Created 8141 atoms Time spent = 0.0234574 secs 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary 7537 atoms in group mobile 841 atoms in group leftupper 841 atoms in group leftlower Setting atom values ... 841 settings made for type Setting atom values ... 841 settings made for type Setting atom values ... 302 settings made for type Setting atom values ... 302 settings made for type WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:488) Neighbor list info ... update every 1 steps, delay 5 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 2.8 ghost atom cutoff = 2.8 binsize = 1.4, bins = 80 56 1 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair lj/cut, perpetual attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/2d/newton bin: standard Setting up Verlet run ... Unit style : lj Current step : 0 Time step : 0.003 Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes Step Temp E_pair E_mol TotEng Press Volume 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 Loop time of 161.424 on 1 procs for 5000 steps with 8141 atoms Performance: 8028.535 tau/day, 30.974 timesteps/s 66.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 111.44 | 111.44 | 111.44 | 0.0 | 69.03 Neigh | 3.3684 | 3.3684 | 3.3684 | 0.0 | 2.09 Comm | 0.3815 | 0.3815 | 0.3815 | 0.0 | 0.24 Output | 0.0544 | 0.0544 | 0.0544 | 0.0 | 0.03 Modify | 32.078 | 32.078 | 32.078 | 0.0 | 19.87 Other | | 14.11 | | | 8.74 Nlocal: 8141 ave 8141 max 8141 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 71389 ave 71389 max 71389 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 71389 Ave neighs/atom = 8.76907 Neighbor list builds = 100 Dangerous builds = 0 Total wall time: 0:02:41 rm -rf test make[1]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' dh_auto_test -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build -Nlammps create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --sourcedirectory=cmake --builddirectory=/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build dh_testroot -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_prep -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_auto_install -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build cd debian/build && make -j4 install DESTDIR=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' /usr/bin/cmake -S"/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" -B"/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/h5md.dir/DependInfo.cmake" --color= make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/meam.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/meam.dir/build.make CMakeFiles/meam.dir/build make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/gpu.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/awpmd.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/meam.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/h5md.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 1%] Built target meam [ 2%] Built target awpmd make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend [ 2%] Built target h5md make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/poems.dir/DependInfo.cmake" --color= make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/atc.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build make[3]: Nothing to be done for 'CMakeFiles/ocl_get_devices.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 2%] Built target ocl_get_devices make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/poems.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build [ 5%] Built target poems make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/atc.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/gpu.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [ 10%] Built target atc [ 18%] Built target gpu make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' cd "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/cmake" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build" "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles/lmp.dir/DependInfo.cmake" --color= make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/build make[3]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[3]: Nothing to be done for 'CMakeFiles/lmp.dir/build'. make[3]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' [100%] Built target lmp make[2]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' /usr/bin/cmake -E cmake_progress_start "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/bin/lmp -- Set runtime path of "/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/bin/lmp" to "" -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/man/man1/lmp.1 -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_2.meam.spline -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mo_Chen_PRM2017.snapparam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta4.mgpt.parmin -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.parmin -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta06A.snapparam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CC.KC-full -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_prb.agni -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.edip -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_1990.tersoff -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni.meam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdZnTe_v1.bop.table -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_mishin1.eam.alloy -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.1997.vashishta -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.smtbq.TiO2 -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/README.reax -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.tersoff -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.sw -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.cho -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.eim -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuH.bop.table -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlFe_mm.eam.fs -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.ZnOH -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_zhou.eam.alloy -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.smtbq.Al2O3 -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_u6.eam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ni_smf7.eam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta06A.snap -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC_Erhart-Albe.tersoff -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.edip -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlO.eam.alloy -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si_1.meam.spline -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/BNC.tersoff -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2.snapcoeff -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CH.KC -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/InP.vashishta -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2_He_JW2013.snap -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuNi.eam.alloy -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CC.KC -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CH_taper.KC -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CuTa.eam.alloy -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ti.meam.sw.spline -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/README -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiC.vashishta -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Au_u3.eam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/FeCr.cdeam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/TiO.meam.spline -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.lg -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.comb3 -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Al_jpc.agni -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Mg_mm.eam.fs -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/BNCH.ILP -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/W_2940_2017_2.snapparam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ta6.8x.mgpt.parmin -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiCGe.tersoff -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ffield.reax.Fe_O_C_H -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/WL.meam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Pd_u3.eam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/V6.1.mgpt.potin -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Pt_u3.eam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/ci-reaxFF_ZBL.dat -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTe.bop.table -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlSiMgCuFe.meam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CdTeSe.bop.table -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlCu.adp -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/AlCu.bop.table -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/BN.extep -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Ge.tersoff -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/SiO.tersoff -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.tersoff.modc -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/library.meam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Si.b.meam.sw.spline -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/Cu_smf7.eam -- Installing: /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/tmp/usr/share/lammps/potentials/CCu_v2.bop.table -- 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-O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_installexamples -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_installman -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_installinit -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_perl -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_link -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_strip_nondeterminism -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_compress -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' dh_fixperms -i find /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/ -type f -print -exec chmod 644 {} \; /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/message/in.message.tilt /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/message/in.message /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/message/Script.sh /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/message/in.message.server /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/message/in.message.client /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/message/in.message.tilt.client /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/message/in.message.tilt.server /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/message/README.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/in.mp /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/in.ehex /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/profile.7Jun16.ehex.g++.8.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/profile.1Feb14.mp.g++.8.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/in.heatflux /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/README /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/profile.1Feb14.langevin.g++.8.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/in.heat /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/profile.1Feb14.heatflux.g++.8.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/in.langevin /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/KAPPA/profile.7Jun16.heat.g++.8.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/in.voronoi.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/README /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/in.voronoi.data /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/voronoi/in.voronoi.2d /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.neigh.dynamic /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.clock.static /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.group.dynamic /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.var.dynamic /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.bond.slow /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.neigh.static /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/balance/in.balance.kspace 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/build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_interpolate /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_combined.screen.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_flux /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/Ar_thermal.mat /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_hoover.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_frac_step /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d.screen.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.no_atoms /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_combined /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_lumped /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/temp.init.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_frac_step.screen.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/in.bar1d_all_atoms.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_all_atoms.screen.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/bar1d_flux.screen.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/USER/atc/thermal/no_atoms.screen.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/data.streitz.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/AlO.eam.alloy.gz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/in.streitz.ewald /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/AlO.streitz /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/streitz/in.streitz.wolf /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/atm/in.atm /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/eim/in.eim /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/examples/eim/data.eim.gz find /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps/ -type f -print0 | xargs -0 sed -i 's/https:\/\/cdn\.mathjax\.org\/mathjax\/latest/\/usr\/share\/javascript\/mathjax/g' rm -rf /build/lammps-0~20181211.gitad1b1897d+dfsg1/debian/lammps-doc/usr/share/doc/lammps-doc/doc/doc2 make[1]: Leaving directory '/build/lammps-0~20181211.gitad1b1897d+dfsg1' dh_fixperms -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build -Nlammps-doc -Nlammps-data dh_missing -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_strip -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_makeshlibs -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_shlibdeps -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dpkg-shlibdeps: warning: debian/lammps/usr/bin/lmp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingIOSQL-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisBoostGraphAlgorithms-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallel-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingCore-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersHybrid-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersAMR-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGeoJSON-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOPostgreSQL-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkChartsCore-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libjsoncpp.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOEnSight-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingParallel-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkWrappingJava-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libogg.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOXdmf2-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMPIImage-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingFourier-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOExport-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOVideo-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOLSDyna-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkxdmf2-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtksys-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingMath-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libfreetype.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersExtraction-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGeometry-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelImaging-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsContext2D-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingMorphological-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelCore-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingCore-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkWrappingPython27Core-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkftgl-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSelection-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libXext.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonMisc-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingGL2PS-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOExodus-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingFreeTypeFontConfig-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingParallelLIC-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLOD-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingGenericBridge-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolume-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libSM.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersCore-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionStyle-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libexpat.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonTransforms-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersProgrammable-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkLocalExample-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersPython-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelLSDyna-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsCore-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeneric-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersReebGraph-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersFlowPaths-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libnetcdf_c++.so.4 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersHyperTree-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkPythonInterpreter-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelFlowPaths-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOSQL-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisLayout-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingMatplotlib-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libICE.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionImage-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libX11.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libgl2ps.so.1.4 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMovie-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libxml2.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelMPI-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallel-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingFreeType-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeneral-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInfovisCore-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonMath-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOImport-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libGLU.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtiff.so.5 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingImage-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOVPIC-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingExternal-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonColor-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersImaging-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libGL.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingGeneral-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libproj.so.13 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMINC-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOFFMPEG-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSMP-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonSystem-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelNetCDF-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLIC-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkalglib-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkmetaio-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOPLY-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingStatistics-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsGeovis-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkVPIC-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkInteractionWidgets-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkGeovisCore-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersTexture-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersSources-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkParallelMPI4Py-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libsz.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libhdf5_serial.so.103 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelStatistics-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersVerdict-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingHybrid-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolumeOpenGL-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingOpenGL-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libsqlite3.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOGDAL-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOParallelExodus-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtheoradec.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersModeling-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelGeometry-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libXt.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingAnnotation-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libmpi_cxx.so.40 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingSources-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkTestingRendering-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonExecutionModel-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingStencil-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libtheoraenc.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOXMLParser-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkexoIIc-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkDICOMParser-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOMySQL-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOImage-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOAMR-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersParallelMPI-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersStatistics-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkCommonComputationalGeometry-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkDomainsChemistry-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingLabel-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingContextOpenGL-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingVolumeAMR-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOInfovis-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkRenderingContext2D-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkImagingColor-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkViewsInfovis-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkverdict-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIONetCDF-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkFiltersGeometry-6.3.so.6.3 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/lammps/usr/bin/lmp was not linked against libvtkIOODBC-6.3.so.6.3 (it uses none of the library's symbols) dh_installdeb -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_gencontrol -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_md5sums -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dh_builddeb -O--sourcedirectory=cmake -O--builddirectory=/build/lammps-0\~20181211.gitad1b1897d\+dfsg1/debian/build dpkg-deb: building package 'lammps' in '../lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.deb'. dpkg-deb: building package 'lammps-dbgsym' in '../lammps-dbgsym_0~20181211.gitad1b1897d+dfsg1-2_armhf.deb'. dpkg-deb: building package 'lammps-data' in '../lammps-data_0~20181211.gitad1b1897d+dfsg1-2_all.deb'. dpkg-deb: building package 'lammps-doc' in '../lammps-doc_0~20181211.gitad1b1897d+dfsg1-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../lammps_0~20181211.gitad1b1897d+dfsg1-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/14943/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/14943/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/14943 and its subdirectories I: Current time: Fri Jul 3 19:41:42 +14 2020 I: pbuilder-time-stamp: 1593754902