I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 14 15:16:18 -12 2020 I: pbuilder-time-stamp: 1592190978 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [hyphy_2.3.14+dfsg-1.dsc] I: copying [./hyphy_2.3.14+dfsg.orig.tar.xz] I: copying [./hyphy_2.3.14+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Sep 26 03:04:23 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hyphy_2.3.14+dfsg-1.dsc dpkg-source: info: extracting hyphy in hyphy-2.3.14+dfsg dpkg-source: info: unpacking hyphy_2.3.14+dfsg.orig.tar.xz dpkg-source: info: unpacking hyphy_2.3.14+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_sqlite.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying drop_profiling_option.patch dpkg-source: info: applying remove_unneeded_test.patch dpkg-source: info: applying msse_option_only_if_available.patch dpkg-source: info: applying remove_arch_specific_flags.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5620/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='2d7001b9299a44a8bb9a6320bd82b09a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5620' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.5m1XTIrXFP/pbuilderrc_Bs42 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.5m1XTIrXFP/b1 --logfile b1/build.log hyphy_2.3.14+dfsg-1.dsc' SUDO_GID='116' SUDO_UID='112' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux cbxi4b 4.19.0-9-armmp #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash -rwxr-xr-x 1 root root 71648 Feb 28 2019 date -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd -rwxr-xr-x 1 root root 55672 Feb 28 2019 df -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 18260 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln -rwxr-xr-x 1 root root 34932 Jul 26 2018 login -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 9 2019 more -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 12 20:27 sh -> dash -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty -rwsr-xr-x 1 root root 42472 Jan 9 2019 su -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch -rwxr-xr-x 1 root root 18260 Feb 28 2019 true -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/5620/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), cmake (>= 3.0), mpi-default-dev, libcurl4-gnutls-dev | libcurl4-dev, libssl-dev, libsqlite3-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.0); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl4-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl4-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libedit2{a} libelf1{a} libevent-2.1-6{a} libevent-core-2.1-6{a} libevent-pthreads-2.1-6{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc5{a} libibverbs-dev{a} libibverbs1{a} libicu63{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix2{a} libprocps7{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsqlite3-dev{a} libssh2-1{a} libssl-dev{a} libssl1.1{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 36.1 MB of archives. After unpacking 120 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 8 http://deb.debian.org/debian buster/main armhf libprocps7 armhf 2:3.3.15-2 [58.7 kB] Get: 9 http://deb.debian.org/debian buster/main armhf lsb-base all 10.2019051400 [28.4 kB] Get: 10 http://deb.debian.org/debian buster/main armhf procps armhf 2:3.3.15-2 [248 kB] Get: 11 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 12 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 14 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 15 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 16 http://deb.debian.org/debian buster/main armhf libedit2 armhf 3.1-20181209-1 [79.5 kB] Get: 17 http://deb.debian.org/debian buster/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libkrb5support0 armhf 1.17-3 [62.3 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libk5crypto3 armhf 1.17-3 [119 kB] Get: 20 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libkrb5-3 armhf 1.17-3 [323 kB] Get: 22 http://deb.debian.org/debian buster/main armhf libgssapi-krb5-2 armhf 1.17-3 [137 kB] Get: 23 http://deb.debian.org/debian buster/main armhf openssh-client armhf 1:7.9p1-10+deb10u2 [704 kB] Get: 24 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 25 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 26 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 27 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 28 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 29 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 30 http://deb.debian.org/debian buster/main armhf cmake-data all 3.13.4-1 [1476 kB] Get: 31 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 32 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 33 http://deb.debian.org/debian buster/main armhf libarchive13 armhf 3.3.3-4+deb10u1 [277 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-1+deb10u1 [67.4 kB] Get: 35 http://deb.debian.org/debian buster/main armhf libsasl2-2 armhf 2.1.27+dfsg-1+deb10u1 [98.9 kB] Get: 36 http://deb.debian.org/debian buster/main armhf libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 37 http://deb.debian.org/debian buster/main armhf libldap-2.4-2 armhf 2.4.47+dfsg-3+deb10u2 [202 kB] Get: 38 http://deb.debian.org/debian buster/main armhf libnghttp2-14 armhf 1.36.0-2+deb10u1 [74.4 kB] Get: 39 http://deb.debian.org/debian buster/main armhf libpsl5 armhf 0.20.2-2 [52.4 kB] Get: 40 http://deb.debian.org/debian buster/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.9 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libssh2-1 armhf 1.8.0-2.1 [129 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libcurl4 armhf 7.64.0-4+deb10u1 [297 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 44 http://deb.debian.org/debian buster/main armhf libjsoncpp1 armhf 1.7.4-3 [67.8 kB] Get: 45 http://deb.debian.org/debian buster/main armhf librhash0 armhf 1.3.8-1 [134 kB] Get: 46 http://deb.debian.org/debian buster/main armhf libuv1 armhf 1.24.1-1 [98.0 kB] Get: 47 http://deb.debian.org/debian buster/main armhf cmake armhf 3.13.4-1 [2848 kB] Get: 48 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 49 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 50 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 51 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 52 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 53 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 54 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 55 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 57 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 58 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 59 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 60 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 61 http://deb.debian.org/debian buster/main armhf libnl-3-200 armhf 3.4.0-1 [55.6 kB] Get: 62 http://deb.debian.org/debian buster/main armhf libnl-route-3-200 armhf 3.4.0-1 [136 kB] Get: 63 http://deb.debian.org/debian buster/main armhf libibverbs1 armhf 22.1-1 [44.1 kB] Get: 64 http://deb.debian.org/debian buster/main armhf ibverbs-providers armhf 22.1-1 [20.2 kB] Get: 65 http://deb.debian.org/debian buster/main armhf libcurl3-gnutls armhf 7.64.0-4+deb10u1 [295 kB] Get: 66 http://deb.debian.org/debian buster/main armhf libcurl4-gnutls-dev armhf 7.64.0-4+deb10u1 [389 kB] Get: 67 http://deb.debian.org/debian buster/main armhf libevent-2.1-6 armhf 2.1.8-stable-4 [159 kB] Get: 68 http://deb.debian.org/debian buster/main armhf libevent-core-2.1-6 armhf 2.1.8-stable-4 [118 kB] Get: 69 http://deb.debian.org/debian buster/main armhf libevent-pthreads-2.1-6 armhf 2.1.8-stable-4 [47.6 kB] Get: 70 http://deb.debian.org/debian buster/main armhf libgfortran5 armhf 8.3.0-6 [213 kB] Get: 71 http://deb.debian.org/debian buster/main armhf libltdl7 armhf 2.4.6-9 [387 kB] Get: 72 http://deb.debian.org/debian buster/main armhf libhwloc5 armhf 1.11.12-3 [87.6 kB] Get: 73 http://deb.debian.org/debian buster/main armhf libltdl-dev armhf 2.4.6-9 [160 kB] Get: 74 http://deb.debian.org/debian buster/main armhf libhwloc-dev armhf 1.11.12-3 [153 kB] Get: 75 http://deb.debian.org/debian buster/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB] Get: 76 http://deb.debian.org/debian buster/main armhf ocl-icd-libopencl1 armhf 2.2.12-2 [35.6 kB] Get: 77 http://deb.debian.org/debian buster/main armhf libhwloc-plugins armhf 1.11.12-3 [15.7 kB] Get: 78 http://deb.debian.org/debian buster/main armhf libnl-3-dev armhf 3.4.0-1 [96.9 kB] Get: 79 http://deb.debian.org/debian buster/main armhf libnl-route-3-dev armhf 3.4.0-1 [162 kB] Get: 80 http://deb.debian.org/debian buster/main armhf libibverbs-dev armhf 22.1-1 [151 kB] Get: 81 http://deb.debian.org/debian buster/main armhf libpmix2 armhf 3.1.2-3 [449 kB] Get: 82 http://deb.debian.org/debian buster/main armhf libopenmpi3 armhf 3.1.3-11 [1890 kB] Get: 83 http://deb.debian.org/debian buster/main armhf openmpi-common all 3.1.3-11 [165 kB] Get: 84 http://deb.debian.org/debian buster/main armhf openmpi-bin armhf 3.1.3-11 [198 kB] Get: 85 http://deb.debian.org/debian buster/main armhf libopenmpi-dev armhf 3.1.3-11 [964 kB] Get: 86 http://deb.debian.org/debian buster/main armhf libsqlite3-dev armhf 3.27.2-3 [722 kB] Get: 87 http://deb.debian.org/debian buster/main armhf libssl-dev armhf 1.1.1d-0+deb10u3 [1597 kB] Get: 88 http://deb.debian.org/debian buster/main armhf mpi-default-dev armhf 1.13 [5476 B] Fetched 36.1 MB in 3s (10.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... 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Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../21-libgssapi-krb5-2_1.17-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.17-3) ... Selecting previously unselected package openssh-client. Preparing to unpack .../22-openssh-client_1%3a7.9p1-10+deb10u2_armhf.deb ... Unpacking openssh-client (1:7.9p1-10+deb10u2) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../23-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../24-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../25-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../26-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. 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Selecting previously unselected package librhash0:armhf. Preparing to unpack .../44-librhash0_1.3.8-1_armhf.deb ... Unpacking librhash0:armhf (1.3.8-1) ... Selecting previously unselected package libuv1:armhf. Preparing to unpack .../45-libuv1_1.24.1-1_armhf.deb ... Unpacking libuv1:armhf (1.24.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../46-cmake_3.13.4-1_armhf.deb ... Unpacking cmake (3.13.4-1) ... Selecting previously unselected package libtool. Preparing to unpack .../47-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../48-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../49-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. 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Selecting previously unselected package libhwloc-dev:armhf. Preparing to unpack .../73-libhwloc-dev_1.11.12-3_armhf.deb ... Unpacking libhwloc-dev:armhf (1.11.12-3) ... Selecting previously unselected package libpciaccess0:armhf. Preparing to unpack .../74-libpciaccess0_0.14-1_armhf.deb ... Unpacking libpciaccess0:armhf (0.14-1) ... Selecting previously unselected package ocl-icd-libopencl1:armhf. Preparing to unpack .../75-ocl-icd-libopencl1_2.2.12-2_armhf.deb ... Unpacking ocl-icd-libopencl1:armhf (2.2.12-2) ... Selecting previously unselected package libhwloc-plugins:armhf. Preparing to unpack .../76-libhwloc-plugins_1.11.12-3_armhf.deb ... Unpacking libhwloc-plugins:armhf (1.11.12-3) ... Selecting previously unselected package libnl-3-dev:armhf. Preparing to unpack .../77-libnl-3-dev_3.4.0-1_armhf.deb ... Unpacking libnl-3-dev:armhf (3.4.0-1) ... Selecting previously unselected package libnl-route-3-dev:armhf. Preparing to unpack .../78-libnl-route-3-dev_3.4.0-1_armhf.deb ... Unpacking libnl-route-3-dev:armhf (3.4.0-1) ... Selecting previously unselected package libibverbs-dev:armhf. Preparing to unpack .../79-libibverbs-dev_22.1-1_armhf.deb ... Unpacking libibverbs-dev:armhf (22.1-1) ... Selecting previously unselected package libpmix2:armhf. Preparing to unpack .../80-libpmix2_3.1.2-3_armhf.deb ... Unpacking libpmix2:armhf (3.1.2-3) ... Selecting previously unselected package libopenmpi3:armhf. Preparing to unpack .../81-libopenmpi3_3.1.3-11_armhf.deb ... Unpacking libopenmpi3:armhf (3.1.3-11) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../82-openmpi-common_3.1.3-11_all.deb ... Unpacking openmpi-common (3.1.3-11) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../83-openmpi-bin_3.1.3-11_armhf.deb ... Unpacking openmpi-bin (3.1.3-11) ... Selecting previously unselected package libopenmpi-dev:armhf. Preparing to unpack .../84-libopenmpi-dev_3.1.3-11_armhf.deb ... Unpacking libopenmpi-dev:armhf (3.1.3-11) ... Selecting previously unselected package libsqlite3-dev:armhf. Preparing to unpack .../85-libsqlite3-dev_3.27.2-3_armhf.deb ... Unpacking libsqlite3-dev:armhf (3.27.2-3) ... Selecting previously unselected package libssl-dev:armhf. Preparing to unpack .../86-libssl-dev_1.1.1d-0+deb10u3_armhf.deb ... Unpacking libssl-dev:armhf (1.1.1d-0+deb10u3) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../87-mpi-default-dev_1.13_armhf.deb ... Unpacking mpi-default-dev (1.13) ... Setting up libexpat1:armhf (2.2.6-2+deb10u1) ... Setting up libpipeline1:armhf (1.5.1-2) ... Setting up lsb-base (10.2019051400) ... Setting up libpciaccess0:armhf (0.14-1) ... Setting up libkeyutils1:armhf (1.6-6) ... Setting up libpsl5:armhf (0.20.2-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:armhf (1.1.1d-0+deb10u3) ... Setting up libprocps7:armhf (2:3.3.15-2) ... Setting up libnghttp2-14:armhf (1.36.0-2+deb10u1) ... Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up libkrb5support0:armhf (1.17-3) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-1+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:armhf (1.24.1-1) ... Setting up libsqlite3-dev:armhf (3.27.2-3) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libssl-dev:armhf (1.1.1d-0+deb10u3) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:armhf (1.17-3) ... Setting up libltdl7:armhf (2.4.6-9) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-1+deb10u1) ... Setting up libevent-core-2.1-6:armhf (2.1.8-stable-4) ... Setting up libgfortran5:armhf (8.3.0-6) ... Setting up libevent-2.1-6:armhf (2.1.8-stable-4) ... Setting up sensible-utils (0.0.12) ... Setting up ocl-icd-libopencl1:armhf (2.2.12-2) ... Setting up librhash0:armhf (1.3.8-1) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libnl-3-200:armhf (3.4.0-1) ... Setting up openmpi-common (3.1.3-11) ... Setting up libssh2-1:armhf (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:armhf (1.17-3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up libjsoncpp1:armhf (1.7.4-3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libevent-pthreads-2.1-6:armhf (2.1.8-stable-4) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:armhf (3.3.3-4+deb10u1) ... Setting up libhwloc5:armhf (1.11.12-3) ... Setting up libedit2:armhf (3.1-20181209-1) ... Setting up libldap-2.4-2:armhf (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libhwloc-plugins:armhf (1.11.12-3) ... Setting up libnl-route-3-200:armhf (3.4.0-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:armhf (1.17-3) ... Setting up libcroco3:armhf (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up libnl-3-dev:armhf (3.4.0-1) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:armhf (7.64.0-4+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:armhf (22.1-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpmix2:armhf (3.1.2-3) ... Setting up ibverbs-providers:armhf (22.1-1) ... Setting up openssh-client (1:7.9p1-10+deb10u2) ... Setting up libopenmpi3:armhf (3.1.3-11) ... Setting up libcurl3-gnutls:armhf (7.64.0-4+deb10u1) ... Setting up libcurl4-gnutls-dev:armhf (7.64.0-4+deb10u1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:armhf (3.4.0-1) ... Setting up libltdl-dev:armhf (2.4.6-9) ... Setting up cmake (3.13.4-1) ... Setting up libhwloc-dev:armhf (1.11.12-3) ... Setting up openmpi-bin (3.1.3-11) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:armhf (22.1-1) ... Setting up libopenmpi-dev:armhf (3.1.3-11) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up mpi-default-dev (1.13) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/hyphy-2.3.14+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package hyphy dpkg-buildpackage: info: source version 2.3.14+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/hyphy-2.3.14+dfsg' dh_auto_clean make[1]: Leaving directory '/build/hyphy-2.3.14+dfsg' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build dh build --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/hyphy-2.3.14+dfsg' dh_auto_configure -- -DINSTALL_PREFIX=/usr cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DINSTALL_PREFIX=/usr .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_AVX_EXTENSIONS -- Performing Test HAVE_AVX_EXTENSIONS - Failed -- Performing Test HAVE_SSE3_EXTENSIONS -- Performing Test HAVE_SSE3_EXTENSIONS - Failed Set compiler flags to -fsigned-char -O3 -- Looking for amd_log in libamdlibm.so -- Looking for amd_log in libamdlibm.so - not found -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found CURL: /usr/lib/arm-linux-gnueabihf/libcurl.so (found version "7.64.0") -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Found SQLITE3: /usr/lib/arm-linux-gnueabihf/libsqlite3.so -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) -- Looking for pthread.h -- Looking for pthread.h - not found -- Could NOT find Threads (missing: Threads_FOUND) -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - not found -- Looking for CL_VERSION_2_1 -- Looking for CL_VERSION_2_1 - not found -- Looking for CL_VERSION_2_0 -- Looking for CL_VERSION_2_0 - not found -- Looking for CL_VERSION_1_2 -- Looking for CL_VERSION_1_2 - not found -- Looking for CL_VERSION_1_1 -- Looking for CL_VERSION_1_1 - not found -- Looking for CL_VERSION_1_0 -- Looking for CL_VERSION_1_0 - not found -- Could NOT find OpenCL (missing: OpenCL_LIBRARY OpenCL_INCLUDE_DIR) -- Found MPI_C: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR INSTALL_PREFIX -- Build files have been written to: /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/hyphy-2.3.14+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/hyphy-2.3.14+dfsg' # no idea about the purpose of the dynamic library - executables are not simply linked against it dh_auto_build -- MP MPI GTEST # LIB cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" MP MPI GTEST make[2]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/hyphy-2.3.14+dfsg -B/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 MP make[3]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/hyphy-2.3.14+dfsg -B/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 24 make -f CMakeFiles/Makefile2 CMakeFiles/MP.dir/all make[4]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/HYPHYMP.dir/build.make CMakeFiles/HYPHYMP.dir/depend make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' cd /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/HYPHYMP.dir/DependInfo.cmake --color= Scanning dependencies of target HYPHYMP make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/HYPHYMP.dir/build.make CMakeFiles/HYPHYMP.dir/build make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' [ 0%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/_hyExecutionContext.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/_hyExecutionContext.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/_hyExecutionContext.cpp [ 4%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllist.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/avllist.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/avllist.cpp [ 4%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/alignment.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/alignment.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/alignment.cpp [ 4%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllistx.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/avllistx.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/avllistx.cpp [ 8%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllistxl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/avllistxl.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/avllistxl.cpp [ 8%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllistxl_iterator.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/avllistxl_iterator.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/avllistxl_iterator.cpp [ 12%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/baseobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/baseobj.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/baseobj.cpp [ 12%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/batchlan.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/batchlan.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/batchlan.cpp [ 16%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/batchlan2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/batchlan2.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/batchlan2.cpp [ 16%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/batchlanhelpers.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/batchlanhelpers.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/batchlanhelpers.cpp [ 20%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/batchlanruntime.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMP.dir/src/core/batchlanruntime.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/batchlanruntime.cpp [ 20%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/calcnode.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 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-D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/avllistx.cpp [ 8%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/avllistxl.cpp [ 8%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistxl_iterator.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl_iterator.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/avllistxl_iterator.cpp [ 12%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/baseobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/baseobj.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/baseobj.cpp [ 12%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlan.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w 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-I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/category.cpp [ 29%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat 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-D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/fstring.cpp [ 37%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/global_object_lists.cpp [ 37%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -w -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/hbl_env.cpp [ 41%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 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/usr/bin/c++ -D__HYPHYCURL__ -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0 -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/src/gtest-all.cc [ 3%] Linking CXX static library libgtest.a cd /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf/contrib/gtest-1.7.0 && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf/contrib/gtest-1.7.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc libgtest.a 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CMakeFiles/HYPHYGTEST.dir/src/core/_hyExecutionContext.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/_hyExecutionContext.cpp.o -c /build/hyphy-2.3.14+dfsg/src/core/_hyExecutionContext.cpp [ 3%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/avllist.cpp.o [ 7%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/alignment.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYGTEST.dir/src/core/avllist.cpp.o -c 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/src/utils/hyphyunixutils.cpp.o -c /build/hyphy-2.3.14+dfsg/src/utils/hyphyunixutils.cpp [ 88%] Building CXX object CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_avllists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_avllists.cpp.o -c /build/hyphy-2.3.14+dfsg/tests/gtests/ut_avllists.cpp [ 92%] Building CXX object CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_list.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_list.cpp.o -c /build/hyphy-2.3.14+dfsg/tests/gtests/ut_list.cpp [ 92%] Building CXX object CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_simplelists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_simplelists.cpp.o -c /build/hyphy-2.3.14+dfsg/tests/gtests/ut_simplelists.cpp [ 96%] Building CXX object CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_strings.cpp.o -c /build/hyphy-2.3.14+dfsg/tests/gtests/ut_strings.cpp [ 96%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/mains/unix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__UNITTEST__ -D__UNIX__ -I/build/hyphy-2.3.14+dfsg/src/core/include -I/build/hyphy-2.3.14+dfsg/src/lib/Link -I/build/hyphy-2.3.14+dfsg/src/new/include -I/build/hyphy-2.3.14+dfsg/contrib/gtest-1.7.0/include -I/build/hyphy-2.3.14+dfsg/tests/gtests -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp -o CMakeFiles/HYPHYGTEST.dir/src/mains/unix.cpp.o -c /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp: In function '_String getLibraryPath()': /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp:209:12: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] getcwd (curWd,_HYPHY_MAX_PATH_LENGTH); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp: In function 'long int DisplayListOfChoices()': /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp:407:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ~~~~~~^~~~~~~~~~~~~~~~~~~ /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp:408:19: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ~~~~~~^~~~~~~~~~~~~~~~~~~ /build/hyphy-2.3.14+dfsg/src/mains/unix.cpp:451:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ~~~~~~^~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable HYPHYGTEST /usr/bin/cmake -E cmake_link_script CMakeFiles/HYPHYGTEST.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hyphy-2.3.14+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -fsigned-char -O3 -Wall -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-sign-compare -Wno-maybe-uninitialized -fopenmp CMakeFiles/HYPHYGTEST.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/alignment.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/avllist.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/avllistx.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/avllistxl.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/avllistxl_iterator.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/baseobj.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/batchlan.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/batchlan2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/batchlanhelpers.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/batchlanruntime.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/calcnode.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/calcnode2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/category.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/constant.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/error.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/fisher_exact.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/formula.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/fstring.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/global_object_lists.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/hbl_env.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/likefunc.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/likefunc2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/likefuncocl.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/list.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/mathobj.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/matrix.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/nexus.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/operation.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/parser.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/parser2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/polynoml.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/regex.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/sequence.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/site.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/stack.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/string_file_wrapper.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/strings.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/time_difference.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/trie.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/variable.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYGTEST.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_avllists.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_list.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_simplelists.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_strings.cpp.o CMakeFiles/HYPHYGTEST.dir/src/mains/unix.cpp.o -o HYPHYGTEST -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 contrib/gtest-1.7.0/libgtest.a make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' [100%] Built target HYPHYGTEST make -f CMakeFiles/GTEST.dir/build.make CMakeFiles/GTEST.dir/depend make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' cd /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/GTEST.dir/DependInfo.cmake --color= Scanning dependencies of target GTEST make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/GTEST.dir/build.make CMakeFiles/GTEST.dir/build make[5]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make[5]: Nothing to be done for 'CMakeFiles/GTEST.dir/build'. make[5]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' [100%] Built target GTEST make[4]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 make[3]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make[2]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make[1]: Leaving directory '/build/hyphy-2.3.14+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/hyphy-2.3.14+dfsg' find obj-* -name HYPHYGTEST -exec \{\} \; [==========] Running 180 tests from 6 test cases. [----------] Global test environment set-up. [----------] 18 tests from AVLListTest [ RUN ] AVLListTest.FindTest [ OK ] AVLListTest.FindTest (1 ms) [ RUN ] AVLListTest.FindLongTest [ OK ] AVLListTest.FindLongTest (0 ms) [ RUN ] AVLListTest.FindBestTest [ OK ] AVLListTest.FindBestTest (0 ms) [ RUN ] AVLListTest.NextTest [ OK ] AVLListTest.NextTest (0 ms) [ RUN ] AVLListTest.PrevTest [ OK ] AVLListTest.PrevTest (0 ms) [ RUN ] AVLListTest.FirstTest [ OK ] AVLListTest.FirstTest (0 ms) [ RUN ] AVLListTest.LastTest [ OK ] AVLListTest.LastTest (0 ms) [ RUN ] AVLListTest.GetByIndexTest [ OK ] AVLListTest.GetByIndexTest (0 ms) [ RUN ] AVLListTest.ReorderListTest [ OK ] AVLListTest.ReorderListTest (0 ms) [ RUN ] AVLListTest.TraverserTest [ OK ] AVLListTest.TraverserTest (0 ms) [ RUN ] AVLListTest.toStrTest [ OK ] AVLListTest.toStrTest (0 ms) [ RUN ] AVLListTest.RetrieveTest [ OK ] AVLListTest.RetrieveTest (0 ms) [ RUN ] AVLListTest.ClearTest [ OK ] AVLListTest.ClearTest (0 ms) [ RUN ] AVLListTest.InsertTest [ OK ] AVLListTest.InsertTest (0 ms) [ RUN ] AVLListTest.InsertDataTest [ OK ] AVLListTest.InsertDataTest (0 ms) [ RUN ] AVLListTest.HasDataTest [ OK ] AVLListTest.HasDataTest (0 ms) [ RUN ] AVLListTest.DeleteTest [ OK ] AVLListTest.DeleteTest (0 ms) [ RUN ] AVLListTest.countitemsTest [ OK ] AVLListTest.countitemsTest (0 ms) [----------] 18 tests from AVLListTest (2 ms total) [----------] 4 tests from AVLListXLTest [ RUN ] AVLListXLTest.ClearTest [ OK ] AVLListXLTest.ClearTest (0 ms) [ RUN ] AVLListXLTest.InsertDataTest [ OK ] AVLListXLTest.InsertDataTest (0 ms) [ RUN ] AVLListXLTest.DeleteXtraTest [ OK ] AVLListXLTest.DeleteXtraTest (0 ms) [ RUN ] AVLListXLTest.SetAndGetXtraTest [ OK ] AVLListXLTest.SetAndGetXtraTest (0 ms) [----------] 4 tests from AVLListXLTest (0 ms total) [----------] 4 tests from AVLListXTest [ RUN ] AVLListXTest.InsertDataTest [ OK ] AVLListXTest.InsertDataTest (0 ms) [ RUN ] AVLListXTest.DeleteXtraTest [ OK ] AVLListXTest.DeleteXtraTest (0 ms) [ RUN ] AVLListXTest.PopulateFromListTest [ OK ] AVLListXTest.PopulateFromListTest (0 ms) [ RUN ] AVLListXTest.SetAndGetXtraTest [ OK ] AVLListXTest.SetAndGetXtraTest (0 ms) [----------] 4 tests from AVLListXTest (5 ms total) [----------] 33 tests from ListTest [ RUN ] ListTest._NothingListTest [ OK ] ListTest._NothingListTest (0 ms) [ RUN ] ListTest._LengthConstructorListTest [ OK ] ListTest._LengthConstructorListTest (0 ms) [ RUN ] ListTest._StackCopyConstructorListTest [ OK ] ListTest._StackCopyConstructorListTest (0 ms) [ RUN ] ListTest._SubStrConstructorListTest [ OK ] ListTest._SubStrConstructorListTest (0 ms) [ RUN ] ListTest._DataConstructorListTest [ OK ] ListTest._DataConstructorListTest (0 ms) [ RUN ] ListTest.paranthesisTest [ OK ] ListTest.paranthesisTest (0 ms) [ RUN ] ListTest.EqualOpTest [ OK ] ListTest.EqualOpTest (0 ms) [ RUN ] ListTest.EqualTest [ OK ] ListTest.EqualTest (1 ms) [ RUN ] ListTest.AmpersandOpTest [ OK ] ListTest.AmpersandOpTest (0 ms) [ RUN ] ListTest.Ampersand2OpTest [ OK ] ListTest.Ampersand2OpTest (0 ms) [ RUN ] ListTest.DoubleAmpersandOpTest [ OK ] ListTest.DoubleAmpersandOpTest (0 ms) [ RUN ] ListTest.DoubleAmpersand2OpTest [ OK ] ListTest.DoubleAmpersand2OpTest (0 ms) [ RUN ] ListTest.DoubleLessOpTest [ OK ] ListTest.DoubleLessOpTest (0 ms) [ RUN ] ListTest.DoubleLess2OpTest [ OK ] ListTest.DoubleLess2OpTest (0 ms) [ RUN ] ListTest.AppendNewInstanceTest [ OK ] ListTest.AppendNewInstanceTest (0 ms) [ RUN ] ListTest.PlaceTest [ OK ] ListTest.PlaceTest (0 ms) [ RUN ] ListTest.InsertElementTest [ OK ] ListTest.InsertElementTest (0 ms) [ RUN ] ListTest.getStrTest [ OK ] ListTest.getStrTest (0 ms) [ RUN ] ListTest.makeDynamicTest [ OK ] ListTest.makeDynamicTest (0 ms) [ RUN ] ListTest.toFileStrTest [ OK ] ListTest.toFileStrTest (0 ms) [ RUN ] ListTest.bumpNInstTest [ OK ] ListTest.bumpNInstTest (0 ms) [ RUN ] ListTest.FindStringTest [ OK ] ListTest.FindStringTest (0 ms) [ RUN ] ListTest.JoinTest [ OK ] ListTest.JoinTest (0 ms) [ RUN ] ListTest.BinaryFindTest [ OK ] ListTest.BinaryFindTest (0 ms) [ RUN ] ListTest.BinaryInsertTest [ OK ] ListTest.BinaryInsertTest (0 ms) [ RUN ] ListTest.CompareTest [ OK ] ListTest.CompareTest (0 ms) [ RUN ] ListTest.Compare2Test [ OK ] ListTest.Compare2Test (0 ms) [ RUN ] ListTest.FreeUpMemoryTest [ OK ] ListTest.FreeUpMemoryTest (0 ms) [ RUN ] ListTest.ClearTest [ OK ] ListTest.ClearTest (0 ms) [ RUN ] ListTest.DeleteTest [ OK ] ListTest.DeleteTest (0 ms) [ RUN ] ListTest.DeleteListTest [ OK ] ListTest.DeleteListTest (0 ms) [ RUN ] ListTest.ReplaceTest [ OK ] ListTest.ReplaceTest (0 ms) [ RUN ] ListTest.IntersectTest [ OK ] ListTest.IntersectTest (0 ms) [----------] 33 tests from ListTest (2 ms total) [----------] 44 tests from SimpleListTest [ RUN ] SimpleListTest._StackCopyConstructorListTest [ OK ] SimpleListTest._StackCopyConstructorListTest (0 ms) [ RUN ] SimpleListTest._PopulateTest [ OK ] SimpleListTest._PopulateTest (0 ms) [ RUN ] SimpleListTest._BracketOpTest [ OK ] SimpleListTest._BracketOpTest (0 ms) [ RUN ] SimpleListTest._ParenthOpTest [ OK ] SimpleListTest._ParenthOpTest (0 ms) [ RUN ] SimpleListTest._EqualOpTest [ OK ] SimpleListTest._EqualOpTest (0 ms) [ RUN ] SimpleListTest._DoubleLessOpTest [ OK ] SimpleListTest._DoubleLessOpTest (0 ms) [ RUN ] SimpleListTest._OffsetTest [ OK ] SimpleListTest._OffsetTest (0 ms) [ RUN ] SimpleListTest._ElementTest [ OK ] SimpleListTest._ElementTest (0 ms) [ RUN ] SimpleListTest._PopTest [ OK ] SimpleListTest._PopTest (0 ms) [ RUN ] SimpleListTest._countitemsTest [ OK ] SimpleListTest._countitemsTest (0 ms) [ RUN ] SimpleListTest._EqualTest [ OK ] SimpleListTest._EqualTest (0 ms) [ RUN ] SimpleListTest._MergeTest [ OK ] SimpleListTest._MergeTest (0 ms) [ RUN ] SimpleListTest.DoubleGreaterOpTest [ OK ] SimpleListTest.DoubleGreaterOpTest (0 ms) [ RUN ] SimpleListTest._ListToPartitionStringTest [ OK ] SimpleListTest._ListToPartitionStringTest (0 ms) [ RUN ] SimpleListTest._RequestSpaceTest [ OK ] SimpleListTest._RequestSpaceTest (0 ms) [ RUN ] SimpleListTest._toStrTest [ OK ] SimpleListTest._toStrTest (13 ms) [ RUN ] SimpleListTest._makeDynamicTest [ OK ] SimpleListTest._makeDynamicTest (0 ms) [ RUN ] SimpleListTest._MinTest [ OK ] SimpleListTest._MinTest (0 ms) [ RUN ] SimpleListTest._MaxTest [ OK ] SimpleListTest._MaxTest (0 ms) [ RUN ] SimpleListTest._ClearFormulasInListTest [ OK ] SimpleListTest._ClearFormulasInListTest (0 ms) [ RUN ] SimpleListTest._CountingSortTest [ OK ] SimpleListTest._CountingSortTest (0 ms) [ RUN ] SimpleListTest._BinaryInsertTest [ OK ] SimpleListTest._BinaryInsertTest (0 ms) [ RUN ] SimpleListTest._FindTest [ OK ] SimpleListTest._FindTest (0 ms) [ RUN ] SimpleListTest._FindSteppingTest [ OK ] SimpleListTest._FindSteppingTest (0 ms) [ RUN ] SimpleListTest._FilterRangeTest [ OK ] SimpleListTest._FilterRangeTest (0 ms) [ RUN ] SimpleListTest._BinaryFindTest [ OK ] SimpleListTest._BinaryFindTest (0 ms) [ RUN ] SimpleListTest._SortTest [ OK ] SimpleListTest._SortTest (0 ms) [ RUN ] SimpleListTest._CompareTest [ OK ] SimpleListTest._CompareTest (0 ms) [ RUN ] SimpleListTest._ClearTest [ OK ] SimpleListTest._ClearTest (0 ms) [ RUN ] SimpleListTest._DeleteTest [ OK ] SimpleListTest._DeleteTest (0 ms) [ RUN ] SimpleListTest._TrimMemoryTest [ OK ] SimpleListTest._TrimMemoryTest (0 ms) [ RUN ] SimpleListTest._DeleteDuplicatesTest [ OK ] SimpleListTest._DeleteDuplicatesTest (0 ms) [ RUN ] SimpleListTest._DeleteListTest [ OK ] SimpleListTest._DeleteListTest (0 ms) [ RUN ] SimpleListTest._DisplaceTest [ OK ] SimpleListTest._DisplaceTest (0 ms) [ RUN ] SimpleListTest._PermuteWithReplacementTest [ OK ] SimpleListTest._PermuteWithReplacementTest (0 ms) [ RUN ] SimpleListTest._PermuteTest [ OK ] SimpleListTest._PermuteTest (0 ms) [ RUN ] SimpleListTest._NChooseKTest [ OK ] SimpleListTest._NChooseKTest (0 ms) [ RUN ] SimpleListTest._SwapTest [ OK ] SimpleListTest._SwapTest (0 ms) [ RUN ] SimpleListTest._FlipTest [ OK ] SimpleListTest._FlipTest (0 ms) [ RUN ] SimpleListTest._UnionTest [ OK ] SimpleListTest._UnionTest (0 ms) [ RUN ] SimpleListTest._IntersectTest [ OK ] SimpleListTest._IntersectTest (0 ms) [ RUN ] SimpleListTest._CountCommonElementsTest [ OK ] SimpleListTest._CountCommonElementsTest (0 ms) [ RUN ] SimpleListTest._XORTest [ OK ] SimpleListTest._XORTest (0 ms) [ RUN ] SimpleListTest._SubtractTest [ OK ] SimpleListTest._SubtractTest (0 ms) [----------] 44 tests from SimpleListTest (15 ms total) [----------] 77 tests from StringTest [ RUN ] StringTest.InitializeTest [ OK ] StringTest.InitializeTest (0 ms) [ RUN ] StringTest.DuplicateTest [ OK ] StringTest.DuplicateTest (0 ms) [ RUN ] StringTest.DuplicateErasingTest [ OK ] StringTest.DuplicateErasingTest (0 ms) [ RUN ] StringTest.makeDynamicTest [ OK ] StringTest.makeDynamicTest (0 ms) [ RUN ] StringTest.getCharTest [ OK ] StringTest.getCharTest (1 ms) [ RUN ] StringTest.setCharTest [ OK ] StringTest.setCharTest (0 ms) [ RUN ] StringTest.CopyDynamicStringTest [ OK ] StringTest.CopyDynamicStringTest (0 ms) [ RUN ] StringTest.LengthTest [ OK ] StringTest.LengthTest (0 ms) [ RUN ] StringTest.InsertTest [ OK ] StringTest.InsertTest (0 ms) [ RUN ] StringTest.DeleteTest [ OK ] StringTest.DeleteTest (0 ms) [ RUN ] StringTest.AppendNewInstanceTest [ OK ] StringTest.AppendNewInstanceTest (0 ms) [ RUN ] StringTest.EscapeAndAppendTest [ OK ] StringTest.EscapeAndAppendTest (0 ms) [ RUN ] StringTest.EscapeAndAppend2Test [ OK ] StringTest.EscapeAndAppend2Test (0 ms) [ RUN ] StringTest.FinalizeTest [ OK ] StringTest.FinalizeTest (0 ms) [ RUN ] StringTest.getStrTest [ OK ] StringTest.getStrTest (0 ms) [ RUN ] StringTest.ChopTest [ OK ] StringTest.ChopTest (0 ms) [ RUN ] StringTest.CutTest [ OK ] StringTest.CutTest (0 ms) [ RUN ] StringTest.FlipTest [ OK ] StringTest.FlipTest (0 ms) [ RUN ] StringTest.Adler32Test [ OK ] StringTest.Adler32Test (0 ms) [ RUN ] StringTest.TrimTest [ OK ] StringTest.TrimTest (0 ms) [ RUN ] StringTest.FirstNonSpaceIndexTest [ OK ] StringTest.FirstNonSpaceIndexTest (0 ms) [ RUN ] StringTest.KillSpacesTest [ OK ] StringTest.KillSpacesTest (0 ms) [ RUN ] StringTest.CompressSpacesTest [ OK ] StringTest.CompressSpacesTest (0 ms) [ RUN ] StringTest.FirstSpaceIndexTest [ OK ] StringTest.FirstSpaceIndexTest (0 ms) [ RUN ] StringTest.FirstNonSpaceTest [ OK ] StringTest.FirstNonSpaceTest (1 ms) [ RUN ] StringTest.FirstNonSpace2Test [ OK ] StringTest.FirstNonSpace2Test (0 ms) [ RUN ] StringTest.FindTest [ OK ] StringTest.FindTest (0 ms) [ RUN ] StringTest.FindCharTest [ OK ] StringTest.FindCharTest (0 ms) [ RUN ] StringTest.FindKMPTest [ OK ] StringTest.FindKMPTest (0 ms) [ RUN ] StringTest.FindEndOfIdentTest [ OK ] StringTest.FindEndOfIdentTest (0 ms) [ RUN ] StringTest.FindAnyCaseTest [ OK ] StringTest.FindAnyCaseTest (0 ms) [ RUN ] StringTest.ContainsSubstringTest [ OK ] StringTest.ContainsSubstringTest (0 ms) [ RUN ] StringTest.FindBackwardsTest [ OK ] StringTest.FindBackwardsTest (0 ms) [ RUN ] StringTest.FindBinaryTest [ OK ] StringTest.FindBinaryTest (0 ms) [ RUN ] StringTest.EqualsTest [ OK ] StringTest.EqualsTest (0 ms) [ RUN ] StringTest.CompareTest [ OK ] StringTest.CompareTest (0 ms) [ RUN ] StringTest.EqualWithWildCharTest [ OK ] StringTest.EqualWithWildCharTest (0 ms) [ RUN ] StringTest.GreaterTest [ OK ] StringTest.GreaterTest (0 ms) [ RUN ] StringTest.LessTest [ OK ] StringTest.LessTest (0 ms) [ RUN ] StringTest.containsTest [ OK ] StringTest.containsTest (0 ms) [ RUN ] StringTest.beginswithTest [ OK ] StringTest.beginswithTest (0 ms) [ RUN ] StringTest.startswithTest [ OK ] StringTest.startswithTest (0 ms) [ RUN ] StringTest.endswithTest [ OK ] StringTest.endswithTest (0 ms) [ RUN ] StringTest.FormatTimeStringTest [ OK ] StringTest.FormatTimeStringTest (2 ms) [ RUN ] StringTest.ReplaceTest [ OK ] StringTest.ReplaceTest (0 ms) [ RUN ] StringTest.TokenizeTest [ OK ] StringTest.TokenizeTest (0 ms) [ RUN ] StringTest.toNumTest [ OK ] StringTest.toNumTest (0 ms) [ RUN ] StringTest.UpCaseTest [ OK ] StringTest.UpCaseTest (0 ms) [ RUN ] StringTest.LoCaseTest [ OK ] StringTest.LoCaseTest (0 ms) [ RUN ] StringTest.ProcessTreeBranchLengthTest [ OK ] StringTest.ProcessTreeBranchLengthTest (0 ms) [ RUN ] StringTest.ExtractEnclosedExpressionTest [ OK ] StringTest.ExtractEnclosedExpressionTest (0 ms) [ RUN ] StringTest.IsALiteralArgumentTest [ OK ] StringTest.IsALiteralArgumentTest (0 ms) [ RUN ] StringTest.StripQuotesTest [ OK ] StringTest.StripQuotesTest (0 ms) [ RUN ] StringTest.IsValidIdentifierTest [ OK ] StringTest.IsValidIdentifierTest (0 ms) [ RUN ] StringTest.IsValidRefIdentifierTest [ OK ] StringTest.IsValidRefIdentifierTest (0 ms) [ RUN ] StringTest.PathCompositionTest [ OK ] StringTest.PathCompositionTest (0 ms) [ RUN ] StringTest.PathSubtractionTest [ OK ] StringTest.PathSubtractionTest (0 ms) [ RUN ] StringTest.ConvertToAnIdentTest [ OK ] StringTest.ConvertToAnIdentTest (0 ms) [ RUN ] StringTest.ShortenVarIDTest [ OK ] StringTest.ShortenVarIDTest (0 ms) [ RUN ] StringTest.RegExpMatchOnceTest [ OK ] StringTest.RegExpMatchOnceTest (0 ms) [ RUN ] StringTest.RegExpMatchTest [ OK ] StringTest.RegExpMatchTest (0 ms) [ RUN ] StringTest.RegExpMatchAllTest [ OK ] StringTest.RegExpMatchAllTest (1 ms) [ RUN ] StringTest.LempelZivProductionHistoryTest [ OK ] StringTest.LempelZivProductionHistoryTest (0 ms) [ RUN ] StringTest.SortTest [ OK ] StringTest.SortTest (0 ms) [ RUN ] StringTest.FindTerminatorTest [ OK ] StringTest.FindTerminatorTest (0 ms) [ RUN ] StringTest.AppendAnAssignmentToBufferTest [ OK ] StringTest.AppendAnAssignmentToBufferTest (0 ms) [ RUN ] StringTest.BracketTest [ OK ] StringTest.BracketTest (0 ms) [ RUN ] StringTest.ParanthTest [ OK ] StringTest.ParanthTest (0 ms) [ RUN ] StringTest.EqualTest [ OK ] StringTest.EqualTest (0 ms) [ RUN ] StringTest.AmpersandTest [ OK ] StringTest.AmpersandTest (0 ms) [ RUN ] StringTest.DoubleLessTest [ OK ] StringTest.DoubleLessTest (0 ms) [ RUN ] StringTest.DoubleEqualTest [ OK ] StringTest.DoubleEqualTest (0 ms) [ RUN ] StringTest.GreaterOpTest [ OK ] StringTest.GreaterOpTest (0 ms) [ RUN ] StringTest.LesserOpTest [ OK ] StringTest.LesserOpTest (0 ms) [ RUN ] StringTest.LesserEqualOpTest [ OK ] StringTest.LesserEqualOpTest (0 ms) [ RUN ] StringTest.GreaterEqualOpTest [ OK ] StringTest.GreaterEqualOpTest (0 ms) [ RUN ] StringTest.NotEqualOpTest [ OK ] StringTest.NotEqualOpTest (0 ms) [----------] 77 tests from StringTest (6 ms total) [----------] Global test environment tear-down [==========] 180 tests from 6 test cases ran. (31 ms total) [ PASSED ] 180 tests. corrupted size vs. prev_size find: 'obj-arm-linux-gnueabihf/HYPHYGTEST' terminated by signal 6 make[1]: Leaving directory '/build/hyphy-2.3.14+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=cmake dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/hyphy-2.3.14\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/hyphy-2.3.14+dfsg -B/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/HYPHYMP.dir/build.make CMakeFiles/HYPHYMP.dir/depend make -f CMakeFiles/HYPHYMPI.dir/build.make CMakeFiles/HYPHYMPI.dir/depend make[3]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' cd /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/HYPHYMPI.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' cd /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/HYPHYMP.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/HYPHYMPI.dir/build.make CMakeFiles/HYPHYMPI.dir/build make[3]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/HYPHYMP.dir/build.make CMakeFiles/HYPHYMP.dir/build make[3]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/HYPHYMP.dir/build'. make[3]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/HYPHYMPI.dir/build'. make[3]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' [ 50%] Built target HYPHYMP [100%] Built target HYPHYMPI make[2]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Contigency Table -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Samplers -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Samplers/srs.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Samplers/sir.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Samplers/lhc.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Select Cells By Value -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Complex Select Cells By Value -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToFrontierFastaFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToFastaFileFromPandit.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToFastaFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/DescriptiveStats.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/FromSQLFlatFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToConsole.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToChartWindow.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/HY_DBW_TemplateList -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToTabFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToSQLFlatFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Running Sum -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Sort -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Linear Fit -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Goodness of Fit -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Median Profile Plot -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Gaussian Penalty Clustering -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Approximate_CDF -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/SingleColumn -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Distribution Moments -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Histogram -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/K-Mean Clustering -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Mean Profile Plot -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Covariance -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Profile Mean Clustering -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Populate Cells -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Column Operations -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Poisson Mixture Fit -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/KH Resampler -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Select Cells By Index -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Descriptive Statistics -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Event Posteriors -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Most Likely Class Assignment -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Posterior Moments -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Posterior Distribution -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Prior Moments -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Includes -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Includes/posteriors.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/MeanPairwiseDivergence -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/AAContent -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ModelFitSummaryAA -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/Multiclass DN DS inference -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/dS and dN factors -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/AAMutationCounter -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/dNanddSTrees.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ModelFitSummary -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ConvergentAndParallel -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ExpsPerDirection -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/SimulateFromLF -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/RNARateMatrix -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/TreeLengthConstraint -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/DashPSTree -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/SimulateAndTabDN_DS -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ColorPSTree -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/InferredAASubstitutionsCounter -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/FilterAssignments -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/PredictivePosteriorP -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/PartitionBranchesByClasses -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/CodonMutationToTreeMapper.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/LocaldNdS -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/CopyBranchLengths -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/MeanPairwiseDivergenceSubset -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/SimulateFromLF -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/RecombinationProcessor.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/CodonMutationToTreeMapper -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/GenBankSequences -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/ModelCounter -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/LRT -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/MapSubstitutions -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/ListUserFunctions -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Tidbits -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/ExportLikelihoodFunction -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/BranchLengthCI -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/CountSubstitutions -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Includes -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Includes/ChooseALF.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Includes/MappersHelpAA.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Includes/MappersHelp.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/BatchFileByURL -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Star_Decomposition -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Support -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Support/branchSwappingFunctions.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Support/doSPRSwap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Support/doNNISwap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Exhaustive_Search -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Neighbor_Joining -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Sequential_Addition -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV/Equal -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV/Observed In Partition -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV/Estimated -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/dinuc.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/Half Normal -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/General Discrete -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/Lognormal -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/Beta -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params. -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV/Observed Codon -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV/Equal -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/aa.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/codon.bf -- Installing: 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/build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_npbs.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Kernel_k_means.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/CompareSelectivePressure.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TreeTools.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TestClade.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelSelectorCodonProcessor.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TestBranchDNDS.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/CompareSelectivePressureIVL.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/RelativeRate.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/distanceMethodNPBootstrap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_counting.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/RelativeRatio.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MFPSreader.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/chooseDistanceFormula.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/doSPRSwap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Samplers -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Samplers/srs.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Samplers/sir.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Samplers/lhc.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Samplers/lhc_supp.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SimmondsAI.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TestCladeMeans.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MFPositiveSelection.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SGIvL.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/CodonToProtein.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelTest.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SampleProcessor.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/PairwiseSiteDiversity.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/PartitionDataFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SGEmulator.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/binary -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/binary/empirical.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/binary/charbinary.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JTT.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/HIV.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/WAG.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JC69.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/mt.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/gcpREV.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/LG.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/empirical.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/REV.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein/matrix2dict_aux.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/rate_variation.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/protein.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/codon -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/parameters.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/binary.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/DNA.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/codon.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/DNA -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/DNA/HKY85.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/models/DNA/JC69.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/IOFunctions.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/convenience -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/convenience/matrix.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/convenience/regexp.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/convenience/math.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/convenience/random.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/stats.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/tasks -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/tasks/trees.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/tasks/estimators.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/tasks/alignments.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/tasks/genetic_code.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/tasks/bayesgraph.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/UtilityFunctions.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/libv3/all-terms.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GA_CHC.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper3.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/BranchClassDNDS.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignment.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/BS2007.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq2.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SequentialAddition.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SequentialAddition.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/WebUpdate.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentNuc.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/LEISR.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/190 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAREV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/PCH -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/models.lst -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/S4 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EX.dat -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNA16A -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Default -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/PositiveSelectionLI.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/StarDecomposition.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MGvsGY.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GUI -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GUI/crayolaColors.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Gateaux.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MEDS.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/DistanceMatrix.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/454.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/bayesgraph.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Phylohandbook.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/PARRIS.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GARecomb.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Deprecated -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Deprecated/QuickSelectionDetection.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/CodonUsageBias.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AnalyzeCodonDataMPI.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelSelectorCodon.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Plato.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AddABias.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/doNNISwap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/PartitionRateComparison.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dNdSDistributionComparisonPartitions.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SGASimProcessor.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MaxChi2.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper2.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_covariance.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TopologySearchConstrained.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/QuickSelectionDetection-MEME-internal.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/molclockBootstrap.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SimpleMutationCounter.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SlatkinMaddison-2parts.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GA_CHC_kernel.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ConvertDataFile.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL-contrast.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/testers -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/testers/FitModel.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/Simulators -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/Simulators/FADE.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/Simulators/BUSTED.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-SRV.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL-NS.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/selectModelParameters.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MolecularClock.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentTop75.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/globalChecker.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelSelectorRNA_1.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dNdSDistributionComparison.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelSelectorRNA.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/StripStopCodons.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dNdSRateAnalysis_MF.bf -- Installing: 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/build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/Jones.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Binary -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Binary/F81.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/TrN.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/REV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/F81.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/User -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/User/Nucleotide -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/User/Nucleotide/JC69 -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/User/Nucleotide/K2P -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/Character Plot -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/ibfs -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/ibfs/char_colors.def -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/TBD -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/TBD/Character Plot By Sequence -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/Compare Subsets -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/Sequence Plot -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/Character Plot Two -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TreeAddIns -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TreeAddIns/Tree Statistics -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/TreeAddIns/Splits -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Blepharisma_Nuclear.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Ciliate.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Echinoderm_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Invertebrate_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Euplotid_Nuclear.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Yeast_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Flatworm_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Mold_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Vertebratemtdna.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Ascidian_mtDNA.cod -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/data -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/data/p51.nex -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/data/integrase_BDA.nex -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/data/brown.nuc -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/lib/hyphy/data/p51.aa -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/bin/HYPHYMP -- Installing: /build/hyphy-2.3.14+dfsg/debian/tmp/usr/bin/HYPHYMPI -- Set runtime path of "/build/hyphy-2.3.14+dfsg/debian/tmp/usr/bin/HYPHYMPI" to "" make[1]: Leaving directory '/build/hyphy-2.3.14+dfsg/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/build/hyphy-2.3.14+dfsg' # smallcaps for executables for bindir in `find . -type d -name bin` ; do \ for bin in ${bindir}/* ; do \ # ln -s `basename ${bin}` ${bindir}/`basename ${bin} | tr [A-Z] [a-z]` ; \ mv ${bindir}/`basename ${bin}` ${bindir}/`basename ${bin} | tr [A-Z] [a-z]` ; \ done ; \ done dh_install make[1]: Leaving directory '/build/hyphy-2.3.14+dfsg' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installinit -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_strip -O--buildsystem=cmake dh_makeshlibs -O--buildsystem=cmake dh_shlibdeps -O--buildsystem=cmake dpkg-shlibdeps: warning: debian/hyphy-pt/usr/bin/hyphymp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-pt/usr/bin/hyphymp was not linked against libdl.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-pt/usr/bin/hyphymp was not linked against libssl.so.1.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-pt/usr/bin/hyphymp was not linked against libcrypto.so.1.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: debian/hyphy-mpi/usr/bin/hyphympi contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-mpi/usr/bin/hyphympi was not linked against libssl.so.1.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-mpi/usr/bin/hyphympi was not linked against libdl.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-mpi/usr/bin/hyphympi was not linked against libmpi_cxx.so.40 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hyphy-mpi/usr/bin/hyphympi was not linked against libcrypto.so.1.1 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.3.14+dfsg-1_armhf.deb'. dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.3.14+dfsg-1_armhf.deb'. dpkg-deb: building package 'hyphy-common' in '../hyphy-common_2.3.14+dfsg-1_all.deb'. dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.3.14+dfsg-1_armhf.deb'. dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.3.14+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../hyphy_2.3.14+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5620 and its subdirectories I: Current time: Sun Jun 14 15:50:39 -12 2020 I: pbuilder-time-stamp: 1592193039