I: pbuilder: network access will be disabled during build I: Current time: Sun May 31 12:01:04 +14 2020 I: pbuilder-time-stamp: 1590876064 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cain_1.10+dfsg-3.dsc] I: copying [./cain_1.10+dfsg.orig.tar.xz] I: copying [./cain_1.10+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Jul 14 05:19:24 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cain_1.10+dfsg-3.dsc dpkg-source: info: extracting cain in cain-1.10+dfsg dpkg-source: info: unpacking cain_1.10+dfsg.orig.tar.xz dpkg-source: info: unpacking cain_1.10+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cain.patch dpkg-source: info: applying eigen3.patch dpkg-source: info: applying gcc-4.7.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying help.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/30594/tmp/hooks/D01_modify_environment starting debug: Running on cb3a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/30594/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/30594/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=2' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=ee2252ecd8914a9282b803d26a7bc531 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=30594 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.PnlG52eht9/pbuilderrc_Zkoz --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.PnlG52eht9/b2 --logfile b2/build.log cain_1.10+dfsg-3.dsc' SUDO_GID=115 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:8000/ I: uname -a Linux i-capture-the-hostname 4.19.0-9-armmp-lpae #1 SMP Debian 4.19.118-2 (2020-04-29) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash -rwxr-xr-x 1 root root 71648 Mar 1 2019 date -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd -rwxr-xr-x 1 root root 55672 Mar 1 2019 df -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 18260 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 23 09:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln -rwxr-xr-x 1 root root 34932 Jul 27 2018 login -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 10 2019 more -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 May 31 12:03 sh -> bash lrwxrwxrwx 1 root root 4 May 30 22:30 sh.distrib -> dash -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty -rwsr-xr-x 1 root root 42472 Jan 10 2019 su -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch -rwxr-xr-x 1 root root 18260 Mar 1 2019 true -rwxr-xr-x 1 root root 9636 Apr 23 09:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/30594/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), python-all-dev, python (<< 3.0), libeigen3-dev, zip dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on python-all-dev; however: Package python-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python (<< 3.0); however: Package python is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on zip; however: Package zip is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libeigen3-dev{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} pkg-config{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-dev{a} python-minimal{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} readline-common{a} sensible-utils{a} zip{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info unzip wget xdg-user-dirs 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 57.2 MB of archives. After unpacking 138 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf libpython2.7-minimal armhf 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main armhf python2.7-minimal armhf 2.7.16-2+deb10u1 [1171 kB] Get: 9 http://deb.debian.org/debian buster/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main armhf python-minimal armhf 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB] Get: 12 http://deb.debian.org/debian buster/main armhf mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 14 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB] Get: 16 http://deb.debian.org/debian buster/main armhf libpython2.7-stdlib armhf 2.7.16-2+deb10u1 [1837 kB] Get: 17 http://deb.debian.org/debian buster/main armhf python2.7 armhf 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main armhf python2 armhf 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main armhf python armhf 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 24 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 25 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 26 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 28 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 29 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 30 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 31 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 32 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 33 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 34 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 35 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 36 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 37 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 38 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 39 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 40 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 44 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 45 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 46 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 48 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 49 http://deb.debian.org/debian buster/main armhf pkg-config armhf 0.29-6 [60.7 kB] Get: 50 http://deb.debian.org/debian buster/main armhf libeigen3-dev all 3.3.7-1 [850 kB] Get: 51 http://deb.debian.org/debian buster/main armhf libexpat1-dev armhf 2.2.6-2+deb10u1 [126 kB] Get: 52 http://deb.debian.org/debian buster/main armhf libpython2.7 armhf 2.7.16-2+deb10u1 [892 kB] Get: 53 http://deb.debian.org/debian buster/main armhf libpython2.7-dev armhf 2.7.16-2+deb10u1 [31.0 MB] Get: 54 http://deb.debian.org/debian buster/main armhf libpython2-dev armhf 2.7.16-1 [20.9 kB] Get: 55 http://deb.debian.org/debian buster/main armhf libpython-dev armhf 2.7.16-1 [20.9 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libpython-all-dev armhf 2.7.16-1 [1064 B] Get: 57 http://deb.debian.org/debian buster/main armhf python-all armhf 2.7.16-1 [1044 B] Get: 58 http://deb.debian.org/debian buster/main armhf python2.7-dev armhf 2.7.16-2+deb10u1 [291 kB] Get: 59 http://deb.debian.org/debian buster/main armhf python2-dev armhf 2.7.16-1 [1216 B] Get: 60 http://deb.debian.org/debian buster/main armhf python-dev armhf 2.7.16-1 [1192 B] Get: 61 http://deb.debian.org/debian buster/main armhf python-all-dev armhf 2.7.16-1 [1068 B] Get: 62 http://deb.debian.org/debian buster/main armhf zip armhf 3.0-11+b1 [228 kB] Fetched 57.2 MB in 45s (1277 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:armhf. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_armhf.deb ... Unpacking libpython2.7-minimal:armhf (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_armhf.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_armhf.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_armhf.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:armhf. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_armhf.deb ... Unpacking libssl1.1:armhf (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_armhf.deb ... Unpacking libexpat1:armhf (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:armhf. 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Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20397 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_armhf.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libeigen3-dev (3.3.7-1) ... Setting up libcroco3:armhf (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython2.7:armhf (2.7.16-2+deb10u1) ... Setting up libpython2.7-dev:armhf (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:armhf (2.7.16-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:armhf (2.7.16-1) ... Setting up libpython2-dev:armhf (2.7.16-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python2-dev (2.7.16-1) ... Setting up po-debconf (1.0.21) ... Setting up python-all (2.7.16-1) ... Setting up libpython-dev:armhf (2.7.16-1) ... Setting up python-dev (2.7.16-1) ... Setting up libpython-all-dev:armhf (2.7.16-1) ... Setting up python-all-dev (2.7.16-1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/cain-1.10+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package cain dpkg-buildpackage: info: source version 1.10+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with python2 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/cain-1.10+dfsg' dh_auto_clean make -j2 distclean make[2]: Entering directory '/build/cain-1.10+dfsg' rm -f *~ *.pyc */*.pyc rm -rf Cain rm -f Cain.app/Contents/Resources/Cain.py rm -rf Cain.app/Contents/Resources/gui rm -rf Cain.app/Contents/Resources/fio rm -rf Cain.app/Contents/Resources/simulation rm -rf Cain.app/Contents/Resources/solvers rm -rf Cain.app/Contents/Resources/state rm -f solvers/* rm -f src/solvers/*.d make[2]: Leaving directory '/build/cain-1.10+dfsg' rm -rf solvers make[1]: Leaving directory '/build/cain-1.10+dfsg' dh_clean debian/rules build dh build --with python2 dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/cain-1.10+dfsg' mkdir solvers dh_auto_build make -j2 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/cain-1.10+dfsg' make -C src/solvers make[3]: Entering directory '/build/cain-1.10+dfsg/src/solvers' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingVector.cc > HomogeneousNextReactionHashingVector.d.$$; \ sed 's,\(HomogeneousNextReactionHashingVector\)\.o[ :]*,\1.o HomogeneousNextReactionHashingVector.d : ,g' < HomogeneousNextReactionHashingVector.d.$$ > HomogeneousNextReactionHashingVector.d; \ rm -f HomogeneousNextReactionHashingVector.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapGibsonBruck.cc > HomogeneousNextReactionBinaryHeapGibsonBruck.d.$$; \ sed 's,\(HomogeneousNextReactionBinaryHeapGibsonBruck\)\.o[ :]*,\1.o HomogeneousNextReactionBinaryHeapGibsonBruck.d : ,g' < HomogeneousNextReactionBinaryHeapGibsonBruck.d.$$ > HomogeneousNextReactionBinaryHeapGibsonBruck.d; \ rm -f HomogeneousNextReactionBinaryHeapGibsonBruck.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsDirect2DSearch.cc > HomogeneousHistogramsDirect2DSearch.d.$$; \ sed 's,\(HomogeneousHistogramsDirect2DSearch\)\.o[ :]*,\1.o HomogeneousHistogramsDirect2DSearch.d : ,g' < HomogeneousHistogramsDirect2DSearch.d.$$ > HomogeneousHistogramsDirect2DSearch.d; \ rm -f HomogeneousHistogramsDirect2DSearch.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc > HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d.$$; \ sed 's,\(HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit\)\.o[ :]*,\1.o HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d : ,g' < HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d.$$ > HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d; \ rm -f HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearchSorted.cc > HomogeneousDirect2DSearchSorted.d.$$; \ sed 's,\(HomogeneousDirect2DSearchSorted\)\.o[ :]*,\1.o HomogeneousDirect2DSearchSorted.d : ,g' < HomogeneousDirect2DSearchSorted.d.$$ > HomogeneousDirect2DSearchSorted.d; \ rm -f HomogeneousDirect2DSearchSorted.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingMidpoint.cc > HomogeneousTauLeapingMidpoint.d.$$; \ sed 's,\(HomogeneousTauLeapingMidpoint\)\.o[ :]*,\1.o HomogeneousTauLeapingMidpoint.d : ,g' < HomogeneousTauLeapingMidpoint.d.$$ > HomogeneousTauLeapingMidpoint.d; \ rm -f HomogeneousTauLeapingMidpoint.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapPointer.cc > HomogeneousNextReactionBinaryHeapPointer.d.$$; \ sed 's,\(HomogeneousNextReactionBinaryHeapPointer\)\.o[ :]*,\1.o HomogeneousNextReactionBinaryHeapPointer.d : ,g' < HomogeneousNextReactionBinaryHeapPointer.d.$$ > HomogeneousNextReactionBinaryHeapPointer.d; \ rm -f HomogeneousNextReactionBinaryHeapPointer.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeExponentialLast.cc > HomogeneousHistogramsTransientDirectTreeExponentialLast.d.$$; \ sed 's,\(HomogeneousHistogramsTransientDirectTreeExponentialLast\)\.o[ :]*,\1.o HomogeneousHistogramsTransientDirectTreeExponentialLast.d : ,g' < HomogeneousHistogramsTransientDirectTreeExponentialLast.d.$$ > HomogeneousHistogramsTransientDirectTreeExponentialLast.d; \ rm -f HomogeneousHistogramsTransientDirectTreeExponentialLast.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingSalFixedLinear.cc > HomogeneousTauLeapingSalFixedLinear.d.$$; \ sed 's,\(HomogeneousTauLeapingSalFixedLinear\)\.o[ :]*,\1.o HomogeneousTauLeapingSalFixedLinear.d : ,g' < HomogeneousTauLeapingSalFixedLinear.d.$$ > HomogeneousTauLeapingSalFixedLinear.d; \ rm -f HomogeneousTauLeapingSalFixedLinear.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHybridDirectTauLeapingMidpoint.cc > HomogeneousHybridDirectTauLeapingMidpoint.d.$$; \ sed 's,\(HomogeneousHybridDirectTauLeapingMidpoint\)\.o[ :]*,\1.o HomogeneousHybridDirectTauLeapingMidpoint.d : ,g' < HomogeneousHybridDirectTauLeapingMidpoint.d.$$ > HomogeneousHybridDirectTauLeapingMidpoint.d; \ rm -f HomogeneousHybridDirectTauLeapingMidpoint.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectAllReactions2DSearch.cc > HomogeneousDirectAllReactions2DSearch.d.$$; \ sed 's,\(HomogeneousDirectAllReactions2DSearch\)\.o[ :]*,\1.o HomogeneousDirectAllReactions2DSearch.d : ,g' < HomogeneousDirectAllReactions2DSearch.d.$$ > HomogeneousDirectAllReactions2DSearch.d; \ rm -f HomogeneousDirectAllReactions2DSearch.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedForward.cc > HomogeneousTauLeapingFixedForward.d.$$; \ sed 's,\(HomogeneousTauLeapingFixedForward\)\.o[ :]*,\1.o HomogeneousTauLeapingFixedForward.d : ,g' < HomogeneousTauLeapingFixedForward.d.$$ > HomogeneousTauLeapingFixedForward.d; \ rm -f HomogeneousTauLeapingFixedForward.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingForward.cc > HomogeneousTauLeapingForward.d.$$; \ sed 's,\(HomogeneousTauLeapingForward\)\.o[ :]*,\1.o HomogeneousTauLeapingForward.d : ,g' < HomogeneousTauLeapingForward.d.$$ > HomogeneousTauLeapingForward.d; \ rm -f HomogeneousTauLeapingForward.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchBubbleSort.cc > HomogeneousDirectLinearSearchBubbleSort.d.$$; \ sed 's,\(HomogeneousDirectLinearSearchBubbleSort\)\.o[ :]*,\1.o HomogeneousDirectLinearSearchBubbleSort.d : ,g' < HomogeneousDirectLinearSearchBubbleSort.d.$$ > HomogeneousDirectLinearSearchBubbleSort.d; \ rm -f HomogeneousDirectLinearSearchBubbleSort.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearchPointer.cc > HomogeneousNextReactionLinearSearchPointer.d.$$; \ sed 's,\(HomogeneousNextReactionLinearSearchPointer\)\.o[ :]*,\1.o HomogeneousNextReactionLinearSearchPointer.d : ,g' < HomogeneousNextReactionLinearSearchPointer.d.$$ > HomogeneousNextReactionLinearSearchPointer.d; \ rm -f HomogeneousNextReactionLinearSearchPointer.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingMidpointNoCorrection.cc > HomogeneousTauLeapingMidpointNoCorrection.d.$$; \ sed 's,\(HomogeneousTauLeapingMidpointNoCorrection\)\.o[ :]*,\1.o HomogeneousTauLeapingMidpointNoCorrection.d : ,g' < HomogeneousTauLeapingMidpointNoCorrection.d.$$ > HomogeneousTauLeapingMidpointNoCorrection.d; \ rm -f HomogeneousTauLeapingMidpointNoCorrection.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedMidpoint.cc > HomogeneousTauLeapingFixedMidpoint.d.$$; \ sed 's,\(HomogeneousTauLeapingFixedMidpoint\)\.o[ :]*,\1.o HomogeneousTauLeapingFixedMidpoint.d : ,g' < HomogeneousTauLeapingFixedMidpoint.d.$$ > HomogeneousTauLeapingFixedMidpoint.d; \ rm -f HomogeneousTauLeapingFixedMidpoint.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionSizeAdaptive.cc > HomogeneousNextReactionPartitionSizeAdaptive.d.$$; \ sed 's,\(HomogeneousNextReactionPartitionSizeAdaptive\)\.o[ :]*,\1.o HomogeneousNextReactionPartitionSizeAdaptive.d : ,g' < HomogeneousNextReactionPartitionSizeAdaptive.d.$$ > HomogeneousNextReactionPartitionSizeAdaptive.d; \ rm -f HomogeneousNextReactionPartitionSizeAdaptive.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectCompositionRejection.cc > HomogeneousDirectCompositionRejection.d.$$; \ sed 's,\(HomogeneousDirectCompositionRejection\)\.o[ :]*,\1.o HomogeneousDirectCompositionRejection.d : ,g' < HomogeneousDirectCompositionRejection.d.$$ > HomogeneousDirectCompositionRejection.d; \ rm -f HomogeneousDirectCompositionRejection.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedRungeKutta4.cc > HomogeneousOdeReactionFixedRungeKutta4.d.$$; \ sed 's,\(HomogeneousOdeReactionFixedRungeKutta4\)\.o[ :]*,\1.o HomogeneousOdeReactionFixedRungeKutta4.d : ,g' < HomogeneousOdeReactionFixedRungeKutta4.d.$$ > HomogeneousOdeReactionFixedRungeKutta4.d; \ rm -f HomogeneousOdeReactionFixedRungeKutta4.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsDirectTree.cc > HomogeneousHistogramsDirectTree.d.$$; \ sed 's,\(HomogeneousHistogramsDirectTree\)\.o[ :]*,\1.o HomogeneousHistogramsDirectTree.d : ,g' < HomogeneousHistogramsDirectTree.d.$$ > HomogeneousHistogramsDirectTree.d; \ rm -f HomogeneousHistogramsDirectTree.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionRungeKuttaCashKarp.cc > HomogeneousOdeReactionRungeKuttaCashKarp.d.$$; \ sed 's,\(HomogeneousOdeReactionRungeKuttaCashKarp\)\.o[ :]*,\1.o HomogeneousOdeReactionRungeKuttaCashKarp.d : ,g' < HomogeneousOdeReactionRungeKuttaCashKarp.d.$$ > HomogeneousOdeReactionRungeKuttaCashKarp.d; \ rm -f HomogeneousOdeReactionRungeKuttaCashKarp.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverage.cc > HomogeneousHistogramsAverage.d.$$; \ sed 's,\(HomogeneousHistogramsAverage\)\.o[ :]*,\1.o HomogeneousHistogramsAverage.d : ,g' < HomogeneousHistogramsAverage.d.$$ > HomogeneousHistogramsAverage.d; \ rm -f HomogeneousHistogramsAverage.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingSalLinear.cc > HomogeneousTauLeapingSalLinear.d.$$; \ sed 's,\(HomogeneousTauLeapingSalLinear\)\.o[ :]*,\1.o HomogeneousTauLeapingSalLinear.d : ,g' < HomogeneousTauLeapingSalLinear.d.$$ > HomogeneousTauLeapingSalLinear.d; \ rm -f HomogeneousTauLeapingSalLinear.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc > HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d.$$; \ sed 's,\(HomogeneousHistogramFinalHypoexponentialDirect2DSearch\)\.o[ :]*,\1.o HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d : ,g' < HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d.$$ > HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d; \ rm -f HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearch.cc > HomogeneousDirectBinarySearch.d.$$; \ sed 's,\(HomogeneousDirectBinarySearch\)\.o[ :]*,\1.o HomogeneousDirectBinarySearch.d : ,g' < HomogeneousDirectBinarySearch.d.$$ > HomogeneousDirectBinarySearch.d; \ rm -f HomogeneousDirectBinarySearch.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousFirstReactionInfluence.cc > HomogeneousFirstReactionInfluence.d.$$; \ sed 's,\(HomogeneousFirstReactionInfluence\)\.o[ :]*,\1.o HomogeneousFirstReactionInfluence.d : ,g' < HomogeneousFirstReactionInfluence.d.$$ > HomogeneousFirstReactionInfluence.d; \ rm -f HomogeneousFirstReactionInfluence.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingGenericVector.cc > HomogeneousNextReactionHashingGenericVector.d.$$; \ sed 's,\(HomogeneousNextReactionHashingGenericVector\)\.o[ :]*,\1.o HomogeneousNextReactionHashingGenericVector.d : ,g' < HomogeneousNextReactionHashingGenericVector.d.$$ > HomogeneousNextReactionHashingGenericVector.d; \ rm -f HomogeneousNextReactionHashingGenericVector.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverageAps.cc > HomogeneousHistogramsAverageAps.d.$$; \ sed 's,\(HomogeneousHistogramsAverageAps\)\.o[ :]*,\1.o HomogeneousHistogramsAverageAps.d : ,g' < HomogeneousHistogramsAverageAps.d.$$ > HomogeneousHistogramsAverageAps.d; \ rm -f HomogeneousHistogramsAverageAps.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearch.cc > HomogeneousNextReactionLinearSearch.d.$$; \ sed 's,\(HomogeneousNextReactionLinearSearch\)\.o[ :]*,\1.o HomogeneousNextReactionLinearSearch.d : ,g' < HomogeneousNextReactionLinearSearch.d.$$ > HomogeneousNextReactionLinearSearch.d; \ rm -f HomogeneousNextReactionLinearSearch.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearchBubbleSort.cc > HomogeneousDirect2DSearchBubbleSort.d.$$; \ sed 's,\(HomogeneousDirect2DSearchBubbleSort\)\.o[ :]*,\1.o HomogeneousDirect2DSearchBubbleSort.d : ,g' < HomogeneousDirect2DSearchBubbleSort.d.$$ > HomogeneousDirect2DSearchBubbleSort.d; \ rm -f HomogeneousDirect2DSearchBubbleSort.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchSorted.cc > HomogeneousDirectLinearSearchSorted.d.$$; \ sed 's,\(HomogeneousDirectLinearSearchSorted\)\.o[ :]*,\1.o HomogeneousDirectLinearSearchSorted.d : ,g' < HomogeneousDirectLinearSearchSorted.d.$$ > HomogeneousDirectLinearSearchSorted.d; \ rm -f HomogeneousDirectLinearSearchSorted.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsMultiTimeDirect2DSearch.cc > HomogeneousHistogramsMultiTimeDirect2DSearch.d.$$; \ sed 's,\(HomogeneousHistogramsMultiTimeDirect2DSearch\)\.o[ :]*,\1.o HomogeneousHistogramsMultiTimeDirect2DSearch.d : ,g' < HomogeneousHistogramsMultiTimeDirect2DSearch.d.$$ > HomogeneousHistogramsMultiTimeDirect2DSearch.d; \ rm -f HomogeneousHistogramsMultiTimeDirect2DSearch.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousFirstReaction.cc > HomogeneousFirstReaction.d.$$; \ sed 's,\(HomogeneousFirstReaction\)\.o[ :]*,\1.o HomogeneousFirstReaction.d : ,g' < HomogeneousFirstReaction.d.$$ > HomogeneousFirstReaction.d; \ rm -f HomogeneousFirstReaction.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearchUnrolled.cc > HomogeneousNextReactionLinearSearchUnrolled.d.$$; \ sed 's,\(HomogeneousNextReactionLinearSearchUnrolled\)\.o[ :]*,\1.o HomogeneousNextReactionLinearSearchUnrolled.d : ,g' < HomogeneousNextReactionLinearSearchUnrolled.d.$$ > HomogeneousNextReactionLinearSearchUnrolled.d; \ rm -f HomogeneousNextReactionLinearSearchUnrolled.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHybridDirectTauLeapingForward.cc > HomogeneousHybridDirectTauLeapingForward.d.$$; \ sed 's,\(HomogeneousHybridDirectTauLeapingForward\)\.o[ :]*,\1.o HomogeneousHybridDirectTauLeapingForward.d : ,g' < HomogeneousHybridDirectTauLeapingForward.d.$$ > HomogeneousHybridDirectTauLeapingForward.d; \ rm -f HomogeneousHybridDirectTauLeapingForward.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearch.cc > HomogeneousDirect2DSearch.d.$$; \ sed 's,\(HomogeneousDirect2DSearch\)\.o[ :]*,\1.o HomogeneousDirect2DSearch.d : ,g' < HomogeneousDirect2DSearch.d.$$ > HomogeneousDirect2DSearch.d; \ rm -f HomogeneousDirect2DSearch.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverageElapsedTime.cc > HomogeneousHistogramsAverageElapsedTime.d.$$; \ sed 's,\(HomogeneousHistogramsAverageElapsedTime\)\.o[ :]*,\1.o HomogeneousHistogramsAverageElapsedTime.d : ,g' < HomogeneousHistogramsAverageElapsedTime.d.$$ > HomogeneousHistogramsAverageElapsedTime.d; \ rm -f HomogeneousHistogramsAverageElapsedTime.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchDelayedUpdate.cc > HomogeneousDirectLinearSearchDelayedUpdate.d.$$; \ sed 's,\(HomogeneousDirectLinearSearchDelayedUpdate\)\.o[ :]*,\1.o HomogeneousDirectLinearSearchDelayedUpdate.d : ,g' < HomogeneousDirectLinearSearchDelayedUpdate.d.$$ > HomogeneousDirectLinearSearchDelayedUpdate.d; \ rm -f HomogeneousDirectLinearSearchDelayedUpdate.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTrajectoryTreeFull.cc > HomogeneousTrajectoryTreeFull.d.$$; \ sed 's,\(HomogeneousTrajectoryTreeFull\)\.o[ :]*,\1.o HomogeneousTrajectoryTreeFull.d : ,g' < HomogeneousTrajectoryTreeFull.d.$$ > HomogeneousTrajectoryTreeFull.d; \ rm -f HomogeneousTrajectoryTreeFull.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedRungeKuttaCashKarp.cc > HomogeneousOdeReactionFixedRungeKuttaCashKarp.d.$$; \ sed 's,\(HomogeneousOdeReactionFixedRungeKuttaCashKarp\)\.o[ :]*,\1.o HomogeneousOdeReactionFixedRungeKuttaCashKarp.d : ,g' < HomogeneousOdeReactionFixedRungeKuttaCashKarp.d.$$ > HomogeneousOdeReactionFixedRungeKuttaCashKarp.d; \ rm -f HomogeneousOdeReactionFixedRungeKuttaCashKarp.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectRejectionBinsSplitting.cc > HomogeneousDirectRejectionBinsSplitting.d.$$; \ sed 's,\(HomogeneousDirectRejectionBinsSplitting\)\.o[ :]*,\1.o HomogeneousDirectRejectionBinsSplitting.d : ,g' < HomogeneousDirectRejectionBinsSplitting.d.$$ > HomogeneousDirectRejectionBinsSplitting.d; \ rm -f HomogeneousDirectRejectionBinsSplitting.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionFixedSize.cc > HomogeneousNextReactionPartitionFixedSize.d.$$; \ sed 's,\(HomogeneousNextReactionPartitionFixedSize\)\.o[ :]*,\1.o HomogeneousNextReactionPartitionFixedSize.d : ,g' < HomogeneousNextReactionPartitionFixedSize.d.$$ > HomogeneousNextReactionPartitionFixedSize.d; \ rm -f HomogeneousNextReactionPartitionFixedSize.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingForwardNoCorrection.cc > HomogeneousTauLeapingForwardNoCorrection.d.$$; \ sed 's,\(HomogeneousTauLeapingForwardNoCorrection\)\.o[ :]*,\1.o HomogeneousTauLeapingForwardNoCorrection.d : ,g' < HomogeneousTauLeapingForwardNoCorrection.d.$$ > HomogeneousTauLeapingForwardNoCorrection.d; \ rm -f HomogeneousTauLeapingForwardNoCorrection.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearchRecursiveCdf.cc > HomogeneousDirectBinarySearchRecursiveCdf.d.$$; \ sed 's,\(HomogeneousDirectBinarySearchRecursiveCdf\)\.o[ :]*,\1.o HomogeneousDirectBinarySearchRecursiveCdf.d : ,g' < HomogeneousDirectBinarySearchRecursiveCdf.d.$$ > HomogeneousDirectBinarySearchRecursiveCdf.d; \ rm -f HomogeneousDirectBinarySearchRecursiveCdf.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingRungeKutta4.cc > HomogeneousTauLeapingRungeKutta4.d.$$; \ sed 's,\(HomogeneousTauLeapingRungeKutta4\)\.o[ :]*,\1.o HomogeneousTauLeapingRungeKutta4.d : ,g' < HomogeneousTauLeapingRungeKutta4.d.$$ > HomogeneousTauLeapingRungeKutta4.d; \ rm -f HomogeneousTauLeapingRungeKutta4.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearch.cc > HomogeneousDirectLinearSearch.d.$$; \ sed 's,\(HomogeneousDirectLinearSearch\)\.o[ :]*,\1.o HomogeneousDirectLinearSearch.d : ,g' < HomogeneousDirectLinearSearch.d.$$ > HomogeneousDirectLinearSearch.d; \ rm -f HomogeneousDirectLinearSearch.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapPair.cc > HomogeneousNextReactionBinaryHeapPair.d.$$; \ sed 's,\(HomogeneousNextReactionBinaryHeapPair\)\.o[ :]*,\1.o HomogeneousNextReactionBinaryHeapPair.d : ,g' < HomogeneousNextReactionBinaryHeapPair.d.$$ > HomogeneousNextReactionBinaryHeapPair.d; \ rm -f HomogeneousNextReactionBinaryHeapPair.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedRungeKutta4.cc > HomogeneousTauLeapingFixedRungeKutta4.d.$$; \ sed 's,\(HomogeneousTauLeapingFixedRungeKutta4\)\.o[ :]*,\1.o HomogeneousTauLeapingFixedRungeKutta4.d : ,g' < HomogeneousTauLeapingFixedRungeKutta4.d.$$ > HomogeneousTauLeapingFixedRungeKutta4.d; \ rm -f HomogeneousTauLeapingFixedRungeKutta4.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionCostAdaptive.cc > HomogeneousNextReactionPartitionCostAdaptive.d.$$; \ sed 's,\(HomogeneousNextReactionPartitionCostAdaptive\)\.o[ :]*,\1.o HomogeneousNextReactionPartitionCostAdaptive.d : ,g' < HomogeneousNextReactionPartitionCostAdaptive.d.$$ > HomogeneousNextReactionPartitionCostAdaptive.d; \ rm -f HomogeneousNextReactionPartitionCostAdaptive.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc > HomogeneousHistogramsTransientDirectTreeNormalApproximation.d.$$; \ sed 's,\(HomogeneousHistogramsTransientDirectTreeNormalApproximation\)\.o[ :]*,\1.o HomogeneousHistogramsTransientDirectTreeNormalApproximation.d : ,g' < HomogeneousHistogramsTransientDirectTreeNormalApproximation.d.$$ > HomogeneousHistogramsTransientDirectTreeNormalApproximation.d; \ rm -f HomogeneousHistogramsTransientDirectTreeNormalApproximation.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHybridDirectTauLeapingRungeKutta4.cc > HomogeneousHybridDirectTauLeapingRungeKutta4.d.$$; \ sed 's,\(HomogeneousHybridDirectTauLeapingRungeKutta4\)\.o[ :]*,\1.o HomogeneousHybridDirectTauLeapingRungeKutta4.d : ,g' < HomogeneousHybridDirectTauLeapingRungeKutta4.d.$$ > HomogeneousHybridDirectTauLeapingRungeKutta4.d; \ rm -f HomogeneousHybridDirectTauLeapingRungeKutta4.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionPropensities.cc > HomogeneousNextReactionPartitionPropensities.d.$$; \ sed 's,\(HomogeneousNextReactionPartitionPropensities\)\.o[ :]*,\1.o HomogeneousNextReactionPartitionPropensities.d : ,g' < HomogeneousNextReactionPartitionPropensities.d.$$ > HomogeneousNextReactionPartitionPropensities.d; \ rm -f HomogeneousNextReactionPartitionPropensities.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc > HomogeneousHistogramsTransientDirectTreeExponentialLimit.d.$$; \ sed 's,\(HomogeneousHistogramsTransientDirectTreeExponentialLimit\)\.o[ :]*,\1.o HomogeneousHistogramsTransientDirectTreeExponentialLimit.d : ,g' < HomogeneousHistogramsTransientDirectTreeExponentialLimit.d.$$ > HomogeneousHistogramsTransientDirectTreeExponentialLimit.d; \ rm -f HomogeneousHistogramsTransientDirectTreeExponentialLimit.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingRungeKutta4NoCorrection.cc > HomogeneousTauLeapingRungeKutta4NoCorrection.d.$$; \ sed 's,\(HomogeneousTauLeapingRungeKutta4NoCorrection\)\.o[ :]*,\1.o HomogeneousTauLeapingRungeKutta4NoCorrection.d : ,g' < HomogeneousTauLeapingRungeKutta4NoCorrection.d.$$ > HomogeneousTauLeapingRungeKutta4NoCorrection.d; \ rm -f HomogeneousTauLeapingRungeKutta4NoCorrection.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedMidpoint.cc > HomogeneousOdeReactionFixedMidpoint.d.$$; \ sed 's,\(HomogeneousOdeReactionFixedMidpoint\)\.o[ :]*,\1.o HomogeneousOdeReactionFixedMidpoint.d : ,g' < HomogeneousOdeReactionFixedMidpoint.d.$$ > HomogeneousOdeReactionFixedMidpoint.d; \ rm -f HomogeneousOdeReactionFixedMidpoint.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingGenericList.cc > HomogeneousNextReactionHashingGenericList.d.$$; \ sed 's,\(HomogeneousNextReactionHashingGenericList\)\.o[ :]*,\1.o HomogeneousNextReactionHashingGenericList.d : ,g' < HomogeneousNextReactionHashingGenericList.d.$$ > HomogeneousNextReactionHashingGenericList.d; \ rm -f HomogeneousNextReactionHashingGenericList.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearchSorted.cc > HomogeneousDirectBinarySearchSorted.d.$$; \ sed 's,\(HomogeneousDirectBinarySearchSorted\)\.o[ :]*,\1.o HomogeneousDirectBinarySearchSorted.d : ,g' < HomogeneousDirectBinarySearchSorted.d.$$ > HomogeneousDirectBinarySearchSorted.d; \ rm -f HomogeneousDirectBinarySearchSorted.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedForward.cc > HomogeneousOdeReactionFixedForward.d.$$; \ sed 's,\(HomogeneousOdeReactionFixedForward\)\.o[ :]*,\1.o HomogeneousOdeReactionFixedForward.d : ,g' < HomogeneousOdeReactionFixedForward.d.$$ > HomogeneousOdeReactionFixedForward.d; \ rm -f HomogeneousOdeReactionFixedForward.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousFirstReactionAbsoluteTime.cc > HomogeneousFirstReactionAbsoluteTime.d.$$; \ sed 's,\(HomogeneousFirstReactionAbsoluteTime\)\.o[ :]*,\1.o HomogeneousFirstReactionAbsoluteTime.d : ,g' < HomogeneousFirstReactionAbsoluteTime.d.$$ > HomogeneousFirstReactionAbsoluteTime.d; \ rm -f HomogeneousFirstReactionAbsoluteTime.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashing.cc > HomogeneousNextReactionHashing.d.$$; \ sed 's,\(HomogeneousNextReactionHashing\)\.o[ :]*,\1.o HomogeneousNextReactionHashing.d : ,g' < HomogeneousNextReactionHashing.d.$$ > HomogeneousNextReactionHashing.d; \ rm -f HomogeneousNextReactionHashing.d.$$ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -MM -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingImplicitFixedEuler.cc > HomogeneousTauLeapingImplicitFixedEuler.d.$$; \ sed 's,\(HomogeneousTauLeapingImplicitFixedEuler\)\.o[ :]*,\1.o HomogeneousTauLeapingImplicitFixedEuler.d : ,g' < HomogeneousTauLeapingImplicitFixedEuler.d.$$ > HomogeneousTauLeapingImplicitFixedEuler.d; \ rm -f HomogeneousTauLeapingImplicitFixedEuler.d.$$ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingImplicitFixedEuler.cc -lrt -o HomogeneousTauLeapingImplicitFixedEuler g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearchSorted.cc -lrt -o HomogeneousDirect2DSearchSorted In file included from HomogeneousDirect2DSearchSorted.cc:10: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, from HomogeneousDirect2DSearchSorted.cc:4: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueGreater>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirect2DSearchSorted.cc:10: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, from HomogeneousDirect2DSearchSorted.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirect2DSearchSorted.cc:10: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, from HomogeneousDirect2DSearchSorted.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirect2DSearchSorted.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, from HomogeneousDirect2DSearchSorted.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/TauLeapingImplicit.h:11, from HomogeneousTauLeapingImplicit.ipp:7, from HomogeneousTauLeapingImplicitFixedEuler.cc:6: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/TauLeapingImplicit.h:11, from HomogeneousTauLeapingImplicit.ipp:7, from HomogeneousTauLeapingImplicitFixedEuler.cc:6: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/TauLeapingImplicit.h:11, from HomogeneousTauLeapingImplicit.ipp:7, from HomogeneousTauLeapingImplicitFixedEuler.cc:6: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeapingImplicit.h:11, from HomogeneousTauLeapingImplicit.ipp:7, from HomogeneousTauLeapingImplicitFixedEuler.cc:6: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, from HomogeneousDirect2DSearchSorted.cc:4: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueGreater>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'void numerical::DiscreteGenerator2DSearchSortedStatic::rebuild() [with Generator = numerical::DiscreteUniformGeneratorMt19937]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousDirect2DSearchSorted.cc:10: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, from HomogeneousDirect2DSearchSorted.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchSortedStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchSorted.h:11, from HomogeneousDirect2DSearchSorted.cc:4: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ In file included from HomogeneousTauLeapingImplicitFixedEuler.cc:6: HomogeneousTauLeapingImplicit.ipp: In function 'int main(int, char**)': HomogeneousTauLeapingImplicit.ipp:68:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Solver solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc -lrt -o HomogeneousHistogramsTransientDirectTreeNormalApproximation In file included from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:25: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:49:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingSalLinear.cc -lrt -o HomogeneousTauLeapingSalLinear In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeNormalApproximation.h:11, from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = stochastic::HistogramReference; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeNormalApproximation.h:11, from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:3: /usr/include/c++/8/bits/stl_vector.h: In constructor 'stochastic::HistogramsBase<_DiscreteGenerator, _ExponentialGenerator, _PropensitiesFunctor>::HistogramsBase(const stochastic::State&, const PropensitiesFunctor&, const array::StaticArrayOfArrays&, const std::vector&, const std::vector&, std::size_t, std::size_t, double) [with _DiscreteGenerator = numerical::DiscreteGenerator2DSearch<>; _ExponentialGenerator = numerical::ExponentialGeneratorZiggurat<>; _PropensitiesFunctor = stochastic::PropensitiesSingle]': /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeapingSal.h:11, from HomogeneousTauLeapingSal.ipp:17, from HomogeneousTauLeapingSalLinear.cc:4: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsTransientDirect.ipp:7, from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:25: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeNormalApproximation.h:11, from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeNormalApproximation.h:11, from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:3: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeNormalApproximation.h:11, from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:3: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeNormalApproximation.h:11, from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:3: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousTauLeapingSalLinear.cc:4: HomogeneousTauLeapingSal.ipp: In function 'int main(int, char**)': HomogeneousTauLeapingSal.ipp:78:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 TauLeaping solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousHistogramsTransientDirectTreeNormalApproximation.cc:25: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:81:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousHistogramsTransientDirect.ipp:88:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Solver solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousFirstReactionAbsoluteTime.cc -lrt -o HomogeneousFirstReactionAbsoluteTime In file included from HomogeneousFirstReactionAbsoluteTime.cc:21: HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': HomogeneousFirstReaction.ipp:50:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedForward.cc -lrt -o HomogeneousOdeReactionFixedForward In file included from ../stochastic/Solver.h:11, from ../stochastic/FirstReactionAbsoluteTime.h:11, from HomogeneousFirstReactionAbsoluteTime.cc:4: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousFirstReaction.ipp:8, from HomogeneousFirstReactionAbsoluteTime.cc:21: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousFirstReactionAbsoluteTime.cc:21: HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': HomogeneousFirstReaction.ipp:74:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousFirstReaction.ipp:79:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 FirstReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingGenericList.cc -lrt -o HomogeneousNextReactionHashingGenericList g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedMidpoint.cc -lrt -o HomogeneousOdeReactionFixedMidpoint In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionHashingGenericList.cc:14: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionHashingGenericList.cc:14: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionHashingGenericList.cc:14: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousNextReactionHashingGenericList.cc:14: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedRungeKutta4.cc -lrt -o HomogeneousTauLeapingFixedRungeKutta4 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapPair.cc -lrt -o HomogeneousNextReactionBinaryHeapPair In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionBinaryHeapPair.cc:8: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, from HomogeneousTauLeapingFixedRungeKutta4.cc:9: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, from HomogeneousTauLeapingFixedRungeKutta4.cc:9: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionBinaryHeapPair.cc:8: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousTauLeapingFixedRungeKutta4.cc:9: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 TauLeaping solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousNextReactionBinaryHeapPair.cc:8: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearch.cc -lrt -o HomogeneousDirectLinearSearch In file included from HomogeneousDirectLinearSearch.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionSizeAdaptive.cc -lrt -o HomogeneousNextReactionPartitionSizeAdaptive In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectLinearSearch.cc:11: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from ../ads/indexedPriorityQueue/../../ext/vector.h:12, from ../ads/indexedPriorityQueue/IndexedPriorityQueueBase.h:11, from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearch.h:11, from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearchSizeAdaptive.h:11, from HomogeneousNextReactionPartitionSizeAdaptive.cc:3: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirectLinearSearch.cc:11: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionPartitionSizeAdaptive.cc:11: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionPartitionSizeAdaptive.cc:11: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionPartitionSizeAdaptive.cc:11: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousDirectLinearSearch.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousNextReactionPartitionSizeAdaptive.cc:11: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingForwardNoCorrection.cc -lrt -o HomogeneousTauLeapingForwardNoCorrection In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, from HomogeneousTauLeapingForwardNoCorrection.cc:8: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHybridDirectTauLeapingForward.cc -lrt -o HomogeneousHybridDirectTauLeapingForward In file included from HomogeneousTauLeapingForwardNoCorrection.cc:8: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 TauLeaping solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingForward.cc:6: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingForward.cc:6: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingForward.cc:6: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingForward.cc:6: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousFirstReaction.cc -lrt -o HomogeneousFirstReaction In file included from HomogeneousFirstReaction.cc:19: HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': HomogeneousFirstReaction.ipp:50:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousHybridDirectTauLeapingForward.cc:6: HomogeneousHybridDirectTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousHybridDirectTauLeaping.ipp:84:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/FirstReaction.h:11, from HomogeneousFirstReaction.cc:4: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedMidpoint.cc -lrt -o HomogeneousTauLeapingFixedMidpoint In file included from HomogeneousFirstReaction.cc:19: HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': HomogeneousFirstReaction.ipp:84:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 FirstReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, from HomogeneousTauLeapingFixedMidpoint.cc:9: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchSorted.cc -lrt -o HomogeneousDirectLinearSearchSorted In file included from HomogeneousDirectLinearSearchSorted.cc:13: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectLinearSearchSorted.cc:13: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousTauLeapingFixedMidpoint.cc:9: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 TauLeaping solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectLinearSearchSorted.cc:13: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirectLinearSearchSorted.cc:13: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DgPmfAndSumOrderedPairPointer.h:11, from ../numerical/random/discrete/DiscreteGeneratorLinearSearchSorted.h:11, from HomogeneousDirectLinearSearchSorted.cc:4: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueGreater>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearchBubbleSort.cc -lrt -o HomogeneousDirect2DSearchBubbleSort In file included from HomogeneousDirect2DSearchBubbleSort.cc:10: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousDirectLinearSearchSorted.cc:13: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DgPmfAndSumOrderedPairPointer.h:11, from ../numerical/random/discrete/DiscreteGeneratorLinearSearchSorted.h:11, from HomogeneousDirectLinearSearchSorted.cc:4: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchBubbleSort.h:11, from HomogeneousDirect2DSearchBubbleSort.cc:4: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueGreater>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirect2DSearchBubbleSort.cc:10: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchBubbleSort.h:11, from HomogeneousDirect2DSearchBubbleSort.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirect2DSearchBubbleSort.cc:10: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchBubbleSort.h:11, from HomogeneousDirect2DSearchBubbleSort.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearch.cc -lrt -o HomogeneousNextReactionLinearSearch In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirect2DSearchBubbleSort.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchBubbleSort.h:11, from HomogeneousDirect2DSearchBubbleSort.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchBubbleSort.h:11, from HomogeneousDirect2DSearchBubbleSort.cc:4: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueGreater>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionLinearSearch.cc:8: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousDirect2DSearchBubbleSort.cc:10: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchBubbleSort.h:11, from HomogeneousDirect2DSearchBubbleSort.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGenerator2DSearchBubbleSort.h:11, from HomogeneousDirect2DSearchBubbleSort.cc:4: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionLinearSearch.cc:8: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionPropensities.cc -lrt -o HomogeneousNextReactionPartitionPropensities In file included from HomogeneousNextReactionLinearSearch.cc:8: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionPartitionPropensities.cc:9: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverageAps.cc -lrt -o HomogeneousHistogramsAverageAps In file included from HomogeneousHistogramsAverageAps.cc:10: HomogeneousHistogramsAverageAps.ipp: In function 'int main(int, char**)': HomogeneousHistogramsAverageAps.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionPartitionPropensities.cc:9: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverageAps.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from HomogeneousNextReactionPartitionPropensities.cc:9: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsAverageAps.ipp:13, from HomogeneousHistogramsAverageAps.cc:10: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverageAps.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsAverageBase.h:11, from ../stochastic/HistogramsAverageAps.h:11, from HomogeneousHistogramsAverageAps.ipp:11, from HomogeneousHistogramsAverageAps.cc:10: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverageAps.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsAverageBase.h:11, from ../stochastic/HistogramsAverageAps.h:11, from HomogeneousHistogramsAverageAps.ipp:11, from HomogeneousHistogramsAverageAps.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc -lrt -o HomogeneousHistogramFinalHypoexponentialDirect2DSearch In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverageAps.cc:4: /usr/include/c++/8/bits/stl_vector.h: In function 'int main(int, char**)': /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from HomogeneousHistogramsAverageAps.cc:10: HomogeneousHistogramsAverageAps.ipp:110:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousHistogramsAverageAps.ipp:117:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc:8: HomogeneousHistogramFinalHypoexponentialDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramFinalHypoexponentialDirect.ipp:54:55: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] typedef DiscreteGenerator::DiscreteUniformGenerator DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTrajectoryTreeFull.cc -lrt -o HomogeneousTrajectoryTreeFull HomogeneousTrajectoryTreeFull.cc: In function 'int main(int, char**)': HomogeneousTrajectoryTreeFull.cc:56:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramFinalHypoexponentialDirect.ipp:13, from HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc:8: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/HistogramFinalHypoexponentialDirect.h:11, from HomogeneousHistogramFinalHypoexponentialDirect.ipp:11, from HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc:8: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc:3: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/HistogramFinalHypoexponentialDirect.h:11, from HomogeneousHistogramFinalHypoexponentialDirect.ipp:11, from HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc:8: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousTrajectoryTreeFull.cc:9: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousHistogramFinalHypoexponentialDirect2DSearch.cc:8: HomogeneousHistogramFinalHypoexponentialDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramFinalHypoexponentialDirect.ipp:97:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousHistogramFinalHypoexponentialDirect.ipp:103:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Solver solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/TrajectoryTreeFull.h:11, from HomogeneousTrajectoryTreeFull.cc:7: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/TrajectoryTreeFull.h:11, from HomogeneousTrajectoryTreeFull.cc:7: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/TrajectoryTreeFull.h:11, from HomogeneousTrajectoryTreeFull.cc:7: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TrajectoryTreeFull.h:11, from HomogeneousTrajectoryTreeFull.cc:7: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionRungeKuttaCashKarp.cc -lrt -o HomogeneousOdeReactionRungeKuttaCashKarp HomogeneousTrajectoryTreeFull.cc: In function 'int main(int, char**)': HomogeneousTrajectoryTreeFull.cc:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousTrajectoryTreeFull.cc:104:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Solver solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/Reaction.h:11, from ../stochastic/ReactionSet.h:11, from ../stochastic/Propensities.h:11, from HomogeneousOdeReaction.ipp:10, from HomogeneousOdeReactionRungeKuttaCashKarp.cc:6: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingMidpointNoCorrection.cc -lrt -o HomogeneousTauLeapingMidpointNoCorrection In file included from /usr/include/c++/8/vector:64, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/Reaction.h:11, from ../stochastic/ReactionSet.h:11, from ../stochastic/Propensities.h:11, from HomogeneousOdeReaction.ipp:10, from HomogeneousOdeReactionRungeKuttaCashKarp.cc:6: /usr/include/c++/8/bits/stl_vector.h: In function 'int main(int, char**)': /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, from HomogeneousTauLeapingMidpointNoCorrection.cc:8: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchBubbleSort.cc -lrt -o HomogeneousDirectLinearSearchBubbleSort In file included from HomogeneousDirectLinearSearchBubbleSort.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousTauLeapingMidpointNoCorrection.cc:8: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 TauLeaping solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectLinearSearchBubbleSort.cc:11: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectLinearSearchBubbleSort.cc:11: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirectLinearSearchBubbleSort.cc:11: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DgPmfAndSumOrderedPairPointer.h:11, from ../numerical/random/discrete/DiscreteGeneratorLinearSearchBubbleSort.h:11, from HomogeneousDirectLinearSearchBubbleSort.cc:4: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueGreater>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingFixedForward.cc -lrt -o HomogeneousTauLeapingFixedForward In file included from HomogeneousDirectLinearSearchBubbleSort.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DgPmfAndSumOrderedPairPointer.h:11, from ../numerical/random/discrete/DiscreteGeneratorLinearSearchBubbleSort.h:11, from HomogeneousDirectLinearSearchBubbleSort.cc:4: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, from HomogeneousTauLeapingFixedForward.cc:9: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHybridDirectTauLeapingMidpoint.cc -lrt -o HomogeneousHybridDirectTauLeapingMidpoint In file included from HomogeneousTauLeapingFixedForward.cc:9: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 TauLeaping solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeExponentialLast.cc -lrt -o HomogeneousHistogramsTransientDirectTreeExponentialLast In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingMidpoint.cc:6: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousHistogramsTransientDirectTreeExponentialLast.cc:24: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:49:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingMidpoint.cc:6: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousHybridDirectTauLeapingMidpoint.cc:6: HomogeneousHybridDirectTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousHybridDirectTauLeaping.ipp:84:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsTransientDirect.ipp:7, from HomogeneousHistogramsTransientDirectTreeExponentialLast.cc:24: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeExponentialLast.h:11, from HomogeneousHistogramsTransientDirectTreeExponentialLast.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeExponentialLast.h:11, from HomogeneousHistogramsTransientDirectTreeExponentialLast.cc:3: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeExponentialLast.h:11, from HomogeneousHistogramsTransientDirectTreeExponentialLast.cc:3: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeExponentialLast.h:11, from HomogeneousHistogramsTransientDirectTreeExponentialLast.cc:3: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapPointer.cc -lrt -o HomogeneousNextReactionBinaryHeapPointer In file included from HomogeneousHistogramsTransientDirectTreeExponentialLast.cc:24: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:81:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousHistogramsTransientDirect.ipp:95:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Solver solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionBinaryHeapPointer.cc:8: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionBinaryHeapPointer.cc:8: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectCompositionRejection.cc -lrt -o HomogeneousDirectCompositionRejection In file included from HomogeneousDirectCompositionRejection.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousNextReactionBinaryHeapPointer.cc:8: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirectCompositionRejection.cc:11: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h:15, from ../numerical/random/discrete/DiscreteGeneratorCompositionRejection.h:11, from HomogeneousDirectCompositionRejection.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectCompositionRejection.cc:11: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h:15, from ../numerical/random/discrete/DiscreteGeneratorCompositionRejection.h:11, from HomogeneousDirectCompositionRejection.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectCompositionRejection.cc:11: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../numerical/random/discrete/DiscreteGeneratorCompositionRejection.h:11, from HomogeneousDirectCompositionRejection.cc:4: ../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h: In member function 'void numerical::DiscreteGeneratorCompositionRejectionStatic::initialize(ForwardIterator, ForwardIterator) [with ForwardIterator = __gnu_cxx::__normal_iterator >; Generator = numerical::DiscreteUniformGeneratorMt19937]': ../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h:375:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 initialize(ForwardIterator begin, ForwardIterator end) { ^~~~~~~~~~ ../numerical/random/discrete/DiscreteGeneratorCompositionRejectionStatic.h:375:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionBinaryHeapGibsonBruck.cc -lrt -o HomogeneousNextReactionBinaryHeapGibsonBruck In file included from HomogeneousDirectCompositionRejection.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousDirectCompositionRejection.cc:4: ../numerical/random/discrete/DiscreteGeneratorCompositionRejection.h:183:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 Base::initialize(begin, end); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionBinaryHeapGibsonBruck.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionBinaryHeapGibsonBruck.cc:10: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingRungeKutta4.cc -lrt -o HomogeneousTauLeapingRungeKutta4 In file included from HomogeneousNextReactionBinaryHeapGibsonBruck.cc:10: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, from HomogeneousTauLeapingRungeKutta4.cc:8: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashing.cc -lrt -o HomogeneousNextReactionHashing In file included from HomogeneousTauLeapingRungeKutta4.cc:8: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 TauLeaping solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionHashing.cc:10: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearchSorted.cc -lrt -o HomogeneousDirectBinarySearchSorted In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionHashing.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector >&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionHashing.cc:10: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousDirectBinarySearchSorted.cc:13: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, from HomogeneousDirectBinarySearchSorted.cc:4: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueLess>]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, from HomogeneousDirectBinarySearchSorted.cc:4: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueLess>]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from HomogeneousNextReactionHashing.cc:10: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirectBinarySearchSorted.cc:13: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, from HomogeneousDirectBinarySearchSorted.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectBinarySearchSorted.cc:13: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, from HomogeneousDirectBinarySearchSorted.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectBinarySearchSorted.cc:13: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, from HomogeneousDirectBinarySearchSorted.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, from HomogeneousDirectBinarySearchSorted.cc:4: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::ValueLess>]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'void numerical::DiscreteGeneratorBinarySearchSorted::rebuild() [with Generator = numerical::DiscreteUniformGeneratorMt19937]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingSalFixedLinear.cc -lrt -o HomogeneousTauLeapingSalFixedLinear In file included from HomogeneousDirectBinarySearchSorted.cc:13: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, from HomogeneousDirectBinarySearchSorted.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../numerical/random/discrete/../../../ext/vector.h:12, from ../numerical/random/discrete/DgPmfOrderedPairPointer.h:14, from ../numerical/random/discrete/DiscreteGeneratorBinarySearchSorted.h:11, from HomogeneousDirectBinarySearchSorted.cc:4: /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeapingSal.h:11, from HomogeneousTauLeapingSal.ipp:17, from HomogeneousTauLeapingSalFixedLinear.cc:6: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectRejectionBinsSplitting.cc -lrt -o HomogeneousDirectRejectionBinsSplitting In file included from HomogeneousDirectRejectionBinsSplitting.cc:12: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousTauLeapingSalFixedLinear.cc:6: HomogeneousTauLeapingSal.ipp: In function 'int main(int, char**)': HomogeneousTauLeapingSal.ipp:78:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 TauLeaping solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ads/algorithm/sort.h:17, from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplittingStatic.h:15, from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplitting.h:11, from HomogeneousDirectRejectionBinsSplitting.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirectRejectionBinsSplitting.cc:12: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ads/algorithm/sort.h:17, from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplittingStatic.h:15, from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplitting.h:11, from HomogeneousDirectRejectionBinsSplitting.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectRejectionBinsSplitting.cc:12: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ads/algorithm/sort.h:17, from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplittingStatic.h:15, from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplitting.h:11, from HomogeneousDirectRejectionBinsSplitting.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectRejectionBinsSplitting.cc:12: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingRungeKutta4NoCorrection.cc -lrt -o HomogeneousTauLeapingRungeKutta4NoCorrection In file included from HomogeneousDirectRejectionBinsSplitting.cc:12: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ads/algorithm/sort.h:17, from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplittingStatic.h:15, from ../numerical/random/discrete/DiscreteGeneratorRejectionBinsSplitting.h:11, from HomogeneousDirectRejectionBinsSplitting.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, from HomogeneousTauLeapingRungeKutta4NoCorrection.cc:8: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHybridDirectTauLeapingRungeKutta4.cc -lrt -o HomogeneousHybridDirectTauLeapingRungeKutta4 In file included from HomogeneousTauLeapingRungeKutta4NoCorrection.cc:8: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 TauLeaping solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionCostAdaptive.cc -lrt -o HomogeneousNextReactionPartitionCostAdaptive In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingRungeKutta4.cc:6: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingRungeKutta4.cc:6: /usr/include/c++/8/bits/stl_vector.h: In function 'void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type, std::vector<_Tp, _Alloc>::value_type) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingRungeKutta4.cc:6: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from ../ads/indexedPriorityQueue/../../ext/vector.h:12, from ../ads/indexedPriorityQueue/IndexedPriorityQueueBase.h:11, from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearch.h:11, from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearchCostAdaptive.h:11, from HomogeneousNextReactionPartitionCostAdaptive.cc:3: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingRungeKutta4.cc:6: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingRungeKutta4.cc:6: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/HybridDirectTauLeaping.h:11, from HomogeneousHybridDirectTauLeaping.ipp:17, from HomogeneousHybridDirectTauLeapingRungeKutta4.cc:6: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionPartitionCostAdaptive.cc:11: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionPartitionCostAdaptive.cc:11: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionPartitionCostAdaptive.cc:11: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousHybridDirectTauLeapingRungeKutta4.cc:6: HomogeneousHybridDirectTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousHybridDirectTauLeaping.ipp:84:12: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousNextReactionPartitionCostAdaptive.cc:11: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc -lrt -o HomogeneousHistogramsTransientDirectTreeExponentialLimit In file included from HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc:24: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:49:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearchRecursiveCdf.cc -lrt -o HomogeneousDirectBinarySearchRecursiveCdf In file included from HomogeneousDirectBinarySearchRecursiveCdf.cc:12: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsTransientDirect.ipp:7, from HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc:24: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeExponentialLimit.h:11, from HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectBinarySearchRecursiveCdf.cc:12: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeExponentialLimit.h:11, from HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc:3: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeExponentialLimit.h:11, from HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc:3: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeExponentialLimit.h:11, from HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc:3: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirectBinarySearchRecursiveCdf.cc:12: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousHistogramsTransientDirectTreeExponentialLimit.cc:24: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:81:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousHistogramsTransientDirect.ipp:95:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Solver solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousDirectBinarySearchRecursiveCdf.cc:12: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionPartitionFixedSize.cc -lrt -o HomogeneousNextReactionPartitionFixedSize g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedRungeKuttaCashKarp.cc -lrt -o HomogeneousOdeReactionFixedRungeKuttaCashKarp In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from ../ads/indexedPriorityQueue/../../ext/vector.h:12, from ../ads/indexedPriorityQueue/IndexedPriorityQueueBase.h:11, from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearch.h:11, from ../ads/indexedPriorityQueue/IndexedPriorityQueuePartitionLinearSearchFixedSize.h:11, from HomogeneousNextReactionPartitionFixedSize.cc:3: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionPartitionFixedSize.cc:9: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionPartitionFixedSize.cc:9: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousNextReactionPartitionFixedSize.cc:9: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectLinearSearchDelayedUpdate.cc -lrt -o HomogeneousDirectLinearSearchDelayedUpdate In file included from HomogeneousDirectLinearSearchDelayedUpdate.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsDirectTree.cc -lrt -o HomogeneousHistogramsDirectTree In file included from HomogeneousHistogramsDirectTree.cc:10: HomogeneousHistogramsDirectTree.ipp: In function 'int main(int, char**)': HomogeneousHistogramsDirectTree.ipp:55:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectLinearSearchDelayedUpdate.cc:11: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsDirectTree.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = stochastic::HistogramReference; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsDirectTree.cc:4: /usr/include/c++/8/bits/stl_vector.h: In constructor 'stochastic::HistogramsDirectTree<_DiscreteGenerator, _ExponentialGenerator, _PropensitiesFunctor>::HistogramsDirectTree(const stochastic::State&, const PropensitiesFunctor&, const array::StaticArrayOfArrays&, const std::vector&, const std::vector&, std::size_t, std::size_t, std::size_t, double) [with _DiscreteGenerator = numerical::DiscreteGenerator2DSearch<>; _ExponentialGenerator = numerical::ExponentialGeneratorZiggurat<>; _PropensitiesFunctor = stochastic::PropensitiesSingle]': /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirectLinearSearchDelayedUpdate.cc:11: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsDirectTree.ipp:13, from HomogeneousHistogramsDirectTree.cc:10: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsDirectTree.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = stochastic::HistogramsDirectTree, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime; _Alloc = std::allocator, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime>]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime, std::allocator, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime> >::iterator' {aka '__gnu_cxx::__normal_iterator, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime*, std::vector, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime, std::allocator, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime, std::allocator, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime> >::iterator' {aka '__gnu_cxx::__normal_iterator, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime*, std::vector, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime, std::allocator, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime> > >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HistogramsDirectTree.h:11, from HomogeneousHistogramsDirectTree.ipp:11, from HomogeneousHistogramsDirectTree.cc:10: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsDirectTree.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from HomogeneousDirectLinearSearchDelayedUpdate.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HistogramsDirectTree.h:11, from HomogeneousHistogramsDirectTree.ipp:11, from HomogeneousHistogramsDirectTree.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousHistogramsDirectTree.cc:10: HomogeneousHistogramsDirectTree.ipp: In function 'int main(int, char**)': HomogeneousHistogramsDirectTree.ipp:103:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousHistogramsDirectTree.ipp:109:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Solver solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsDirectTree.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime*, std::vector, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime, std::allocator, numerical::ExponentialGeneratorZiggurat<>, stochastic::PropensitiesSingle >::TrajectoryTime> > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirect2DSearch.cc -lrt -o HomogeneousDirect2DSearch In file included from HomogeneousDirect2DSearch.cc:10: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirect2DSearch.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearchUnrolled.cc -lrt -o HomogeneousNextReactionLinearSearchUnrolled In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirect2DSearch.cc:10: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionLinearSearchUnrolled.cc:8: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionLinearSearchUnrolled.cc:8: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousDirect2DSearch.cc:10: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousNextReactionLinearSearchUnrolled.cc:8: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsMultiTimeDirect2DSearch.cc -lrt -o HomogeneousHistogramsMultiTimeDirect2DSearch In file included from HomogeneousHistogramsMultiTimeDirect2DSearch.cc:10: HomogeneousHistogramsMultiTimeDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsMultiTimeDirect.ipp:55:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingForward.cc -lrt -o HomogeneousTauLeapingForward In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsMultiTimeDirect.ipp:13, from HomogeneousHistogramsMultiTimeDirect2DSearch.cc:10: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsMultiTimeDirect2DSearch.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HistogramsMultiTimeDirect.h:11, from HomogeneousHistogramsMultiTimeDirect.ipp:11, from HomogeneousHistogramsMultiTimeDirect2DSearch.cc:10: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsMultiTimeDirect2DSearch.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, from HomogeneousTauLeapingForward.cc:8: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HistogramsMultiTimeDirect.h:11, from HomogeneousHistogramsMultiTimeDirect.ipp:11, from HomogeneousHistogramsMultiTimeDirect2DSearch.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousHistogramsMultiTimeDirect2DSearch.cc:10: HomogeneousHistogramsMultiTimeDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsMultiTimeDirect.ipp:101:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousHistogramsMultiTimeDirect.ipp:107:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Solver solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousTauLeapingForward.cc:8: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 TauLeaping solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousOdeReactionFixedRungeKutta4.cc -lrt -o HomogeneousOdeReactionFixedRungeKutta4 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousFirstReactionInfluence.cc -lrt -o HomogeneousFirstReactionInfluence In file included from HomogeneousFirstReactionInfluence.cc:21: HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': HomogeneousFirstReaction.ipp:50:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/FirstReaction.h:11, from ../stochastic/FirstReactionInfluence.h:11, from HomogeneousFirstReactionInfluence.cc:4: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousFirstReaction.ipp:8, from HomogeneousFirstReactionInfluence.cc:21: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectBinarySearch.cc -lrt -o HomogeneousDirectBinarySearch In file included from HomogeneousFirstReactionInfluence.cc:21: HomogeneousFirstReaction.ipp: In function 'int main(int, char**)': HomogeneousFirstReaction.ipp:74:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousFirstReaction.ipp:79:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 FirstReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousDirectBinarySearch.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirect.ipp:11, from HomogeneousDirectBinarySearch.cc:11: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverage.cc -lrt -o HomogeneousHistogramsAverage In file included from HomogeneousHistogramsAverage.cc:10: HomogeneousHistogramsAverage.ipp: In function 'int main(int, char**)': HomogeneousHistogramsAverage.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirect.ipp:13, from HomogeneousDirectBinarySearch.cc:11: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverage.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsAverage.ipp:13, from HomogeneousHistogramsAverage.cc:10: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousDirectBinarySearch.cc:11: HomogeneousDirect.ipp: In function 'int main(int, char**)': HomogeneousDirect.ipp:98:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirect.ipp:105:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverage.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsAverageBase.h:11, from ../stochastic/HistogramsAverage.h:11, from HomogeneousHistogramsAverage.ipp:11, from HomogeneousHistogramsAverage.cc:10: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverage.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsAverageBase.h:11, from ../stochastic/HistogramsAverage.h:11, from HomogeneousHistogramsAverage.ipp:11, from HomogeneousHistogramsAverage.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsDirect2DSearch.cc -lrt -o HomogeneousHistogramsDirect2DSearch In file included from HomogeneousHistogramsDirect2DSearch.cc:10: HomogeneousHistogramsDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsDirect.ipp:55:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverage.cc:4: /usr/include/c++/8/bits/stl_vector.h: In function 'int main(int, char**)': /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from HomogeneousHistogramsAverage.cc:10: HomogeneousHistogramsAverage.ipp:110:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousHistogramsAverage.ipp:117:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsDirect.ipp:13, from HomogeneousHistogramsDirect2DSearch.cc:10: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingGenericVector.cc -lrt -o HomogeneousNextReactionHashingGenericVector In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsDirect2DSearch.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HistogramsDirect.h:11, from HomogeneousHistogramsDirect.ipp:11, from HomogeneousHistogramsDirect2DSearch.cc:10: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsDirect2DSearch.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HistogramsDirect.h:11, from HomogeneousHistogramsDirect.ipp:11, from HomogeneousHistogramsDirect2DSearch.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionHashingGenericVector.cc:13: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from HomogeneousHistogramsDirect2DSearch.cc:10: HomogeneousHistogramsDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsDirect.ipp:96:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousHistogramsDirect.ipp:102:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Solver solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionHashingGenericVector.cc:13: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionHashingGenericVector.cc:13: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousDirectAllReactions2DSearch.cc -lrt -o HomogeneousDirectAllReactions2DSearch In file included from HomogeneousDirectAllReactions2DSearch.cc:10: HomogeneousDirectAllReactions.ipp: In function 'int main(int, char**)': HomogeneousDirectAllReactions.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousNextReactionHashingGenericVector.cc:13: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from HomogeneousDirectAllReactions.ipp:11, from HomogeneousDirectAllReactions2DSearch.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousDirectAllReactions2DSearch.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousDirectAllReactions.ipp:13, from HomogeneousDirectAllReactions2DSearch.cc:10: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionLinearSearchPointer.cc -lrt -o HomogeneousNextReactionLinearSearchPointer In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionLinearSearchPointer.cc:8: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousDirectAllReactions2DSearch.cc:4: /usr/include/c++/8/bits/stl_vector.h: In function 'int main(int, char**)': /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from HomogeneousDirectAllReactions2DSearch.cc:10: HomogeneousDirectAllReactions.ipp:102:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousDirectAllReactions.ipp:109:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionLinearSearchPointer.cc:8: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsAverageElapsedTime.cc -lrt -o HomogeneousHistogramsAverageElapsedTime In file included from ../stochastic/HistogramsAverageElapsedTime.h:12, from HomogeneousHistogramsAverageElapsedTime.ipp:11, from HomogeneousHistogramsAverageElapsedTime.cc:10: ../stochastic/modifiedRecordedSpecies.h: In function 'void stochastic::calculateModifiedRecordedSpecies(const _State&, const std::vector&, array::StaticArrayOfArrays*)': ../stochastic/modifiedRecordedSpecies.h:26:48: warning: typedef 'StateChangeVectors' locally defined but not used [-Wunused-local-typedefs] typedef typename _State::StateChangeVectors StateChangeVectors; ^~~~~~~~~~~~~~~~~~ In file included from HomogeneousHistogramsAverageElapsedTime.cc:10: HomogeneousHistogramsAverageElapsedTime.ipp: In function 'int main(int, char**)': HomogeneousHistogramsAverageElapsedTime.ipp:57:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousNextReactionLinearSearchPointer.cc:8: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverageElapsedTime.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = stochastic::HistogramReference; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverageElapsedTime.cc:4: /usr/include/c++/8/bits/stl_vector.h: In constructor 'stochastic::HistogramsAverageElapsedTime<_DiscreteGenerator, _ExponentialGenerator, _PropensitiesFunctor>::HistogramsAverageElapsedTime(const stochastic::State&, const PropensitiesFunctor&, const array::StaticArrayOfArrays&, const std::vector&, std::size_t, std::size_t, double) [with _DiscreteGenerator = numerical::DiscreteGenerator2DSearch<>; _ExponentialGenerator = numerical::ExponentialGeneratorZiggurat<>; _PropensitiesFunctor = stochastic::PropensitiesSingle]': /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousNextReactionHashingVector.cc -lrt -o HomogeneousNextReactionHashingVector In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsAverageElapsedTime.ipp:13, from HomogeneousHistogramsAverageElapsedTime.cc:10: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverageElapsedTime.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsAverageBase.h:11, from ../stochastic/HistogramsAverageElapsedTime.h:11, from HomogeneousHistogramsAverageElapsedTime.ipp:11, from HomogeneousHistogramsAverageElapsedTime.cc:10: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverageElapsedTime.cc:4: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsAverageBase.h:11, from ../stochastic/HistogramsAverageElapsedTime.h:11, from HomogeneousHistogramsAverageElapsedTime.ipp:11, from HomogeneousHistogramsAverageElapsedTime.cc:10: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionHashingVector.cc:12: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../numerical/random/discrete/../../../ext/vector.h:11, from ../numerical/random/discrete/DgPmf.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearchStatic.h:11, from ../numerical/random/discrete/DiscreteGenerator2DSearch.h:11, from HomogeneousHistogramsAverageElapsedTime.cc:4: /usr/include/c++/8/bits/stl_vector.h: In function 'int main(int, char**)': /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from HomogeneousHistogramsAverageElapsedTime.cc:10: HomogeneousHistogramsAverageElapsedTime.ipp:110:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousHistogramsAverageElapsedTime.ipp:117:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Direct solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/NextReaction.h:11, from HomogeneousNextReaction.ipp:11, from HomogeneousNextReactionHashingVector.cc:12: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousNextReaction.ipp:14, from HomogeneousNextReactionHashingVector.cc:12: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousTauLeapingMidpoint.cc -lrt -o HomogeneousTauLeapingMidpoint In file included from HomogeneousNextReactionHashingVector.cc:12: HomogeneousNextReaction.ipp: In function 'int main(int, char**)': HomogeneousNextReaction.ipp:89:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, false); ~~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousNextReaction.ipp:149:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 NextReaction solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/TauLeaping.h:11, from HomogeneousTauLeaping.ipp:17, from HomogeneousTauLeapingMidpoint.cc:8: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/cain-1.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -finline-limit=6000 -O3 -funroll-loops -Wstrict-aliasing -ansi -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc -lrt -o HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit In file included from HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc:25: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:49:5: warning: typedef 'DiscreteUniformGenerator' locally defined but not used [-Wunused-local-typedefs] DiscreteUniformGenerator; ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousTauLeapingMidpoint.cc:8: HomogeneousTauLeaping.ipp: In function 'int main(int, char**)': HomogeneousTauLeaping.ipp:83:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 TauLeaping solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/reactionPropensityInfluence.h:40, from HomogeneousHistogramsTransientDirect.ipp:7, from HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc:25: ../stochastic/reactionPropensityInfluence.ipp: In function 'void stochastic::computeReactionPropensityInfluence(std::size_t, ForwardIterator, ForwardIterator, array::StaticArrayOfArrays*, bool) [with ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 computeReactionPropensityInfluence ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../stochastic/reactionPropensityInfluence.ipp:13:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.h:11, from HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../stochastic/State.h:347, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.h:11, from HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc:3: ../stochastic/State.ipp: In member function 'void stochastic::State::buildStateChangeVectors(_ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State:: ^~~~~ ../stochastic/State.ipp:12:1: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../stochastic/../array/SparseVector.h:19, from ../stochastic/State.h:11, from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.h:11, from HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc:3: /usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ^~~~~~~~~~~~~~ In file included from ../stochastic/Solver.h:11, from ../stochastic/Direct.h:11, from ../stochastic/HistogramsBase.h:11, from ../stochastic/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.h:11, from HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc:3: ../stochastic/State.h: In constructor 'stochastic::State::State(const std::vector&, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >]': ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 State(const std::vector& populations, ^~~~~ ../stochastic/State.h:88:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 ../stochastic/State.h:96:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 buildStateChangeVectors(reactionsBegin, reactionsEnd); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.cc:25: HomogeneousHistogramsTransientDirect.ipp: In function 'int main(int, char**)': HomogeneousHistogramsTransientDirect.ipp:81:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 stochastic::computeReactionPropensityInfluence ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (initialPopulations.size(), reactions.getBeginning(), reactions.getEnd(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &reactionInfluence, true); ~~~~~~~~~~~~~~~~~~~~~~~~~ HomogeneousHistogramsTransientDirect.ipp:88:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 Solver solver(State(initialPopulations, reactions.getBeginning(), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ reactions.getEnd()), ~~~~~~~~~~~~~~~~~~~ mkdir -p ../../solvers mv HomogeneousTauLeapingImplicitFixedEuler HomogeneousDirect2DSearchSorted HomogeneousHistogramsTransientDirectTreeNormalApproximation HomogeneousTauLeapingSalLinear HomogeneousFirstReactionAbsoluteTime HomogeneousOdeReactionFixedForward HomogeneousNextReactionHashingGenericList HomogeneousOdeReactionFixedMidpoint HomogeneousTauLeapingFixedRungeKutta4 HomogeneousNextReactionBinaryHeapPair HomogeneousDirectLinearSearch HomogeneousNextReactionPartitionSizeAdaptive HomogeneousTauLeapingForwardNoCorrection HomogeneousHybridDirectTauLeapingForward HomogeneousFirstReaction HomogeneousTauLeapingFixedMidpoint HomogeneousDirectLinearSearchSorted HomogeneousDirect2DSearchBubbleSort HomogeneousNextReactionLinearSearch HomogeneousNextReactionPartitionPropensities HomogeneousHistogramsAverageAps HomogeneousHistogramFinalHypoexponentialDirect2DSearch HomogeneousTrajectoryTreeFull HomogeneousOdeReactionRungeKuttaCashKarp HomogeneousTauLeapingMidpointNoCorrection HomogeneousDirectLinearSearchBubbleSort HomogeneousTauLeapingFixedForward HomogeneousHybridDirectTauLeapingMidpoint HomogeneousHistogramsTransientDirectTreeExponentialLast HomogeneousNextReactionBinaryHeapPointer HomogeneousDirectCompositionRejection HomogeneousNextReactionBinaryHeapGibsonBruck HomogeneousTauLeapingRungeKutta4 HomogeneousNextReactionHashing HomogeneousDirectBinarySearchSorted HomogeneousTauLeapingSalFixedLinear HomogeneousDirectRejectionBinsSplitting HomogeneousTauLeapingRungeKutta4NoCorrection HomogeneousHybridDirectTauLeapingRungeKutta4 HomogeneousNextReactionPartitionCostAdaptive HomogeneousHistogramsTransientDirectTreeExponentialLimit HomogeneousDirectBinarySearchRecursiveCdf HomogeneousNextReactionPartitionFixedSize HomogeneousOdeReactionFixedRungeKuttaCashKarp HomogeneousDirectLinearSearchDelayedUpdate HomogeneousHistogramsDirectTree HomogeneousDirect2DSearch HomogeneousNextReactionLinearSearchUnrolled HomogeneousHistogramsMultiTimeDirect2DSearch HomogeneousTauLeapingForward HomogeneousOdeReactionFixedRungeKutta4 HomogeneousFirstReactionInfluence HomogeneousDirectBinarySearch HomogeneousHistogramsAverage HomogeneousHistogramsDirect2DSearch HomogeneousNextReactionHashingGenericVector HomogeneousDirectAllReactions2DSearch HomogeneousNextReactionLinearSearchPointer HomogeneousHistogramsAverageElapsedTime HomogeneousNextReactionHashingVector HomogeneousTauLeapingMidpoint HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit ../../solvers make[3]: Leaving directory '/build/cain-1.10+dfsg/src/solvers' make[2]: Leaving directory '/build/cain-1.10+dfsg' make[1]: Leaving directory '/build/cain-1.10+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/cain-1.10+dfsg' echo "no tests implemented" no tests implemented make[1]: Leaving directory '/build/cain-1.10+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2 dh_testroot dh_prep dh_auto_install debian/rules override_dh_install-indep make[1]: Entering directory '/build/cain-1.10+dfsg' dh_install rm -rf debian/cain/usr/share/cain/help/* debian/cain/usr/share/cain/gui/help.htm* find help -type d | xargs chmod 755 find help -type f | xargs chmod 644 find help | xargs touch --no-dereference --date='Fri, 13 Jul 2018 17:12:44 +0200' cd help && (find . -type f -not \( -name "*.htb" -or -name "*.htd" \) -print0 | \ LC_ALL=C sort -z | \ xargs -0 zip ../debian/cain/usr/share/cain/help/cain.htb -X -r -q) touch --no-dereference --date='Fri, 13 Jul 2018 17:12:44 +0200' debian/cain/usr/share/cain/help/cain.htb if [ -d debian/cain/usr/share/cain/ ] ; then \ find debian/cain/usr/share/cain/ -type f -executable -exec chmod 644 {} + ; \ fi make[1]: Leaving directory '/build/cain-1.10+dfsg' dh_install -Ncain -Ncain-examples dh_installdocs dh_installchangelogs dh_installman dh_python2 W: dh_python2:479: Please add dh-python package to Build-Depends dh_perl dh_link dh_strip_nondeterminism debian/cain/usr/share/cain/gui/icons/dice.png: 2 bytes of garbage after IEND chunk at /usr/share/perl5/File/StripNondeterminism/handlers/png.pm line 155. debian/cain/usr/share/cain/gui/icons/beakers.png: 2 bytes of garbage after IEND chunk at /usr/share/perl5/File/StripNondeterminism/handlers/png.pm line 155. dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingRungeKutta4 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousOdeReactionFixedMidpoint contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectBinarySearchRecursiveCdf contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHybridDirectTauLeapingMidpoint contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsAverage contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionBinaryHeapPointer contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsDirect2DSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectLinearSearchSorted contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousOdeReactionRungeKuttaCashKarp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionPartitionPropensities contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHybridDirectTauLeapingForward contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionPartitionCostAdaptive contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLimit contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLast contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirect2DSearchBubbleSort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectBinarySearchSorted contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionPartitionFixedSize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectAllReactions2DSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionHashing contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionLinearSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramFinalHypoexponentialDirect2DSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirect2DSearchSorted contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsAverageElapsedTime contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsDirectTree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionLinearSearchPointer contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectRejectionBinsSplitting contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionHashingGenericVector contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionBinaryHeapPair contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsTransientDirectTreeNormalApproximation contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingFixedRungeKutta4 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectLinearSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousFirstReactionInfluence contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionHashingGenericList contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionBinaryHeapGibsonBruck contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTrajectoryTreeFull contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingMidpointNoCorrection contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectCompositionRejection contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectLinearSearchDelayedUpdate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingRungeKutta4NoCorrection contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousFirstReaction contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousFirstReactionAbsoluteTime contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectLinearSearchBubbleSort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingSalLinear contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionHashingVector contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsAverageAps contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirectBinarySearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingFixedForward contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingFixedMidpoint contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingImplicitFixedEuler contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousOdeReactionFixedRungeKutta4 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousDirect2DSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionLinearSearchUnrolled contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousNextReactionPartitionSizeAdaptive contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingMidpoint contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousOdeReactionFixedRungeKuttaCashKarp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingForward contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingForwardNoCorrection contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHybridDirectTauLeapingRungeKutta4 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousTauLeapingSalFixedLinear contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousOdeReactionFixedForward contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/cain-solvers/usr/lib/cain/solvers/HomogeneousHistogramsMultiTimeDirect2DSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package cain-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package cain: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'cain-solvers-dbgsym' in '../cain-solvers-dbgsym_1.10+dfsg-3_armhf.deb'. dpkg-deb: building package 'cain' in '../cain_1.10+dfsg-3_all.deb'. dpkg-deb: building package 'cain-solvers' in '../cain-solvers_1.10+dfsg-3_armhf.deb'. dpkg-deb: building package 'cain-examples' in '../cain-examples_1.10+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../cain_1.10+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/30594/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/30594/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/30594 and its subdirectories I: Current time: Sun May 31 15:41:24 +14 2020 I: pbuilder-time-stamp: 1590889284