I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 6 23:07:45 +14 2020 I: pbuilder-time-stamp: 1601975265 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [chemfp_1.1p1-2.1.dsc] I: copying [./chemfp_1.1p1.orig.tar.gz] I: copying [./chemfp_1.1p1-2.1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Nov 15 07:04:23 2014 +14 gpgv: using RSA key 3362F7031A4992E1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./chemfp_1.1p1-2.1.dsc dpkg-source: info: extracting chemfp in chemfp-1.1p1 dpkg-source: info: unpacking chemfp_1.1p1.orig.tar.gz dpkg-source: info: unpacking chemfp_1.1p1-2.1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/13545/tmp/hooks/D01_modify_environment starting debug: Running on jtk1a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/13545/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/13545/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=9fb2a616c9a0468baf45418777a179d1 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=13545 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.7nIFo69lSk/pbuilderrc_tdbE --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.7nIFo69lSk/b2 --logfile b2/build.log chemfp_1.1p1-2.1.dsc' SUDO_GID=113 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:8000/ I: uname -a Linux i-capture-the-hostname 4.19.0-11-armmp-lpae #1 SMP Debian 4.19.146-1 (2020-09-17) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash -rwxr-xr-x 1 root root 71648 Mar 1 2019 date -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd -rwxr-xr-x 1 root root 55672 Mar 1 2019 df -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 18260 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln -rwxr-xr-x 1 root root 34932 Jul 27 2018 login -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 10 2019 more -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Oct 6 23:09 sh -> bash lrwxrwxrwx 1 root root 4 Sep 21 22:27 sh.distrib -> dash -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty -rwsr-xr-x 1 root root 42472 Jan 10 2019 su -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch -rwxr-xr-x 1 root root 18260 Mar 1 2019 true -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/13545/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 7.0.50~), python-all-dev (>= 2.6.6-3~), python-openbabel, python-rdkit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 7.0.50~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on python-all-dev (>= 2.6.6-3~); however: Package python-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python-openbabel; however: Package python-openbabel is not installed. pbuilder-satisfydepends-dummy depends on python-rdkit; however: Package python-rdkit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-freefont-ttf{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-python1.67.0{a} libboost-serialization1.67.0{a} libbsd0{a} libcairo2{a} libcroco3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libopenbabel5{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} librdkit1{a} libreadline7{a} libschroedinger-coordgenlibs1{a} libschroedinger-maeparser1{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-dev{a} python-minimal{a} python-numpy{a} python-openbabel{a} python-pkg-resources{a} python-rdkit{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} rdkit-data{a} readline-common{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 85.0 MB of archives. After unpacking 219 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf libpython2.7-minimal armhf 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main armhf python2.7-minimal armhf 2.7.16-2+deb10u1 [1171 kB] Get: 9 http://deb.debian.org/debian buster/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main armhf python-minimal armhf 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB] Get: 12 http://deb.debian.org/debian buster/main armhf mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 14 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB] Get: 16 http://deb.debian.org/debian buster/main armhf libpython2.7-stdlib armhf 2.7.16-2+deb10u1 [1837 kB] Get: 17 http://deb.debian.org/debian buster/main armhf python2.7 armhf 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main armhf python2 armhf 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main armhf python armhf 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 24 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 25 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 26 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 27 http://deb.debian.org/debian buster/main armhf ucf all 3.0038+nmu1 [69.0 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 29 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 30 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 31 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 32 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 33 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 35 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 36 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 37 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 38 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 39 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 40 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 44 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 45 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 46 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 47 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 48 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 49 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 50 http://deb.debian.org/debian buster/main armhf fonts-dejavu-core all 2.37-1 [1068 kB] Get: 51 http://deb.debian.org/debian buster/main armhf fontconfig-config all 2.13.1-2 [280 kB] Get: 52 http://deb.debian.org/debian buster/main armhf fonts-freefont-ttf all 20120503-9 [4319 kB] Get: 53 http://deb.debian.org/debian buster/main armhf libgfortran5 armhf 8.3.0-6 [213 kB] Get: 54 http://deb.debian.org/debian buster/main armhf libblas3 armhf 3.8.0-2 [109 kB] Get: 55 http://deb.debian.org/debian buster/main armhf libboost-python1.67.0 armhf 1.67.0-13+deb10u1 [307 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libboost-serialization1.67.0 armhf 1.67.0-13+deb10u1 [303 kB] Get: 57 http://deb.debian.org/debian buster/main armhf libpng16-16 armhf 1.6.36-6 [275 kB] Get: 58 http://deb.debian.org/debian buster/main armhf libfreetype6 armhf 2.9.1-3+deb10u1 [322 kB] Get: 59 http://deb.debian.org/debian buster/main armhf libfontconfig1 armhf 2.13.1-2 [328 kB] Get: 60 http://deb.debian.org/debian buster/main armhf libpixman-1-0 armhf 0.36.0-1 [465 kB] Get: 61 http://deb.debian.org/debian buster/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB] Get: 62 http://deb.debian.org/debian buster/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 63 http://deb.debian.org/debian buster/main armhf libxcb1 armhf 1.13.1-2 [132 kB] Get: 64 http://deb.debian.org/debian buster/main armhf libx11-data all 2:1.6.7-1+deb10u1 [294 kB] Get: 65 http://deb.debian.org/debian buster/main armhf libx11-6 armhf 2:1.6.7-1+deb10u1 [698 kB] Get: 66 http://deb.debian.org/debian buster/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB] Get: 67 http://deb.debian.org/debian buster/main armhf libxcb-shm0 armhf 1.13.1-2 [99.0 kB] Get: 68 http://deb.debian.org/debian buster/main armhf libxext6 armhf 2:1.3.3-1+b2 [48.1 kB] Get: 69 http://deb.debian.org/debian buster/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 70 http://deb.debian.org/debian buster/main armhf libcairo2 armhf 1.16.0-4 [616 kB] Get: 71 http://deb.debian.org/debian buster/main armhf libexpat1-dev armhf 2.2.6-2+deb10u1 [126 kB] Get: 72 http://deb.debian.org/debian buster/main armhf liblapack3 armhf 3.8.0-2 [1631 kB] Get: 73 http://deb.debian.org/debian buster/main armhf libopenbabel5 armhf 2.4.1+dfsg-3 [2634 kB] Get: 74 http://deb.debian.org/debian buster/main armhf libpython2.7 armhf 2.7.16-2+deb10u1 [892 kB] Get: 75 http://deb.debian.org/debian buster/main armhf libpython2.7-dev armhf 2.7.16-2+deb10u1 [31.0 MB] Get: 76 http://deb.debian.org/debian buster/main armhf libpython2-dev armhf 2.7.16-1 [20.9 kB] Get: 77 http://deb.debian.org/debian buster/main armhf libpython-dev armhf 2.7.16-1 [20.9 kB] Get: 78 http://deb.debian.org/debian buster/main armhf libpython-all-dev armhf 2.7.16-1 [1064 B] Get: 79 http://deb.debian.org/debian buster/main armhf libschroedinger-maeparser1 armhf 1.0.1-4 [37.9 kB] Get: 80 http://deb.debian.org/debian buster/main armhf libschroedinger-coordgenlibs1 armhf 1.1-3 [142 kB] Get: 81 http://deb.debian.org/debian buster/main armhf librdkit1 armhf 201809.1+dfsg-6 [2375 kB] Get: 82 http://deb.debian.org/debian buster/main armhf python-all armhf 2.7.16-1 [1044 B] Get: 83 http://deb.debian.org/debian buster/main armhf python2.7-dev armhf 2.7.16-2+deb10u1 [291 kB] Get: 84 http://deb.debian.org/debian buster/main armhf python2-dev armhf 2.7.16-1 [1216 B] Get: 85 http://deb.debian.org/debian buster/main armhf python-dev armhf 2.7.16-1 [1192 B] Get: 86 http://deb.debian.org/debian buster/main armhf python-all-dev armhf 2.7.16-1 [1068 B] Get: 87 http://deb.debian.org/debian buster/main armhf python-pkg-resources all 40.8.0-1 [182 kB] Get: 88 http://deb.debian.org/debian buster/main armhf python-numpy armhf 1:1.16.2-1 [1885 kB] Get: 89 http://deb.debian.org/debian buster/main armhf python-openbabel armhf 2.4.1+dfsg-3 [571 kB] Get: 90 http://deb.debian.org/debian buster/main armhf rdkit-data all 201809.1+dfsg-6 [6771 kB] Get: 91 http://deb.debian.org/debian buster/main armhf python-rdkit armhf 201809.1+dfsg-6 [2658 kB] Fetched 85.0 MB in 16s (5326 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... 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Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20397 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_armhf.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:armhf (1.1.1d-0+deb10u3) ... Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up fonts-freefont-ttf (20120503-9) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up rdkit-data (201809.1+dfsg-6) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up libschroedinger-maeparser1:armhf (1.0.1-4) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:armhf (2.2.6-2+deb10u1) ... Setting up libx11-data (2:1.6.7-1+deb10u1) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libpng16-16:armhf (1.6.36-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libgfortran5:armhf (8.3.0-6) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libboost-python1.67.0 (1.67.0-13+deb10u1) ... Setting up libboost-serialization1.67.0:armhf (1.67.0-13+deb10u1) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up libreadline7:armhf (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libxcb1:armhf (1.13.1-2) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:armhf (1.13.1-2) ... Setting up m4 (1.4.18-2) ... Setting up libschroedinger-coordgenlibs1:armhf (1.1-3) ... Setting up libxcb-shm0:armhf (1.13.1-2) ... Setting up libpython2.7-stdlib:armhf (2.7.16-2+deb10u1) ... Setting up libblas3:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libfreetype6:armhf (2.9.1-3+deb10u1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libx11-6:armhf (2:1.6.7-1+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython2.7:armhf (2.7.16-2+deb10u1) ... Setting up liblapack3:armhf (3.8.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libpython2.7-dev:armhf (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libpython2-stdlib:armhf (2.7.16-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up librdkit1 (201809.1+dfsg-6) ... Setting up libxext6:armhf (2:1.3.3-1+b2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:armhf (2.7.16-1) ... Setting up libpython2-dev:armhf (2.7.16-1) ... Setting up libfontconfig1:armhf (2.13.1-2) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python2-dev (2.7.16-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python-all (2.7.16-1) ... Setting up libcairo2:armhf (1.16.0-4) ... Setting up libpython-dev:armhf (2.7.16-1) ... Setting up python-dev (2.7.16-1) ... Setting up libpython-all-dev:armhf (2.7.16-1) ... Setting up python-numpy (1:1.16.2-1) ... Setting up libopenbabel5 (2.4.1+dfsg-3) ... Setting up python-openbabel (2.4.1+dfsg-3) ... Setting up python-rdkit (201809.1+dfsg-6) ... Setting up python-all-dev (2.7.16-1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/chemfp-1.1p1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package chemfp dpkg-buildpackage: info: source version 1.1p1-2.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrey Rahmatullin dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with python2 --parallel dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_auto_clean -O--parallel dh_auto_clean: Compatibility levels before 9 are deprecated (level 7 in use) dh_auto_clean: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_clean: This feature will be removed in compat 12. pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions pyversions: missing debian/pyversions file, fall back to supported versions python setup.py clean -a running clean 'build/lib.linux-armv7l-2.7' does not exist -- can't clean it 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it find . -name \*.pyc -exec rm {} \+ dh_clean -O--parallel dh_clean: Compatibility levels before 9 are deprecated (level 7 in use) debian/rules build dh build --with python2 --parallel dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_update_autotools_config -O--parallel dh_auto_configure -O--parallel dh_auto_configure: Compatibility levels before 9 are deprecated (level 7 in use) dh_auto_configure: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_configure: This feature will be removed in compat 12. debian/rules override_dh_auto_build make[1]: Entering directory '/build/chemfp-1.1p1' dh_auto_build -- --without-ssse3 dh_auto_build: Compatibility levels before 9 are deprecated (level 7 in use) dh_auto_build: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_build: This feature will be removed in compat 12. pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions pyversions: missing debian/pyversions file, fall back to supported versions python setup.py build --force --without-ssse3 running build running build_py creating build creating build/lib.linux-armv7l-2.7 creating build/lib.linux-armv7l-2.7/chemfp copying chemfp/slow.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/rdkit_patterns.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/openbabel_patterns.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/openeye.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/search.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/rdkit.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/sdf_reader.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/openeye_patterns.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/argparse.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/io.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/arena.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/decoders.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/openbabel.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/pattern_fingerprinter.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/Watcher.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/fps_io.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/__init__.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/bitops.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/fps_search.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/encodings.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/error_handlers.py -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/types.py -> build/lib.linux-armv7l-2.7/chemfp creating build/lib.linux-armv7l-2.7/chemfp/commandline copying chemfp/commandline/ob2fps.py -> build/lib.linux-armv7l-2.7/chemfp/commandline copying chemfp/commandline/rdkit2fps.py -> build/lib.linux-armv7l-2.7/chemfp/commandline copying chemfp/commandline/fpsmerge.py -> build/lib.linux-armv7l-2.7/chemfp/commandline copying chemfp/commandline/simsearch.py -> build/lib.linux-armv7l-2.7/chemfp/commandline copying chemfp/commandline/sdf2fps.py -> build/lib.linux-armv7l-2.7/chemfp/commandline copying chemfp/commandline/oe2fps.py -> build/lib.linux-armv7l-2.7/chemfp/commandline copying chemfp/commandline/__init__.py -> build/lib.linux-armv7l-2.7/chemfp/commandline copying chemfp/commandline/cmdsupport.py -> build/lib.linux-armv7l-2.7/chemfp/commandline creating build/lib.linux-armv7l-2.7/chemfp/futures copying chemfp/futures/process.py -> build/lib.linux-armv7l-2.7/chemfp/futures copying chemfp/futures/thread.py -> build/lib.linux-armv7l-2.7/chemfp/futures copying chemfp/futures/__init__.py -> build/lib.linux-armv7l-2.7/chemfp/futures copying chemfp/futures/_base.py -> build/lib.linux-armv7l-2.7/chemfp/futures copying chemfp/futures/_compat.py -> build/lib.linux-armv7l-2.7/chemfp/futures creating build/lib.linux-armv7l-2.7/chemfp/progressbar copying chemfp/progressbar/widgets.py -> build/lib.linux-armv7l-2.7/chemfp/progressbar copying chemfp/progressbar/compat.py -> build/lib.linux-armv7l-2.7/chemfp/progressbar copying chemfp/progressbar/__init__.py -> build/lib.linux-armv7l-2.7/chemfp/progressbar copying chemfp/rdmaccs.patterns -> build/lib.linux-armv7l-2.7/chemfp copying chemfp/substruct.patterns -> build/lib.linux-armv7l-2.7/chemfp running build_ext building '_chemfp' extension creating build/temp.linux-armv7l-2.7 creating build/temp.linux-armv7l-2.7/src arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/bitops.c -o build/temp.linux-armv7l-2.7/src/bitops.o -fopenmp -O3 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/chemfp.c -o build/temp.linux-armv7l-2.7/src/chemfp.o -fopenmp -O3 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/heapq.c -o build/temp.linux-armv7l-2.7/src/heapq.o -fopenmp -O3 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/fps.c -o build/temp.linux-armv7l-2.7/src/fps.o -fopenmp -O3 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/searches.c -o build/temp.linux-armv7l-2.7/src/searches.o -fopenmp -O3 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/hits.c -o build/temp.linux-armv7l-2.7/src/hits.o -fopenmp -O3 src/hits.c: In function 'binary_insertion_find': src/hits.c:113:24: warning: variable 'rx2' set but not used [-Wunused-but-set-variable] SORT_TYPE2 lx2, cx2, rx2; ^~~ src/hits.c:112:24: warning: variable 'rx1' set but not used [-Wunused-but-set-variable] SORT_TYPE1 lx1, cx1, rx1; ^~~ src/hits.c: In function 'tim_sort_resize': src/hits.c:323:80: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=] fprintf(stderr, "Error allocating temporary storage for tim sort: need %lu bytes", sizeof(SORT_TYPE1) * new_size); ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %u src/hits.c:328:80: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=] fprintf(stderr, "Error allocating temporary storage for tim sort: need %lu bytes", sizeof(SORT_TYPE2) * new_size); ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %u arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/select_popcount.c -o build/temp.linux-armv7l-2.7/src/select_popcount.o -fopenmp -O3 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/popcount_popcnt.c -o build/temp.linux-armv7l-2.7/src/popcount_popcnt.o -fopenmp -O3 src/popcount_popcnt.c: In function 'chemfp_popcount_popcnt': src/popcount_popcnt.c:68:7: warning: variable 'i' set but not used [-Wunused-but-set-variable] int i; ^ src/popcount_popcnt.c: In function 'chemfp_intersect_popcount_popcnt': src/popcount_popcnt.c:94:7: warning: variable 'i' set but not used [-Wunused-but-set-variable] int i; ^ arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/popcount_lauradoux.c -o build/temp.linux-armv7l-2.7/src/popcount_lauradoux.o -fopenmp -O3 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/popcount_lut.c -o build/temp.linux-armv7l-2.7/src/popcount_lut.o -fopenmp -O3 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/popcount_gillies.c -o build/temp.linux-armv7l-2.7/src/popcount_gillies.o -fopenmp -O3 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/popcount_SSSE3.c -o build/temp.linux-armv7l-2.7/src/popcount_SSSE3.o -fopenmp -O3 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/python_api.c -o build/temp.linux-armv7l-2.7/src/python_api.o -fopenmp -O3 arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c src/pysearch_results.c -o build/temp.linux-armv7l-2.7/src/pysearch_results.o -fopenmp -O3 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-RT6aMn/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/chemfp-1.1p1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-2.7/src/bitops.o build/temp.linux-armv7l-2.7/src/chemfp.o build/temp.linux-armv7l-2.7/src/heapq.o build/temp.linux-armv7l-2.7/src/fps.o build/temp.linux-armv7l-2.7/src/searches.o build/temp.linux-armv7l-2.7/src/hits.o build/temp.linux-armv7l-2.7/src/select_popcount.o build/temp.linux-armv7l-2.7/src/popcount_popcnt.o build/temp.linux-armv7l-2.7/src/popcount_lauradoux.o build/temp.linux-armv7l-2.7/src/popcount_lut.o build/temp.linux-armv7l-2.7/src/popcount_gillies.o build/temp.linux-armv7l-2.7/src/popcount_SSSE3.o build/temp.linux-armv7l-2.7/src/python_api.o build/temp.linux-armv7l-2.7/src/pysearch_results.o -o build/lib.linux-armv7l-2.7/_chemfp.so -fopenmp -O3 running build_scripts creating build/scripts-2.7 copying and adjusting ob2fps -> build/scripts-2.7 copying and adjusting oe2fps -> build/scripts-2.7 copying and adjusting rdkit2fps -> build/scripts-2.7 copying and adjusting sdf2fps -> build/scripts-2.7 copying and adjusting simsearch -> build/scripts-2.7 changing mode of build/scripts-2.7/ob2fps from 664 to 775 changing mode of build/scripts-2.7/oe2fps from 664 to 775 changing mode of build/scripts-2.7/rdkit2fps from 664 to 775 changing mode of build/scripts-2.7/sdf2fps from 664 to 775 changing mode of build/scripts-2.7/simsearch from 664 to 775 make[1]: Leaving directory '/build/chemfp-1.1p1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/chemfp-1.1p1' for PY in 2.7; do \ py_path="/build/chemfp-1.1p1/build/lib.`python${PY} -c 'from distutils import util; print util.get_platform();'`-$PY/" ; \ (cd tests; PYTHONPATH=$py_path python$PY unit2 discover); \ done .......ss..................................................s..............................................................ssssssss...ssssssssssss..................................................................................................................ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss............................................................................................................................................................................................................................................................ssssssssssssssssssss...[23:16:18] WARNING: not removing hydrogen atom without neighbors .[23:16:18] WARNING: not removing hydrogen atom without neighbors [23:16:18] WARNING: not removing hydrogen atom without neighbors [23:16:18] WARNING: not removing hydrogen atom without neighbors .[23:16:18] WARNING: not removing hydrogen atom without neighbors [23:16:18] WARNING: not removing hydrogen atom without neighbors [23:16:18] WARNING: not removing hydrogen atom without neighbors .[23:16:18] WARNING: not removing hydrogen atom without neighbors ........................................................................................................................................................[23:16:27] SMILES Parse Error: syntax error for input: 'Q' ..[23:16:27] WARNING: not removing hydrogen atom without neighbors [23:16:27] Atom line too short: ' 28 1 1 0 0 0' on line 37 [23:16:27] WARNING: not removing hydrogen atom without neighbors .[23:16:27] WARNING: not removing hydrogen atom without neighbors [23:16:27] Atom line too short: ' 28 1 1 0 0 0' on line 37 .[23:16:27] WARNING: not removing hydrogen atom without neighbors [23:16:27] Atom line too short: ' 28 1 1 0 0 0' on line 37 .[23:16:27] WARNING: not removing hydrogen atom without neighbors ....[23:16:27] WARNING: not removing hydrogen atom without neighbors [23:16:27] WARNING: not removing hydrogen atom without neighbors [23:16:27] WARNING: not removing hydrogen atom without neighbors .[23:16:27] WARNING: not removing hydrogen atom without neighbors [23:16:27] WARNING: not removing hydrogen atom without neighbors [23:16:27] WARNING: not removing hydrogen atom without neighbors .[23:16:27] WARNING: not removing hydrogen atom without neighbors [23:16:27] WARNING: not removing hydrogen atom without neighbors [23:16:27] WARNING: not removing hydrogen atom without neighbors .[23:16:27] WARNING: not removing hydrogen atom without neighbors [23:16:27] WARNING: not removing hydrogen atom without neighbors [23:16:27] WARNING: not removing hydrogen atom without neighbors .....[23:16:29] WARNING: not removing hydrogen atom without neighbors .[23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors .[23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors .[23:16:29] WARNING: not removing hydrogen atom without neighbors .[23:16:29] WARNING: not removing hydrogen atom without neighbors .[23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors .[23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors .[23:16:29] WARNING: not removing hydrogen atom without neighbors .F[23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors .[23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors .[23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors .[23:16:29] WARNING: not removing hydrogen atom without neighbors [23:16:29] WARNING: not removing hydrogen atom without neighbors ...........F.F.F.F.F.....F................................ss....s.....s..........F.............. ====================================================================== FAIL: test_output (test_rdkit2fps.TestIO) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/chemfp-1.1p1/tests/test_rdkit2fps.py", line 388, in test_output self.assertEquals(result[0], _fp1 + "\t9425004\n") AssertionError: '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\t9425004\n' != '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\t9425004\n' ====================================================================== FAIL: test_as_rdk (test_rdkit2fps.TestRDKFingerprints) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/chemfp-1.1p1/tests/test_rdkit2fps.py", line 83, in test_as_rdk self.assertEquals(result[0], _fp1 + "\t9425004") AssertionError: '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\t9425004' != '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\t9425004' ====================================================================== FAIL: test_bits_per_hash_default (test_rdkit2fps.TestRDKFingerprints) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/chemfp-1.1p1/tests/test_rdkit2fps.py", line 116, in test_bits_per_hash_default self.assertEquals(first.split()[0], _fp1) AssertionError: '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' != '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' ====================================================================== FAIL: test_is_default (test_rdkit2fps.TestRDKFingerprints) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/chemfp-1.1p1/tests/test_rdkit2fps.py", line 76, in test_is_default self.assertEquals(result[0], _fp1 + "\t9425004") AssertionError: '3d82d0c7843d24ab7d7cb6c2b323b5bbd8b3a32e5ac7b467b7ca5d7d8bc00a5cfd72d6faf127179bae9f5d1a6c97eefa28cdbdcdfdb98a46fdc9e5dbc2fb9543b6cdd30e53e3defdfdc4e7d3cc52effaf333f11395b9759b8f4c36df6c45119cf28eba819cf3ff7f97deceec3312dd90fecf14f1675e765489e89a5e7e3dbb6fddd7add35f8f7a2ebfd1572b7f5bdd995bdd5e573d6cc9a2a8094b8b3761cc04e80ca11d01376d56728fe48f8f6b368fdfd7b8187e2e6fba5d1f2cf16e8df1f1e3f6f2f6f71733f1572abb00cec90fabde5a3dc9bc84cf7c5324bfcf7db66a2b75d7e2f33f53d172ea4f5713bfd5f81f73d3ed6d171188fd496cce64bbf875ad\t9425004' != '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\t9425004' ====================================================================== FAIL: test_max_path_default (test_rdkit2fps.TestRDKFingerprints) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/chemfp-1.1p1/tests/test_rdkit2fps.py", line 152, in test_max_path_default self.assertEquals(first.split()[0], _fp1) AssertionError: '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' != '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' ====================================================================== FAIL: test_min_path_default (test_rdkit2fps.TestRDKFingerprints) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/chemfp-1.1p1/tests/test_rdkit2fps.py", line 132, in test_min_path_default self.assertEquals(first.split()[0], _fp1) AssertionError: '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' != '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' ====================================================================== FAIL: test_num_bits_default (test_rdkit2fps.TestRDKFingerprints) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/chemfp-1.1p1/tests/test_rdkit2fps.py", line 90, in test_num_bits_default self.assertEquals(result[0], _fp1 + "\t9425004") AssertionError: '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\t9425004' != '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\t9425004' ====================================================================== FAIL: test_select_fastest (test_methods.TestSelectFastestMethod) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/chemfp-1.1p1/tests/test_methods.py", line 237, in test_select_fastest self.assertEquals(best_methods1, best_methods2) # This might fail if two methods have nearly identical timings AssertionError: {'align1': 'LUT8-1', 'align8-small': 'LUT8-4', 'align8-large': 'Lauradoux', 'ali [truncated]... != {'align1': 'LUT8-1', 'align8-small': 'LUT8-1', 'align8-large': 'LUT8-4', 'align- [truncated]... {'align-ssse3': 'Gillies', 'align1': 'LUT8-1', 'align4': 'LUT16-4', - 'align8-large': 'Lauradoux', ? ^^^^^^^^ + 'align8-large': 'LUT8-4', ? ^^^^^ - 'align8-small': 'LUT8-4'} ? ^ + 'align8-small': 'LUT8-1'} ? ^ ---------------------------------------------------------------------- Ran 896 tests in 94.676s FAILED (failures=8, skipped=129) make[1]: [debian/rules:26: override_dh_auto_test] Error 1 (ignored) make[1]: Leaving directory '/build/chemfp-1.1p1' fakeroot debian/rules binary dh binary --with python2 --parallel dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_testroot -O--parallel dh_prep -O--parallel dh_auto_install -O--parallel dh_auto_install: Compatibility levels before 9 are deprecated (level 7 in use) dh_auto_install: Please use the third-party "pybuild" build system instead of python-distutils dh_auto_install: This feature will be removed in compat 12. pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions pyversions: missing debian/pyversions file, fall back to supported versions python setup.py install --force --root=/build/chemfp-1.1p1/debian/python-chemfp --no-compile -O0 --install-layout=deb running install running build running build_py running build_ext running build_scripts running install_lib creating /build/chemfp-1.1p1/debian/python-chemfp/usr creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7 creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages copying build/lib.linux-armv7l-2.7/_chemfp.so -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/rdkit.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/search.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/slow.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/ob2fps.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/rdkit2fps.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/rdkit2fps.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/fpsmerge.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/simsearch.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/ob2fps.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/sdf2fps.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/__init__.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/sdf2fps.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/simsearch.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/oe2fps.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/__init__.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/cmdsupport.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/commandline/cmdsupport.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/commandline copying build/lib.linux-armv7l-2.7/chemfp/openbabel.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/arena.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/openbabel_patterns.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/rdkit_patterns.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/openbabel_patterns.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/openeye.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/search.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/pattern_fingerprinter.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/error_handlers.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/rdmaccs.patterns -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/substruct.patterns -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/fps_search.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/sdf_reader.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/fps_io.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures copying build/lib.linux-armv7l-2.7/chemfp/futures/process.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures copying build/lib.linux-armv7l-2.7/chemfp/futures/thread.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures copying build/lib.linux-armv7l-2.7/chemfp/futures/__init__.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures copying build/lib.linux-armv7l-2.7/chemfp/futures/_base.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures copying build/lib.linux-armv7l-2.7/chemfp/futures/_compat.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/futures copying build/lib.linux-armv7l-2.7/chemfp/argparse.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/rdkit.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/__init__.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/sdf_reader.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/openeye_patterns.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/argparse.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/io.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/arena.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/types.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/decoders.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/openbabel.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp creating /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/progressbar copying build/lib.linux-armv7l-2.7/chemfp/progressbar/widgets.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/progressbar copying build/lib.linux-armv7l-2.7/chemfp/progressbar/compat.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/progressbar copying build/lib.linux-armv7l-2.7/chemfp/progressbar/__init__.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp/progressbar copying build/lib.linux-armv7l-2.7/chemfp/pattern_fingerprinter.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/Watcher.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/openeye.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/fps_io.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/slow.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/__init__.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/bitops.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/fps_search.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/bitops.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/encodings.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/io.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/error_handlers.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/encodings.pyc -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp copying build/lib.linux-armv7l-2.7/chemfp/types.py -> /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp running install_scripts creating /build/chemfp-1.1p1/debian/python-chemfp/usr/bin copying build/scripts-2.7/sdf2fps -> /build/chemfp-1.1p1/debian/python-chemfp/usr/bin copying build/scripts-2.7/rdkit2fps -> /build/chemfp-1.1p1/debian/python-chemfp/usr/bin copying build/scripts-2.7/simsearch -> /build/chemfp-1.1p1/debian/python-chemfp/usr/bin copying build/scripts-2.7/oe2fps -> /build/chemfp-1.1p1/debian/python-chemfp/usr/bin copying build/scripts-2.7/ob2fps -> /build/chemfp-1.1p1/debian/python-chemfp/usr/bin changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/sdf2fps to 775 changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/rdkit2fps to 775 changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/simsearch to 775 changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/oe2fps to 775 changing mode of /build/chemfp-1.1p1/debian/python-chemfp/usr/bin/ob2fps to 775 running install_egg_info Writing /build/chemfp-1.1p1/debian/python-chemfp/usr/lib/python2.7/dist-packages/chemfp-1.1p1.egg-info dh_installdocs -O--parallel dh_installdocs: Compatibility levels before 9 are deprecated (level 7 in use) dh_installchangelogs -O--parallel dh_installchangelogs: Compatibility levels before 9 are deprecated (level 7 in use) dh_installman -O--parallel dh_installman: Compatibility levels before 9 are deprecated (level 7 in use) dh_python2 -O--parallel W: dh_python2:479: Please add dh-python package to Build-Depends dh_installinit -O--parallel dh_installinit: Compatibility levels before 9 are deprecated (level 7 in use) dh_perl -O--parallel dh_link -O--parallel dh_strip_nondeterminism -O--parallel dh_compress -O--parallel dh_compress: Compatibility levels before 9 are deprecated (level 7 in use) dh_fixperms -O--parallel dh_missing -O--parallel dh_missing: Compatibility levels before 9 are deprecated (level 7 in use) dh_strip -O--parallel dh_strip: Compatibility levels before 9 are deprecated (level 7 in use) dh_makeshlibs -O--parallel dh_makeshlibs: Compatibility levels before 9 are deprecated (level 7 in use) dh_shlibdeps -O--parallel dh_shlibdeps: Compatibility levels before 9 are deprecated (level 7 in use) dh_installdeb -O--parallel dh_installdeb: Compatibility levels before 9 are deprecated (level 7 in use) dh_gencontrol -O--parallel dpkg-gencontrol: warning: package python-chemfp: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python-chemfp: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--parallel dh_builddeb -O--parallel dpkg-deb: building package 'python-chemfp-dbgsym' in '../python-chemfp-dbgsym_1.1p1-2.1_armhf.deb'. dpkg-deb: building package 'python-chemfp' in '../python-chemfp_1.1p1-2.1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../chemfp_1.1p1-2.1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/13545/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/13545/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/13545 and its subdirectories I: Current time: Tue Oct 6 23:18:17 +14 2020 I: pbuilder-time-stamp: 1601975897