I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 22 10:31:44 -12 2020 I: pbuilder-time-stamp: 1595457104 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan_1.4.2+dfsg-3.dsc] I: copying [./seqan_1.4.2+dfsg.orig.tar.xz] I: copying [./seqan_1.4.2+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Jul 16 00:14:02 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./seqan_1.4.2+dfsg-3.dsc dpkg-source: info: extracting seqan in seqan-1.4.2+dfsg dpkg-source: info: unpacking seqan_1.4.2+dfsg.orig.tar.xz dpkg-source: info: unpacking seqan_1.4.2+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_extras_and_apps.patch dpkg-source: info: applying skip_doc_creation.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/29832/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='29832' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ka5seTrdzc/pbuilderrc_ntlk --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ka5seTrdzc/b1 --logfile b1/build.log seqan_1.4.2+dfsg-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled12-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 21 20:27 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/29832/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), cmake, zlib1g-dev, libbam-dev, libboost-dev, dh-exec, help2man, python dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbam-dev; however: Package libbam-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python; however: Package python is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbam-dev{a} libboost-dev{a} libboost1.67-dev{a} libbsd0{a} libcroco3{a} libcurl4{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgssapi-krb5-2{a} libicu63{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps7{a} libpsl5{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline7{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} mime-support{a} po-debconf{a} procps{a} python{a} python-minimal{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 40.5 MB of archives. After unpacking 253 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 liblocale-gettext-perl arm64 1.07-3+b4 [18.8 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 libprocps7 arm64 2:3.3.15-2 [58.0 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 lsb-base all 10.2019051400 [28.4 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 procps arm64 2:3.3.15-2 [245 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 cmake-data all 3.13.4-1 [1476 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libarchive13 arm64 3.3.3-4+deb10u1 [291 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libnghttp2-14 arm64 1.36.0-2+deb10u1 [81.9 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libcurl4 arm64 7.64.0-4+deb10u1 [312 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 libjsoncpp1 arm64 1.7.4-3 [71.0 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 librhash0 arm64 1.3.8-1 [121 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libuv1 arm64 1.24.1-1 [105 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 cmake arm64 3.13.4-1 [3046 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 dh-exec arm64 0.23.1 [25.9 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 help2man arm64 1.47.8 [177 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libbam-dev arm64 0.1.19-4 [119 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 libboost1.67-dev arm64 1.67.0-13+deb10u1 [8388 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libboost-dev arm64 1.67.0.1 [3864 B] Get: 78 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Fetched 40.5 MB in 3s (11.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:arm64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. 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Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up libkrb5support0:arm64 (1.17-3) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:arm64 (1.24.1-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libbam-dev (0.1.19-4) ... Setting up libk5crypto3:arm64 (1.17-3) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up librhash0:arm64 (1.3.8-1) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libssh2-1:arm64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... 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Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:arm64 (7.64.0-4+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:arm64 (2.7.16-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up cmake (3.13.4-1) ... Setting up python (2.7.16-1) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-exec (0.23.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/seqan-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package seqan dpkg-buildpackage: info: source version 1.4.2+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/seqan-1.4.2+dfsg' dh_auto_clean find . -type f -name "*.pyc" -delete if [ -d orig ] ; then \ for header in `find orig -name "*generated_forwards.h"` ; do \ mv ${header} `echo $header | sed 's?orig/??'` ; \ done ; \ fi rm -rf orig make[1]: Leaving directory '/build/seqan-1.4.2+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/seqan-dev.substvars debian/files rm -fr -- debian/seqan-dev/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure install -d obj-aarch64-linux-gnu cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- No revision system found. -- Repository date not determined. -- Repository revision not determined. -- Configuring core -- Configuring core/demos -- Looking for include file execinfo.h -- Looking for include file execinfo.h - found -- BZip2 libraries could not be found! -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Determined version is 1.4.2 -- Found PythonInterp: /usr/bin/python (found version "2.7.16") -- Configuring core/tests -- Configuring core/tests/align -- Configuring core/tests/arg_parse -- Configuring core/tests/bam_io -- Configuring core/tests/basic -- Configuring core/tests/consensus -- Configuring core/tests/file -- Configuring core/tests/find -- Configuring core/tests/gff_io -- Configuring core/tests/graph_algorithms -- Configuring core/tests/graph_align -- Configuring core/tests/graph_msa -- Configuring core/tests/graph_types -- Configuring core/tests/index -- Configuring core/tests/map -- Configuring core/tests/misc -- Configuring core/tests/modifier -- Configuring core/tests/parallel -- Configuring core/tests/pipe -- Configuring core/tests/random -- Configuring core/tests/score -- Configuring core/tests/seeds -- Configuring core/tests/seq_io -- BZip2 libraries could not be found! -- Configuring core/tests/sequence -- Configuring core/tests/sequence_journaled -- Configuring core/tests/store -- Configuring core/tests/stream -- BZip2 libraries could not be found! -- Configuring core/tests/find_swift -- Configuring util/py_lib -- Python nosetests ('import nose' failed), cannot add tests for seqan.dox -- Could NOT find Java (missing: Java_JAVA_EXECUTABLE Java_JAR_EXECUTABLE Java_JAVAC_EXECUTABLE Java_JAVAH_EXECUTABLE Java_JAVADOC_EXECUTABLE) -- jar binary not found, disabling CTD support. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/seqan-1.4.2+dfsg -B/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_core make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'. make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 0%] Built target seqan_core make -f core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/DependInfo.cmake --color= make -f core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/DependInfo.cmake --color= make -f core/demos/CMakeFiles/demo_tutorial_store_store_access_aligned_reads2.dir/build.make core/demos/CMakeFiles/demo_tutorial_store_store_access_aligned_reads2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_store_store_access_aligned_reads2.dir/DependInfo.cmake --color= make -f core/demos/CMakeFiles/demo_tutorial_store_store_access_aligned_reads.dir/build.make core/demos/CMakeFiles/demo_tutorial_store_store_access_aligned_reads.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_store_store_access_aligned_reads.dir/DependInfo.cmake --color= make -f core/demos/CMakeFiles/demo_tutorial_sequences_string_assignment_1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequences_string_assignment_1_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequences_string_assignment_1_solution.dir/DependInfo.cmake --color= make -f core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_2_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_2_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_2_solution.dir/DependInfo.cmake --color= make -f core/demos/CMakeFiles/demo_tutorial_sequences_lexical_assignment_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequences_lexical_assignment_solution.dir/depend make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequences_lexical_assignment_solution.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_assignment_4_workshop_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/build Scanning dependencies of target demo_tutorial_sequences_string_assignment_1_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequences_string_assignment_1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequences_string_assignment_1_solution.dir/build Scanning dependencies of target demo_tutorial_sequences_lexical_assignment_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequences_lexical_assignment_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequences_lexical_assignment_solution.dir/build Scanning dependencies of target demo_tutorial_sequences_segments_assignment_2_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_string_sets_assignment_2_solution make -f core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_2_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_2_solution.dir/build make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_store_store_access_aligned_reads make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_store_store_access_aligned_reads.dir/build.make core/demos/CMakeFiles/demo_tutorial_store_store_access_aligned_reads.dir/build [ 0%] Building CXX object core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/string_sets/assignment_4_workshop_solution.cpp make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequences_string_assignment_1_solution.dir/tutorial/sequences/string_assignment_1_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequences_string_assignment_1_solution.dir/tutorial/sequences/string_assignment_1_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequences/string_assignment_1_solution.cpp Scanning dependencies of target demo_tutorial_store_store_access_aligned_reads2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_sequence_io_solution3 make -f core/demos/CMakeFiles/demo_tutorial_store_store_access_aligned_reads2.dir/build.make core/demos/CMakeFiles/demo_tutorial_store_store_access_aligned_reads2.dir/build [ 1%] Building CXX object core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/string_sets/assignment_2_solution.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/build [ 1%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_2_solution.dir/tutorial/sequences/segments_assignment_2_solution.cpp.o [ 1%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequences_lexical_assignment_solution.dir/tutorial/sequences/lexical_assignment_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequences_segments_assignment_2_solution.dir/tutorial/sequences/segments_assignment_2_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequences/segments_assignment_2_solution.cpp cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequences_lexical_assignment_solution.dir/tutorial/sequences/lexical_assignment_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequences/lexical_assignment_solution.cpp make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object core/demos/CMakeFiles/demo_tutorial_store_store_access_aligned_reads.dir/tutorial/store/store_access_aligned_reads.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_store_store_access_aligned_reads.dir/tutorial/store/store_access_aligned_reads.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/store/store_access_aligned_reads.cpp [ 1%] Building CXX object core/demos/CMakeFiles/demo_tutorial_store_store_access_aligned_reads2.dir/tutorial/store/store_access_aligned_reads2.cpp.o [ 1%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_solution3.dir/tutorial/sequence_io/solution3.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_store_store_access_aligned_reads2.dir/tutorial/store/store_access_aligned_reads2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/store/store_access_aligned_reads2.cpp cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_solution3.dir/tutorial/sequence_io/solution3.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution3.cpp [ 1%] Linking CXX executable ../../bin/demo_tutorial_sequences_segments_assignment_2_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_segments_assignment_2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequences_segments_assignment_2_solution.dir/tutorial/sequences/segments_assignment_2_solution.cpp.o -o ../../bin/demo_tutorial_sequences_segments_assignment_2_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target demo_tutorial_sequences_segments_assignment_2_solution make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example8.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example8.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_example8.dir/DependInfo.cmake --color= [ 1%] Linking CXX executable ../../bin/demo_tutorial_sequences_string_assignment_1_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_string_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequences_string_assignment_1_solution.dir/tutorial/sequences/string_assignment_1_solution.cpp.o -o ../../bin/demo_tutorial_sequences_string_assignment_1_solution -lrt -lz Scanning dependencies of target demo_tutorial_sequence_io_example8 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example8.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example8.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 2%] Linking CXX executable ../../bin/demo_tutorial_sequences_lexical_assignment_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_lexical_assignment_solution.dir/link.txt --verbose=1 [ 2%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_example8.dir/tutorial/sequence_io/example8.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_example8.dir/tutorial/sequence_io/example8.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example8.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequences_lexical_assignment_solution.dir/tutorial/sequences/lexical_assignment_solution.cpp.o -o ../../bin/demo_tutorial_sequences_lexical_assignment_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 2%] Built target demo_tutorial_sequences_string_assignment_1_solution make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example6.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example6.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_example6.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 2%] Built target demo_tutorial_sequences_lexical_assignment_solution make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_example6 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example6.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example6.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_sequence_io_example1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/build [ 2%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_example6.dir/tutorial/sequence_io/example6.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_example6.dir/tutorial/sequence_io/example6.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example6.cpp make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example1.cpp [ 3%] Linking CXX executable ../../bin/demo_tutorial_string_sets_assignment_2_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_2_solution.dir/tutorial/string_sets/assignment_2_solution.cpp.o -o ../../bin/demo_tutorial_string_sets_assignment_2_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target demo_tutorial_string_sets_assignment_2_solution make -f core/demos/CMakeFiles/demo_tutorial_sequence_sequence_all_strings.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_sequence_all_strings.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_sequence_all_strings.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_sequence_all_strings make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_sequence_all_strings.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_sequence_all_strings.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_sequence_all_strings.dir/tutorial/sequence/sequence_all_strings.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_sequence_all_strings.dir/tutorial/sequence/sequence_all_strings.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence/sequence_all_strings.cpp [ 3%] Linking CXX executable ../../bin/demo_tutorial_string_sets_assignment_4_workshop_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_4_workshop_solution.dir/tutorial/string_sets/assignment_4_workshop_solution.cpp.o -o ../../bin/demo_tutorial_string_sets_assignment_4_workshop_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target demo_tutorial_string_sets_assignment_4_workshop_solution make -f core/demos/CMakeFiles/demo_tutorial_sequence_count_characters.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_count_characters.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_count_characters.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_count_characters make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_count_characters.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_count_characters.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_count_characters.dir/tutorial/sequence/count_characters.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_count_characters.dir/tutorial/sequence/count_characters.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence/count_characters.cpp [ 4%] Linking CXX executable ../../bin/demo_tutorial_sequence_sequence_all_strings cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_sequence_all_strings.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_sequence_all_strings.dir/tutorial/sequence/sequence_all_strings.cpp.o -o ../../bin/demo_tutorial_sequence_sequence_all_strings -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target demo_tutorial_sequence_sequence_all_strings make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution7.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution7.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution7.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_solution7 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution7.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution7.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution7.dir/tutorial/seed_and_extend/solution7.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_solution7.dir/tutorial/seed_and_extend/solution7.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/solution7.cpp [ 4%] Linking CXX executable ../../bin/demo_tutorial_sequence_count_characters cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_count_characters.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_count_characters.dir/tutorial/sequence/count_characters.cpp.o -o ../../bin/demo_tutorial_sequence_count_characters -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target demo_tutorial_sequence_count_characters make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_solution6 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/solution6.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution3.cpp:5: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution3.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/store/store_access_aligned_reads.cpp:3: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/store/store_access_aligned_reads.cpp:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/store/store_access_aligned_reads2.cpp:3: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/store/store_access_aligned_reads2.cpp:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example8.cpp:1: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:44, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example8.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_solution3 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution3.dir/tutorial/sequence_io/solution3.cpp.o -o ../../bin/demo_tutorial_sequence_io_solution3 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target demo_tutorial_sequence_io_solution3 make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_solution5 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/solution5.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example6.cpp:1: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:44, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example6.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example1.cpp:4: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example1.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_solution6 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution6.dir/tutorial/seed_and_extend/solution6.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_solution6 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Built target demo_tutorial_seed_and_extend_solution6 make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/DependInfo.cmake --color= [ 5%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_example8 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example8.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_example8.dir/tutorial/sequence_io/example8.cpp.o -o ../../bin/demo_tutorial_sequence_io_example8 -lrt -lz Scanning dependencies of target demo_tutorial_seed_and_extend_solution2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/solution2.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Built target demo_tutorial_sequence_io_example8 make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_example7 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/example7.cpp [ 5%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_example1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_example1.dir/tutorial/sequence_io/example1.cpp.o -o ../../bin/demo_tutorial_sequence_io_example1 -lrt -lz [ 5%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_example6 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_example6.dir/tutorial/sequence_io/example6.cpp.o -o ../../bin/demo_tutorial_sequence_io_example6 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Built target demo_tutorial_sequence_io_example1 make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_seed_and_extend_example6 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/build [ 5%] Built target demo_tutorial_sequence_io_example6 make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/tutorial/seed_and_extend/example6.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/tutorial/seed_and_extend/example6.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/example6.cpp Scanning dependencies of target demo_tutorial_seed_and_extend_example5 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/example5.cpp [ 5%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_solution5 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution5.dir/tutorial/seed_and_extend/solution5.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_solution5 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Built target demo_tutorial_seed_and_extend_solution5 make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_example4 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/example4.cpp [ 5%] Linking CXX executable ../../bin/demo_tutorial_store_store_access_aligned_reads cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_store_store_access_aligned_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_store_store_access_aligned_reads.dir/tutorial/store/store_access_aligned_reads.cpp.o -o ../../bin/demo_tutorial_store_store_access_aligned_reads -lrt -lz [ 5%] Linking CXX executable ../../bin/demo_tutorial_store_store_access_aligned_reads2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_store_store_access_aligned_reads2.dir/link.txt --verbose=1 [ 5%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_example7 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_store_store_access_aligned_reads2.dir/tutorial/store/store_access_aligned_reads2.cpp.o -o ../../bin/demo_tutorial_store_store_access_aligned_reads2 -lrt -lz /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example7.dir/tutorial/seed_and_extend/example7.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_example7 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_solution2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/link.txt --verbose=1 [ 5%] Built target demo_tutorial_store_store_access_aligned_reads make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example3.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example3.dir/depend /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution2.dir/tutorial/seed_and_extend/solution2.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_solution2 -lrt -lz make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_example3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_example3 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example3.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example3.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_example3.dir/tutorial/sequence_io/example3.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_example3.dir/tutorial/sequence_io/example3.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example3.cpp [ 5%] Built target demo_tutorial_seed_and_extend_example7 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Built target demo_tutorial_seed_and_extend_solution2 make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution2.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution2.dir/DependInfo.cmake --color= [ 5%] Built target demo_tutorial_store_store_access_aligned_reads2 make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution1.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_example1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_rnaseq_genequant_solution2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution2.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution2.dir/build Scanning dependencies of target demo_tutorial_rnaseq_genequant_solution1 make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution1.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/example1.cpp [ 5%] Building CXX object core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution2.dir/tutorial/rnaseq/genequant_solution2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_rnaseq_genequant_solution2.dir/tutorial/rnaseq/genequant_solution2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution2.cpp [ 5%] Building CXX object core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution1.dir/tutorial/rnaseq/genequant_solution1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_rnaseq_genequant_solution1.dir/tutorial/rnaseq/genequant_solution1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution1.cpp [ 5%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_example5 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example5.dir/tutorial/seed_and_extend/example5.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_example5 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Built target demo_tutorial_seed_and_extend_example5 make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment3.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment3.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_rnaseq_genequant_assignment3 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment3.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment3.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Building CXX object core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment3.dir/tutorial/rnaseq/genequant_assignment3.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_rnaseq_genequant_assignment3.dir/tutorial/rnaseq/genequant_assignment3.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment3.cpp [ 5%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_example6 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example6.dir/tutorial/seed_and_extend/example6.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_example6 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Built target demo_tutorial_seed_and_extend_example6 make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_rnaseq_genequant_assignment1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 5%] Building CXX object core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment1.dir/tutorial/rnaseq/genequant_assignment1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_rnaseq_genequant_assignment1.dir/tutorial/rnaseq/genequant_assignment1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment1.cpp [ 6%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_example1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example1.dir/tutorial/seed_and_extend/example1.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_example1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 6%] Built target demo_tutorial_seed_and_extend_example1 make -f core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modview.dir/build.make core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modview.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modview.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_modifiers_modifier_modview make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modview.dir/build.make core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modview.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 6%] Building CXX object core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modview.dir/tutorial/modifiers/modifier_modview.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_modifiers_modifier_modview.dir/tutorial/modifiers/modifier_modview.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/modifiers/modifier_modview.cpp [ 6%] Linking CXX executable ../../bin/demo_tutorial_modifiers_modifier_modview cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_modifier_modview.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_modifiers_modifier_modview.dir/tutorial/modifiers/modifier_modview.cpp.o -o ../../bin/demo_tutorial_modifiers_modifier_modview -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 6%] Built target demo_tutorial_modifiers_modifier_modview make -f core/demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_modifiers_assignment1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 6%] Building CXX object core/demos/CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/modifiers/assignment1.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example3.cpp:4: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example3.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_example4 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example4.dir/tutorial/seed_and_extend/example4.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_example4 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 7%] Built target demo_tutorial_seed_and_extend_example4 make -f core/demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_modifiers_assignment1_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object core/demos/CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/modifiers/assignment1_solution.cpp [ 7%] Linking CXX executable ../../bin/demo_tutorial_modifiers_assignment1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_modifiers_assignment1.dir/tutorial/modifiers/assignment1.cpp.o -o ../../bin/demo_tutorial_modifiers_assignment1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 7%] Built target demo_tutorial_modifiers_assignment1 make -f core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_4_workshop_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_4_workshop_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_4_workshop_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_iterators_iterators_assignment_4_workshop_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_4_workshop_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_4_workshop_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/iterators_assignment_4_workshop_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_iterators_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/iterators_assignment_4_workshop_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/iterators/iterators_assignment_4_workshop_solution.cpp [ 7%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_example3 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_example3.dir/tutorial/sequence_io/example3.cpp.o -o ../../bin/demo_tutorial_sequence_io_example3 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 7%] Built target demo_tutorial_sequence_io_example3 make -f core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_3_workshop_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_3_workshop_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_3_workshop_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_iterators_iterators_assignment_3_workshop_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_3_workshop_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_3_workshop_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/iterators_assignment_3_workshop_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_iterators_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/iterators_assignment_3_workshop_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/iterators/iterators_assignment_3_workshop_solution.cpp [ 7%] Linking CXX executable ../../bin/demo_tutorial_modifiers_assignment1_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_modifiers_assignment1_solution.dir/tutorial/modifiers/assignment1_solution.cpp.o -o ../../bin/demo_tutorial_modifiers_assignment1_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 7%] Built target demo_tutorial_modifiers_assignment1_solution make -f core/demos/CMakeFiles/demo_tutorial_index_iterator_solution1.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_iterator_solution1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_iterator_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_iterator_solution1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_iterator_solution1.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_iterator_solution1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 8%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_iterator_solution1.dir/tutorial/index/iterator_solution1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_iterator_solution1.dir/tutorial/index/iterator_solution1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/iterator_solution1.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:36, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution1.cpp:2: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution1.cpp:1: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 8%] Linking CXX executable ../../bin/demo_tutorial_iterators_iterators_assignment_4_workshop_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_iterators_assignment_4_workshop_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_iterators_iterators_assignment_4_workshop_solution.dir/tutorial/iterators/iterators_assignment_4_workshop_solution.cpp.o -o ../../bin/demo_tutorial_iterators_iterators_assignment_4_workshop_solution -lrt -lz In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:36, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution2.cpp:2: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution2.cpp:1: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 8%] Built target demo_tutorial_iterators_iterators_assignment_4_workshop_solution make -f core/demos/CMakeFiles/demo_tutorial_index_indices_assignment_1.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_indices_assignment_1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_indices_assignment_1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_indices_assignment_1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_indices_assignment_1.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_indices_assignment_1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:36, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment1.cpp:2: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment1.cpp:1: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 8%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_indices_assignment_1.dir/tutorial/index/indices_assignment_1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_indices_assignment_1.dir/tutorial/index/indices_assignment_1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/indices_assignment_1.cpp [ 8%] Linking CXX executable ../../bin/demo_tutorial_iterators_iterators_assignment_3_workshop_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_iterators_assignment_3_workshop_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_iterators_iterators_assignment_3_workshop_solution.dir/tutorial/iterators/iterators_assignment_3_workshop_solution.cpp.o -o ../../bin/demo_tutorial_iterators_iterators_assignment_3_workshop_solution -lrt -lz In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution1.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution1.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:36, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment3.cpp:2: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment3.cpp:1: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 8%] Built target demo_tutorial_iterators_iterators_assignment_3_workshop_solution make -f core/demos/CMakeFiles/demo_tutorial_index_index_search2.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_search2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_index_search2.dir/DependInfo.cmake --color= In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution2.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution2.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Scanning dependencies of target demo_tutorial_index_index_search2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_index_search2.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_search2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 8%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_index_search2.dir/tutorial/index/index_search2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_index_search2.dir/tutorial/index/index_search2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_search2.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment1.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment1.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment3.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment3.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Linking CXX executable ../../bin/demo_tutorial_index_indices_assignment_1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_indices_assignment_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_indices_assignment_1.dir/tutorial/index/indices_assignment_1.cpp.o -o ../../bin/demo_tutorial_index_indices_assignment_1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 8%] Built target demo_tutorial_index_indices_assignment_1 make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example2.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_example2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_example2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example2.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 8%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_example2.dir/tutorial/sequence_io/example2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_example2.dir/tutorial/sequence_io/example2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example2.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_search2.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:573:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_search2.cpp:2: /usr/include/c++/8/new: In function 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 8%] Linking CXX executable ../../bin/demo_tutorial_index_index_search2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_index_search2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_index_search2.dir/tutorial/index/index_search2.cpp.o -o ../../bin/demo_tutorial_index_index_search2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 8%] Built target demo_tutorial_index_index_search2 make -f core/demos/CMakeFiles/demo_tutorial_index_index_search.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_search.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_index_search.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_index_search make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_index_search.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_search.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 8%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_index_search.dir/tutorial/index/index_search.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_index_search.dir/tutorial/index/index_search.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_search.cpp [ 9%] Linking CXX executable ../../bin/demo_tutorial_rnaseq_genequant_assignment1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_rnaseq_genequant_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_rnaseq_genequant_assignment1.dir/tutorial/rnaseq/genequant_assignment1.cpp.o -o ../../bin/demo_tutorial_rnaseq_genequant_assignment1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 9%] Built target demo_tutorial_rnaseq_genequant_assignment1 make -f core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3b_workshop_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3b_workshop_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3b_workshop_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_assignment_3b_workshop_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3b_workshop_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3b_workshop_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 9%] Building CXX object core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3b_workshop_solution.dir/tutorial/string_sets/assignment_3b_workshop_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_string_sets_assignment_3b_workshop_solution.dir/tutorial/string_sets/assignment_3b_workshop_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/string_sets/assignment_3b_workshop_solution.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/iterator_solution1.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/iterator_solution1.cpp:2: /usr/include/c++/8/new: In function 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 9%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_solution7 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution7.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution7.dir/tutorial/seed_and_extend/solution7.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_solution7 -lrt -lz [ 9%] Linking CXX executable ../../bin/demo_tutorial_string_sets_assignment_3b_workshop_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_3b_workshop_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_3b_workshop_solution.dir/tutorial/string_sets/assignment_3b_workshop_solution.cpp.o -o ../../bin/demo_tutorial_string_sets_assignment_3b_workshop_solution -lrt -lz [ 9%] Linking CXX executable ../../bin/demo_tutorial_rnaseq_genequant_solution1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_rnaseq_genequant_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_rnaseq_genequant_solution1.dir/tutorial/rnaseq/genequant_solution1.cpp.o -o ../../bin/demo_tutorial_rnaseq_genequant_solution1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 9%] Built target demo_tutorial_seed_and_extend_solution7 make -f core/demos/CMakeFiles/demo_tutorial_index_index_qgram_hash.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_qgram_hash.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_index_qgram_hash.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_index_qgram_hash make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_index_qgram_hash.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_qgram_hash.dir/build make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 9%] Built target demo_tutorial_string_sets_assignment_3b_workshop_solution make -f core/demos/CMakeFiles/demo_tutorial_index_index_qgram.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_qgram.dir/depend [ 9%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_index_qgram_hash.dir/tutorial/index/index_qgram_hash.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_index_qgram_hash.dir/tutorial/index/index_qgram_hash.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_qgram_hash.cpp make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_index_qgram.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_index_qgram make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_index_qgram.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_qgram.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 9%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_index_qgram.dir/tutorial/index/index_qgram.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_index_qgram.dir/tutorial/index/index_qgram.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_qgram.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 9%] Built target demo_tutorial_rnaseq_genequant_solution1 make -f core/demos/CMakeFiles/demo_tutorial_index_index_preorder.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_preorder.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_index_preorder.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_index_preorder make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_index_preorder.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_preorder.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 9%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_index_preorder.dir/tutorial/index/index_preorder.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_index_preorder.dir/tutorial/index/index_preorder.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_preorder.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example2.cpp:4: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example2.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_search.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:573:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_search.cpp:2: /usr/include/c++/8/new: In function 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 9%] Linking CXX executable ../../bin/demo_tutorial_rnaseq_genequant_solution2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_rnaseq_genequant_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_rnaseq_genequant_solution2.dir/tutorial/rnaseq/genequant_solution2.cpp.o -o ../../bin/demo_tutorial_rnaseq_genequant_solution2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 9%] Built target demo_tutorial_rnaseq_genequant_solution2 make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example5.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example5.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_example5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_example5 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example5.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example5.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 9%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_example5.dir/tutorial/sequence_io/example5.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_example5.dir/tutorial/sequence_io/example5.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example5.cpp [ 9%] Linking CXX executable ../../bin/demo_tutorial_rnaseq_genequant_assignment3 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_rnaseq_genequant_assignment3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_rnaseq_genequant_assignment3.dir/tutorial/rnaseq/genequant_assignment3.cpp.o -o ../../bin/demo_tutorial_rnaseq_genequant_assignment3 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 9%] Built target demo_tutorial_rnaseq_genequant_assignment3 make -f core/demos/CMakeFiles/demo_tutorial_index_index_assignment6.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_assignment6.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_index_assignment6.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_index_assignment6 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_index_assignment6.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_assignment6.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 9%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_index_assignment6.dir/tutorial/index/index_assignment6.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_index_assignment6.dir/tutorial/index/index_assignment6.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment6.cpp [ 10%] Linking CXX executable ../../bin/demo_tutorial_index_index_search cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_index_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_index_search.dir/tutorial/index/index_search.cpp.o -o ../../bin/demo_tutorial_index_index_search -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 10%] Built target demo_tutorial_index_index_search make -f core/demos/CMakeFiles/demo_tutorial_sequence_replace_as.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_replace_as.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_replace_as.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_replace_as make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_replace_as.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_replace_as.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 10%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_replace_as.dir/tutorial/sequence/replace_as.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_replace_as.dir/tutorial/sequence/replace_as.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence/replace_as.cpp [ 10%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_example2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_example2.dir/tutorial/sequence_io/example2.cpp.o -o ../../bin/demo_tutorial_sequence_io_example2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 10%] Built target demo_tutorial_sequence_io_example2 make -f core/demos/CMakeFiles/demo_tutorial_index_index_assignment5.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_assignment5.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_index_assignment5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_index_assignment5 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_index_assignment5.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_assignment5.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_index_assignment5.dir/tutorial/index/index_assignment5.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_index_assignment5.dir/tutorial/index/index_assignment5.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment5.cpp [ 11%] Linking CXX executable ../../bin/demo_tutorial_index_index_qgram_hash cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_index_qgram_hash.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_index_qgram_hash.dir/tutorial/index/index_qgram_hash.cpp.o -o ../../bin/demo_tutorial_index_index_qgram_hash -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Built target demo_tutorial_index_index_qgram_hash make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution5.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution5.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_rnaseq_genequant_solution5 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution5.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution5.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Building CXX object core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution5.dir/tutorial/rnaseq/genequant_solution5.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_rnaseq_genequant_solution5.dir/tutorial/rnaseq/genequant_solution5.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution5.cpp [ 11%] Linking CXX executable ../../bin/demo_tutorial_sequence_replace_as cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_replace_as.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_replace_as.dir/tutorial/sequence/replace_as.cpp.o -o ../../bin/demo_tutorial_sequence_replace_as -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Built target demo_tutorial_sequence_replace_as make -f core/demos/CMakeFiles/demo_tutorial_index_index_assignment3.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_assignment3.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_index_assignment3.dir/DependInfo.cmake --color= [ 11%] Linking CXX executable ../../bin/demo_tutorial_index_index_qgram cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_index_qgram.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_index_qgram.dir/tutorial/index/index_qgram.cpp.o -o ../../bin/demo_tutorial_index_index_qgram -lrt -lz Scanning dependencies of target demo_tutorial_index_index_assignment3 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_index_assignment3.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_assignment3.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_index_assignment3.dir/tutorial/index/index_assignment3.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_index_assignment3.dir/tutorial/index/index_assignment3.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment3.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Built target demo_tutorial_index_index_qgram make -f core/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make core/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_graph_solution_1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build.make core/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Building CXX object core/demos/CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/graph/solution_1.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_preorder.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:573:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_preorder.cpp:2: /usr/include/c++/8/new: In function 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 11%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_example5 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_example5.dir/tutorial/sequence_io/example5.cpp.o -o ../../bin/demo_tutorial_sequence_io_example5 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Built target demo_tutorial_sequence_io_example5 make -f core/demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make core/demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_graph_graph_hmm make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build.make core/demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Building CXX object core/demos/CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/graph/graph_hmm.cpp [ 11%] Linking CXX executable ../../bin/demo_tutorial_index_index_preorder cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_index_preorder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_index_preorder.dir/tutorial/index/index_preorder.cpp.o -o ../../bin/demo_tutorial_index_index_preorder -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Built target demo_tutorial_index_index_preorder make -f core/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make core/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_graph_graph_dijkstra make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build.make core/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Building CXX object core/demos/CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/graph/graph_dijkstra.cpp [ 11%] Linking CXX executable ../../bin/demo_tutorial_index_index_assignment5 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_index_assignment5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_index_assignment5.dir/tutorial/index/index_assignment5.cpp.o -o ../../bin/demo_tutorial_index_index_assignment5 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Built target demo_tutorial_index_index_assignment5 make -f core/demos/CMakeFiles/demo_tutorial_find_find_index.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_index.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_find_find_index.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_find_find_index make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_find_find_index.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_index.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Building CXX object core/demos/CMakeFiles/demo_tutorial_find_find_index.dir/tutorial/find/find_index.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_find_find_index.dir/tutorial/find/find_index.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_index.cpp [ 11%] Linking CXX executable ../../bin/demo_tutorial_graph_solution_1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_solution_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_graph_solution_1.dir/tutorial/graph/solution_1.cpp.o -o ../../bin/demo_tutorial_graph_solution_1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Linking CXX executable ../../bin/demo_tutorial_index_index_assignment6 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_index_assignment6.dir/link.txt --verbose=1 [ 11%] Built target demo_tutorial_graph_solution_1 make -f core/demos/CMakeFiles/demo_tutorial_find_find_assignment2.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_assignment2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_find_find_assignment2.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_index_assignment6.dir/tutorial/index/index_assignment6.cpp.o -o ../../bin/demo_tutorial_index_index_assignment6 -lrt -lz Scanning dependencies of target demo_tutorial_find_find_assignment2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_find_find_assignment2.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_assignment2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Building CXX object core/demos/CMakeFiles/demo_tutorial_find_find_assignment2.dir/tutorial/find/find_assignment2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_find_find_assignment2.dir/tutorial/find/find_assignment2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_assignment2.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Built target demo_tutorial_index_index_assignment6 make -f core/demos/CMakeFiles/demo_tutorial_find_find_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_assignment1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_find_find_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_find_find_assignment1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_find_find_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_assignment1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Building CXX object core/demos/CMakeFiles/demo_tutorial_find_find_assignment1.dir/tutorial/find/find_assignment1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_find_find_assignment1.dir/tutorial/find/find_assignment1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_assignment1.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment3.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:573:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment3.cpp:2: /usr/include/c++/8/new: In function 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 11%] Linking CXX executable ../../bin/demo_tutorial_index_index_assignment3 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_index_assignment3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_index_assignment3.dir/tutorial/index/index_assignment3.cpp.o -o ../../bin/demo_tutorial_index_index_assignment3 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 11%] Built target demo_tutorial_index_index_assignment3 make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution3.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution3.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_rnaseq_genequant_solution3 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution3.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution3.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 12%] Building CXX object core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution3.dir/tutorial/rnaseq/genequant_solution3.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_rnaseq_genequant_solution3.dir/tutorial/rnaseq/genequant_solution3.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution3.cpp [ 12%] Linking CXX executable ../../bin/demo_tutorial_graph_graph_hmm cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_graph_hmm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_graph_graph_hmm.dir/tutorial/graph/graph_hmm.cpp.o -o ../../bin/demo_tutorial_graph_graph_hmm -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 12%] Built target demo_tutorial_graph_graph_hmm make -f core/demos/CMakeFiles/demo_tutorial_find_find_exact.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_exact.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_find_find_exact.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_find_find_exact make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_find_find_exact.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_exact.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 12%] Building CXX object core/demos/CMakeFiles/demo_tutorial_find_find_exact.dir/tutorial/find/find_exact.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_find_find_exact.dir/tutorial/find/find_exact.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_exact.cpp [ 12%] Linking CXX executable ../../bin/demo_tutorial_find_find_assignment2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_find_find_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_find_find_assignment2.dir/tutorial/find/find_assignment2.cpp.o -o ../../bin/demo_tutorial_find_find_assignment2 -lrt -lz [ 12%] Linking CXX executable ../../bin/demo_tutorial_find_find_assignment1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_find_find_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_find_find_assignment1.dir/tutorial/find/find_assignment1.cpp.o -o ../../bin/demo_tutorial_find_find_assignment1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 12%] Built target demo_tutorial_find_find_assignment2 make -f core/demos/CMakeFiles/demo_tutorial_basics_swap.dir/build.make core/demos/CMakeFiles/demo_tutorial_basics_swap.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_basics_swap.dir/DependInfo.cmake --color= [ 12%] Built target demo_tutorial_find_find_assignment1 make -f core/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make core/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_basics_swap make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_basics_swap.dir/build.make core/demos/CMakeFiles/demo_tutorial_basics_swap.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_basics_show_alphabets make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build.make core/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 12%] Building CXX object core/demos/CMakeFiles/demo_tutorial_basics_swap.dir/tutorial/basics/swap.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_basics_swap.dir/tutorial/basics/swap.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/basics/swap.cpp [ 12%] Building CXX object core/demos/CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/basics/show_alphabets.cpp [ 12%] Linking CXX executable ../../bin/demo_tutorial_index_iterator_solution1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterator_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_iterator_solution1.dir/tutorial/index/iterator_solution1.cpp.o -o ../../bin/demo_tutorial_index_iterator_solution1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 12%] Built target demo_tutorial_index_iterator_solution1 make -f core/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make core/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_basics_allocator make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build.make core/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 13%] Building CXX object core/demos/CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/basics/allocator.cpp [ 14%] Linking CXX executable ../../bin/demo_tutorial_graph_graph_dijkstra cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_graph_graph_dijkstra.dir/tutorial/graph/graph_dijkstra.cpp.o -o ../../bin/demo_tutorial_graph_graph_dijkstra -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 14%] Built target demo_tutorial_graph_graph_dijkstra make -f core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_4_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_4_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_4_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_annotation_store_assignment_4_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_4_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_4_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 14%] Building CXX object core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_4_solution.dir/tutorial/annotation_store/assignment_4_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_annotation_store_assignment_4_solution.dir/tutorial/annotation_store/assignment_4_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_4_solution.cpp [ 14%] Linking CXX executable ../../bin/demo_tutorial_find_find_index cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_find_find_index.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_find_find_index.dir/tutorial/find/find_index.cpp.o -o ../../bin/demo_tutorial_find_find_index -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 14%] Built target demo_tutorial_find_find_index make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example9.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example9.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_example9.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_example9 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example9.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example9.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 14%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_example9.dir/tutorial/sequence_io/example9.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_example9.dir/tutorial/sequence_io/example9.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example9.cpp [ 14%] Linking CXX executable ../../bin/demo_tutorial_basics_show_alphabets cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_show_alphabets.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_basics_show_alphabets.dir/tutorial/basics/show_alphabets.cpp.o -o ../../bin/demo_tutorial_basics_show_alphabets -lrt -lz [ 14%] Linking CXX executable ../../bin/demo_tutorial_find_find_exact cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_find_find_exact.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_find_find_exact.dir/tutorial/find/find_exact.cpp.o -o ../../bin/demo_tutorial_find_find_exact -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 14%] Built target demo_tutorial_basics_show_alphabets make -f core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_3_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_3_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_3_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 14%] Built target demo_tutorial_find_find_exact make -f core/demos/CMakeFiles/demo_tutorial_lexical_casting_solution1.dir/build.make core/demos/CMakeFiles/demo_tutorial_lexical_casting_solution1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_lexical_casting_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_annotation_store_assignment_3_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_3_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_3_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 14%] Building CXX object core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_3_solution.dir/tutorial/annotation_store/assignment_3_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_annotation_store_assignment_3_solution.dir/tutorial/annotation_store/assignment_3_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_3_solution.cpp Scanning dependencies of target demo_tutorial_lexical_casting_solution1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_lexical_casting_solution1.dir/build.make core/demos/CMakeFiles/demo_tutorial_lexical_casting_solution1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 14%] Building CXX object core/demos/CMakeFiles/demo_tutorial_lexical_casting_solution1.dir/tutorial/lexical_casting/solution1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_lexical_casting_solution1.dir/tutorial/lexical_casting/solution1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/lexical_casting/solution1.cpp [ 14%] Linking CXX executable ../../bin/demo_tutorial_basics_allocator cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_allocator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_basics_allocator.dir/tutorial/basics/allocator.cpp.o -o ../../bin/demo_tutorial_basics_allocator -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 14%] Built target demo_tutorial_basics_allocator make -f core/demos/CMakeFiles/demo_tutorial_index_iterator_solution2.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_iterator_solution2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_iterator_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_iterator_solution2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_iterator_solution2.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_iterator_solution2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 14%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_iterator_solution2.dir/tutorial/index/iterator_solution2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_iterator_solution2.dir/tutorial/index/iterator_solution2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/iterator_solution2.cpp [ 15%] Linking CXX executable ../../bin/demo_tutorial_basics_swap cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_swap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_basics_swap.dir/tutorial/basics/swap.cpp.o -o ../../bin/demo_tutorial_basics_swap -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target demo_tutorial_basics_swap make -f core/demos/CMakeFiles/demo_index_index_textAt_indexText_saAt_indexRequire.dir/build.make core/demos/CMakeFiles/demo_index_index_textAt_indexText_saAt_indexRequire.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_textAt_indexText_saAt_indexRequire.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_textAt_indexText_saAt_indexRequire make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_textAt_indexText_saAt_indexRequire.dir/build.make core/demos/CMakeFiles/demo_index_index_textAt_indexText_saAt_indexRequire.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Building CXX object core/demos/CMakeFiles/demo_index_index_textAt_indexText_saAt_indexRequire.dir/index/index_textAt_indexText_saAt_indexRequire.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_textAt_indexText_saAt_indexRequire.dir/index/index_textAt_indexText_saAt_indexRequire.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_textAt_indexText_saAt_indexRequire.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:36, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution5.cpp:2: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution5.cpp:1: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 15%] Linking CXX executable ../../bin/demo_tutorial_lexical_casting_solution1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_lexical_casting_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_lexical_casting_solution1.dir/tutorial/lexical_casting/solution1.cpp.o -o ../../bin/demo_tutorial_lexical_casting_solution1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target demo_tutorial_lexical_casting_solution1 make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step4.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step4.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5_step4.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution5.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution5.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/iterator_solution2.cpp:2: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:573:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/iterator_solution2.cpp:1: /usr/include/c++/8/new: In function 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_4_solution.cpp:5: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_4_solution.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Linking CXX executable ../../bin/demo_index_index_textAt_indexText_saAt_indexRequire cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_textAt_indexText_saAt_indexRequire.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_textAt_indexText_saAt_indexRequire.dir/index/index_textAt_indexText_saAt_indexRequire.cpp.o -o ../../bin/demo_index_index_textAt_indexText_saAt_indexRequire -lrt -lz In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example9.cpp:4: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example9.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target demo_index_index_textAt_indexText_saAt_indexRequire make -f core/demos/CMakeFiles/demo_index_index_qgram.dir/build.make core/demos/CMakeFiles/demo_index_index_qgram.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_qgram.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_qgram make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_qgram.dir/build.make core/demos/CMakeFiles/demo_index_index_qgram.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Building CXX object core/demos/CMakeFiles/demo_index_index_qgram.dir/index/index_qgram.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_qgram.dir/index/index_qgram.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_qgram.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_3_solution.cpp:5: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_3_solution.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Linking CXX executable ../../bin/demo_tutorial_index_iterator_solution2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_iterator_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_iterator_solution2.dir/tutorial/index/iterator_solution2.cpp.o -o ../../bin/demo_tutorial_index_iterator_solution2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target demo_tutorial_index_iterator_solution2 make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_msa_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_msa_assignment1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_msa_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_msa_assignment1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_msa_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_msa_assignment1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_msa_assignment1.dir/tutorial/alignments/alignment_msa_assignment1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_msa_assignment1.dir/tutorial/alignments/alignment_msa_assignment1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_msa_assignment1.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:36, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution3.cpp:2: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution3.cpp:1: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution3.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution3.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_example9 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example9.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_example9.dir/tutorial/sequence_io/example9.cpp.o -o ../../bin/demo_tutorial_sequence_io_example9 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target demo_tutorial_sequence_io_example9 make -f core/demos/CMakeFiles/demo_index_index_iterator_short.dir/build.make core/demos/CMakeFiles/demo_index_index_iterator_short.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_iterator_short.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_iterator_short make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_iterator_short.dir/build.make core/demos/CMakeFiles/demo_index_index_iterator_short.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Building CXX object core/demos/CMakeFiles/demo_index_index_iterator_short.dir/index/index_iterator_short.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_iterator_short.dir/index/index_iterator_short.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_iterator_short.cpp [ 15%] Linking CXX executable ../../bin/demo_tutorial_annotation_store_assignment_4_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_annotation_store_assignment_4_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_annotation_store_assignment_4_solution.dir/tutorial/annotation_store/assignment_4_solution.cpp.o -o ../../bin/demo_tutorial_annotation_store_assignment_4_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target demo_tutorial_annotation_store_assignment_4_solution make -f core/demos/CMakeFiles/demo_tutorial_sequence_count_generic_characters.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_count_generic_characters.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_count_generic_characters.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_count_generic_characters make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_count_generic_characters.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_count_generic_characters.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_count_generic_characters.dir/tutorial/sequence/count_generic_characters.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_count_generic_characters.dir/tutorial/sequence/count_generic_characters.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence/count_generic_characters.cpp [ 15%] Linking CXX executable ../../bin/demo_tutorial_annotation_store_assignment_3_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_annotation_store_assignment_3_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_annotation_store_assignment_3_solution.dir/tutorial/annotation_store/assignment_3_solution.cpp.o -o ../../bin/demo_tutorial_annotation_store_assignment_3_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target demo_tutorial_annotation_store_assignment_3_solution make -f core/demos/CMakeFiles/demo_index_index_begin_atEnd_representative.dir/build.make core/demos/CMakeFiles/demo_index_index_begin_atEnd_representative.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_begin_atEnd_representative.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_begin_atEnd_representative make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_begin_atEnd_representative.dir/build.make core/demos/CMakeFiles/demo_index_index_begin_atEnd_representative.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Building CXX object core/demos/CMakeFiles/demo_index_index_begin_atEnd_representative.dir/index/index_begin_atEnd_representative.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_begin_atEnd_representative.dir/index/index_begin_atEnd_representative.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_begin_atEnd_representative.cpp [ 15%] Linking CXX executable ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step4.cpp.o -o ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4 -lrt -lz [ 15%] Linking CXX executable ../../bin/demo_index_index_qgram cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_qgram.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step4 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_qgram.dir/index/index_qgram.cpp.o -o ../../bin/demo_index_index_qgram -lrt -lz make -f core/demos/CMakeFiles/demo_find_approx.dir/build.make core/demos/CMakeFiles/demo_find_approx.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_find_approx.dir/DependInfo.cmake --color= Scanning dependencies of target demo_find_approx make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_find_approx.dir/build.make core/demos/CMakeFiles/demo_find_approx.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Building CXX object core/demos/CMakeFiles/demo_find_approx.dir/find_approx.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_find_approx.dir/find_approx.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/find_approx.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target demo_index_index_qgram make -f core/demos/CMakeFiles/demo_graph_algorithms_dijkstra.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_dijkstra.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_dijkstra.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_dijkstra make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_dijkstra.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_dijkstra.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_dijkstra.dir/graph_algorithms/dijkstra.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_dijkstra.dir/graph_algorithms/dijkstra.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/dijkstra.cpp [ 15%] Linking CXX executable ../../bin/demo_tutorial_sequence_count_generic_characters cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_count_generic_characters.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_count_generic_characters.dir/tutorial/sequence/count_generic_characters.cpp.o -o ../../bin/demo_tutorial_sequence_count_generic_characters -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target demo_tutorial_sequence_count_generic_characters make -f core/demos/CMakeFiles/demo_misc_get_terminal_size.dir/build.make core/demos/CMakeFiles/demo_misc_get_terminal_size.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_misc_get_terminal_size.dir/DependInfo.cmake --color= Scanning dependencies of target demo_misc_get_terminal_size make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_misc_get_terminal_size.dir/build.make core/demos/CMakeFiles/demo_misc_get_terminal_size.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 15%] Building CXX object core/demos/CMakeFiles/demo_misc_get_terminal_size.dir/misc/get_terminal_size.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_misc_get_terminal_size.dir/misc/get_terminal_size.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/misc/get_terminal_size.cpp [ 16%] Linking CXX executable ../../bin/demo_misc_get_terminal_size cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_misc_get_terminal_size.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_misc_get_terminal_size.dir/misc/get_terminal_size.cpp.o -o ../../bin/demo_misc_get_terminal_size -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 16%] Built target demo_misc_get_terminal_size make -f core/demos/CMakeFiles/demo_index_index_finder.dir/build.make core/demos/CMakeFiles/demo_index_index_finder.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_finder.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_finder make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_finder.dir/build.make core/demos/CMakeFiles/demo_index_index_finder.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 17%] Building CXX object core/demos/CMakeFiles/demo_index_index_finder.dir/index/index_finder.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_finder.dir/index/index_finder.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_finder.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_iterator_short.cpp:2: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:573:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_iterator_short.cpp:1: /usr/include/c++/8/new: In function 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 17%] Linking CXX executable ../../bin/demo_find_approx cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_find_approx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_find_approx.dir/find_approx.cpp.o -o ../../bin/demo_find_approx -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 17%] Built target demo_find_approx make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 18%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step3.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step3.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5_step3.cpp [ 18%] Linking CXX executable ../../bin/demo_tutorial_rnaseq_genequant_solution5 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_rnaseq_genequant_solution5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_rnaseq_genequant_solution5.dir/tutorial/rnaseq/genequant_solution5.cpp.o -o ../../bin/demo_tutorial_rnaseq_genequant_solution5 -lrt -lz [ 19%] Linking CXX executable ../../bin/demo_index_index_iterator_short cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_iterator_short.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_iterator_short.dir/index/index_iterator_short.cpp.o -o ../../bin/demo_index_index_iterator_short -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 19%] Built target demo_index_index_iterator_short make -f core/demos/CMakeFiles/demo_index_index_mummy.dir/build.make core/demos/CMakeFiles/demo_index_index_mummy.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_mummy.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 19%] Built target demo_tutorial_rnaseq_genequant_solution5 make -f core/demos/CMakeFiles/demo_benchmark_stream_write.dir/build.make core/demos/CMakeFiles/demo_benchmark_stream_write.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_benchmark_stream_write.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_mummy make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_mummy.dir/build.make core/demos/CMakeFiles/demo_index_index_mummy.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 19%] Building CXX object core/demos/CMakeFiles/demo_index_index_mummy.dir/index/index_mummy.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_mummy.dir/index/index_mummy.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_mummy.cpp Scanning dependencies of target demo_benchmark_stream_write make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_benchmark_stream_write.dir/build.make core/demos/CMakeFiles/demo_benchmark_stream_write.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 19%] Building CXX object core/demos/CMakeFiles/demo_benchmark_stream_write.dir/benchmark_stream_write.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_benchmark_stream_write.dir/benchmark_stream_write.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/benchmark_stream_write.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_begin_atEnd_representative.cpp:1: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:573:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_begin_atEnd_representative.cpp:1: /usr/include/c++/8/new: In function 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 20%] Linking CXX executable ../../bin/demo_index_index_begin_atEnd_representative cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_begin_atEnd_representative.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_begin_atEnd_representative.dir/index/index_begin_atEnd_representative.cpp.o -o ../../bin/demo_index_index_begin_atEnd_representative -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 20%] Built target demo_index_index_begin_atEnd_representative make -f core/demos/CMakeFiles/demo_seeds_seeds_chaining.dir/build.make core/demos/CMakeFiles/demo_seeds_seeds_chaining.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_seeds_seeds_chaining.dir/DependInfo.cmake --color= Scanning dependencies of target demo_seeds_seeds_chaining make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_seeds_seeds_chaining.dir/build.make core/demos/CMakeFiles/demo_seeds_seeds_chaining.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 21%] Building CXX object core/demos/CMakeFiles/demo_seeds_seeds_chaining.dir/seeds/seeds_chaining.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_seeds_seeds_chaining.dir/seeds/seeds_chaining.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/seeds/seeds_chaining.cpp [ 21%] Linking CXX executable ../../bin/demo_graph_algorithms_dijkstra cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_dijkstra.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_dijkstra.dir/graph_algorithms/dijkstra.cpp.o -o ../../bin/demo_graph_algorithms_dijkstra -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 21%] Built target demo_graph_algorithms_dijkstra make -f core/demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make core/demos/CMakeFiles/demo_howto_scores_init_score.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_howto_scores_init_score.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_scores_init_score make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_howto_scores_init_score.dir/build.make core/demos/CMakeFiles/demo_howto_scores_init_score.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 22%] Building CXX object core/demos/CMakeFiles/demo_howto_scores_init_score.dir/howto/scores/init_score.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_howto_scores_init_score.dir/howto/scores/init_score.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/howto/scores/init_score.cpp [ 22%] Linking CXX executable ../../bin/demo_index_index_finder cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_finder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_finder.dir/index/index_finder.cpp.o -o ../../bin/demo_index_index_finder -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 22%] Built target demo_index_index_finder make -f core/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make core/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_filter_similar_sequences make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build.make core/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 22%] Building CXX object core/demos/CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/howto/filter_similar_sequences.cpp [ 22%] Linking CXX executable ../../bin/demo_howto_scores_init_score cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_scores_init_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_howto_scores_init_score.dir/howto/scores/init_score.cpp.o -o ../../bin/demo_howto_scores_init_score -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 22%] Built target demo_howto_scores_init_score make -f core/demos/CMakeFiles/demo_sequence_suffix.dir/build.make core/demos/CMakeFiles/demo_sequence_suffix.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_sequence_suffix.dir/DependInfo.cmake --color= Scanning dependencies of target demo_sequence_suffix make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_sequence_suffix.dir/build.make core/demos/CMakeFiles/demo_sequence_suffix.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 22%] Building CXX object core/demos/CMakeFiles/demo_sequence_suffix.dir/sequence/suffix.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_sequence_suffix.dir/sequence/suffix.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/sequence/suffix.cpp [ 22%] Linking CXX executable ../../bin/demo_tutorial_rnaseq_genequant_solution3 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_rnaseq_genequant_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_rnaseq_genequant_solution3.dir/tutorial/rnaseq/genequant_solution3.cpp.o -o ../../bin/demo_tutorial_rnaseq_genequant_solution3 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 22%] Built target demo_tutorial_rnaseq_genequant_solution3 make -f core/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make core/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_efficiently_import_sequences make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build.make core/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 22%] Building CXX object core/demos/CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/howto/efficiently_import_sequences.cpp [ 22%] Linking CXX executable ../../bin/demo_seeds_seeds_chaining cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_seeds_seeds_chaining.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_seeds_seeds_chaining.dir/seeds/seeds_chaining.cpp.o -o ../../bin/demo_seeds_seeds_chaining -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 22%] Built target demo_seeds_seeds_chaining make -f core/demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make core/demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/DependInfo.cmake --color= [ 23%] Linking CXX executable ../../bin/demo_sequence_suffix cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sequence_suffix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_sequence_suffix.dir/sequence/suffix.cpp.o -o ../../bin/demo_sequence_suffix -lrt -lz Scanning dependencies of target demo_tutorial_iterators_sequence_iterator_demo make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build.make core/demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 23%] Building CXX object core/demos/CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/iterators/sequence_iterator_demo.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 23%] Built target demo_sequence_suffix make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_specialised.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_specialised.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_specialised.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_global_specialised make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_specialised.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_specialised.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 23%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_specialised.dir/tutorial/alignments/alignment_global_specialised.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_global_specialised.dir/tutorial/alignments/alignment_global_specialised.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_specialised.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/benchmark_stream_write.cpp:49: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/seqan-1.4.2+dfsg/core/demos/benchmark_stream_write.cpp:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 23%] Linking CXX executable ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step3.cpp.o -o ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 23%] Built target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step3 make -f core/demos/CMakeFiles/demo_howto_cmdparser_example.dir/build.make core/demos/CMakeFiles/demo_howto_cmdparser_example.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_howto_cmdparser_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_cmdparser_example make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_howto_cmdparser_example.dir/build.make core/demos/CMakeFiles/demo_howto_cmdparser_example.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 24%] Building CXX object core/demos/CMakeFiles/demo_howto_cmdparser_example.dir/howto/cmdparser_example.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_howto_cmdparser_example.dir/howto/cmdparser_example.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/howto/cmdparser_example.cpp [ 25%] Linking CXX executable ../../bin/demo_tutorial_iterators_sequence_iterator_demo cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_iterators_sequence_iterator_demo.dir/tutorial/iterators/sequence_iterator_demo.cpp.o -o ../../bin/demo_tutorial_iterators_sequence_iterator_demo -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 25%] Built target demo_tutorial_iterators_sequence_iterator_demo make -f core/demos/CMakeFiles/demo_basic_metaprogramming_control.dir/build.make core/demos/CMakeFiles/demo_basic_metaprogramming_control.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_basic_metaprogramming_control.dir/DependInfo.cmake --color= Scanning dependencies of target demo_basic_metaprogramming_control make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_basic_metaprogramming_control.dir/build.make core/demos/CMakeFiles/demo_basic_metaprogramming_control.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 25%] Building CXX object core/demos/CMakeFiles/demo_basic_metaprogramming_control.dir/basic/metaprogramming_control.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_basic_metaprogramming_control.dir/basic/metaprogramming_control.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/basic/metaprogramming_control.cpp [ 25%] Linking CXX executable ../../bin/demo_basic_metaprogramming_control cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_basic_metaprogramming_control.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_basic_metaprogramming_control.dir/basic/metaprogramming_control.cpp.o -o ../../bin/demo_basic_metaprogramming_control -lrt -lz [ 25%] Linking CXX executable ../../bin/demo_benchmark_stream_write cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_benchmark_stream_write.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_benchmark_stream_write.dir/benchmark_stream_write.cpp.o -o ../../bin/demo_benchmark_stream_write -lrt -lz [ 25%] Built target demo_basic_metaprogramming_control make -f core/demos/CMakeFiles/demo_index_index_mums.dir/build.make core/demos/CMakeFiles/demo_index_index_mums.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_mums.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_mums make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_mums.dir/build.make core/demos/CMakeFiles/demo_index_index_mums.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 25%] Building CXX object core/demos/CMakeFiles/demo_index_index_mums.dir/index/index_mums.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_mums.dir/index/index_mums.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_mums.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 25%] Built target demo_benchmark_stream_write make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_solution5.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_solution5.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_solution5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_solution5 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_solution5.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_solution5.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 26%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_solution5.dir/tutorial/sequence_io/solution5.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_solution5.dir/tutorial/sequence_io/solution5.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution5.cpp [ 27%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_global_specialised cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_global_specialised.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_global_specialised.dir/tutorial/alignments/alignment_global_specialised.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_global_specialised -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 27%] Built target demo_tutorial_alignments_alignment_global_specialised make -f core/demos/CMakeFiles/demo_find_wild.dir/build.make core/demos/CMakeFiles/demo_find_wild.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_find_wild.dir/DependInfo.cmake --color= Scanning dependencies of target demo_find_wild make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_find_wild.dir/build.make core/demos/CMakeFiles/demo_find_wild.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 27%] Building CXX object core/demos/CMakeFiles/demo_find_wild.dir/find_wild.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_find_wild.dir/find_wild.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/find_wild.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/howto/filter_similar_sequences.cpp:4: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:39, from /build/seqan-1.4.2+dfsg/core/demos/howto/filter_similar_sequences.cpp:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 27%] Linking CXX executable ../../bin/demo_howto_efficiently_import_sequences cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_efficiently_import_sequences.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_howto_efficiently_import_sequences.dir/howto/efficiently_import_sequences.cpp.o -o ../../bin/demo_howto_efficiently_import_sequences -lrt -lz [ 27%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_msa_assignment1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_msa_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_msa_assignment1.dir/tutorial/alignments/alignment_msa_assignment1.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_msa_assignment1 -lrt -lz [ 27%] Built target demo_howto_efficiently_import_sequences make -f core/demos/CMakeFiles/demo_seeds.dir/build.make core/demos/CMakeFiles/demo_seeds.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_seeds.dir/DependInfo.cmake --color= Scanning dependencies of target demo_seeds make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_seeds.dir/build.make core/demos/CMakeFiles/demo_seeds.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 27%] Building CXX object core/demos/CMakeFiles/demo_seeds.dir/seeds.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_seeds.dir/seeds.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/seeds.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 27%] Built target demo_tutorial_alignments_alignment_msa_assignment1 make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_solution1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 27%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/solution1.cpp [ 27%] Linking CXX executable ../../bin/demo_howto_cmdparser_example cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_cmdparser_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_howto_cmdparser_example.dir/howto/cmdparser_example.cpp.o -o ../../bin/demo_howto_cmdparser_example -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 27%] Built target demo_howto_cmdparser_example make -f core/demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make core/demos/CMakeFiles/demo_howto_scores_load_score.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_howto_scores_load_score.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_scores_load_score make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_howto_scores_load_score.dir/build.make core/demos/CMakeFiles/demo_howto_scores_load_score.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 27%] Building CXX object core/demos/CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/howto/scores/load_score.cpp [ 27%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_solution1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution1.dir/tutorial/seed_and_extend/solution1.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_solution1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 27%] Built target demo_tutorial_seed_and_extend_solution1 make -f core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_hint.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_hint.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_hint.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_segments_assignment_hint make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_hint.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_hint.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 27%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_hint.dir/tutorial/sequences/segments_assignment_hint.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequences_segments_assignment_hint.dir/tutorial/sequences/segments_assignment_hint.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequences/segments_assignment_hint.cpp [ 28%] Linking CXX executable ../../bin/demo_find_wild cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_find_wild.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_find_wild.dir/find_wild.cpp.o -o ../../bin/demo_find_wild -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 28%] Built target demo_find_wild make -f core/demos/CMakeFiles/demo_graph_align_graph_align.dir/build.make core/demos/CMakeFiles/demo_graph_align_graph_align.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_align_graph_align.dir/DependInfo.cmake --color= [ 28%] Linking CXX executable ../../bin/demo_howto_filter_similar_sequences cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_filter_similar_sequences.dir/link.txt --verbose=1 Scanning dependencies of target demo_graph_align_graph_align make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_align_graph_align.dir/build.make core/demos/CMakeFiles/demo_graph_align_graph_align.dir/build /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_howto_filter_similar_sequences.dir/howto/filter_similar_sequences.cpp.o -o ../../bin/demo_howto_filter_similar_sequences -lrt -lz make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 28%] Building CXX object core/demos/CMakeFiles/demo_graph_align_graph_align.dir/graph_align/graph_align.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_align_graph_align.dir/graph_align/graph_align.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_align/graph_align.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 28%] Built target demo_howto_filter_similar_sequences make -f core/demos/CMakeFiles/demo_align_integrate_align.dir/build.make core/demos/CMakeFiles/demo_align_integrate_align.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_align_integrate_align.dir/DependInfo.cmake --color= Scanning dependencies of target demo_align_integrate_align make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_align_integrate_align.dir/build.make core/demos/CMakeFiles/demo_align_integrate_align.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 28%] Building CXX object core/demos/CMakeFiles/demo_align_integrate_align.dir/align/integrate_align.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_align_integrate_align.dir/align/integrate_align.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/align/integrate_align.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution5.cpp:1: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:44, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution5.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Linking CXX executable ../../bin/demo_seeds cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_seeds.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_seeds.dir/seeds.cpp.o -o ../../bin/demo_seeds -lrt -lz [ 28%] Linking CXX executable ../../bin/demo_howto_scores_load_score cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_scores_load_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_howto_scores_load_score.dir/howto/scores/load_score.cpp.o -o ../../bin/demo_howto_scores_load_score -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 28%] Built target demo_seeds make -f core/demos/CMakeFiles/demo_index_mums.dir/build.make core/demos/CMakeFiles/demo_index_mums.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_mums.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_mums make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_mums.dir/build.make core/demos/CMakeFiles/demo_index_mums.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 28%] Building CXX object core/demos/CMakeFiles/demo_index_mums.dir/index_mums.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_mums.dir/index_mums.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index_mums.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 28%] Built target demo_howto_scores_load_score make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_solution2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 29%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution2.cpp [ 29%] Linking CXX executable ../../bin/demo_tutorial_sequences_segments_assignment_hint cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_segments_assignment_hint.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequences_segments_assignment_hint.dir/tutorial/sequences/segments_assignment_hint.cpp.o -o ../../bin/demo_tutorial_sequences_segments_assignment_hint -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 29%] Built target demo_tutorial_sequences_segments_assignment_hint make -f core/demos/CMakeFiles/demo_graph_algorithms_topological_sort.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_topological_sort.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_topological_sort.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_topological_sort make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_topological_sort.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_topological_sort.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 30%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_topological_sort.dir/graph_algorithms/topological_sort.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_topological_sort.dir/graph_algorithms/topological_sort.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/topological_sort.cpp [ 30%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_solution5 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution5.dir/tutorial/sequence_io/solution5.cpp.o -o ../../bin/demo_tutorial_sequence_io_solution5 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 30%] Built target demo_tutorial_sequence_io_solution5 make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_overlap.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_overlap.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_overlap.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_global_overlap make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_overlap.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_overlap.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 30%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_overlap.dir/tutorial/alignments/alignment_global_overlap.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_global_overlap.dir/tutorial/alignments/alignment_global_overlap.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_overlap.cpp [ 30%] Linking CXX executable ../../bin/demo_graph_algorithms_topological_sort cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_topological_sort.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_topological_sort.dir/graph_algorithms/topological_sort.cpp.o -o ../../bin/demo_graph_algorithms_topological_sort -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 30%] Built target demo_graph_algorithms_topological_sort make -f core/demos/CMakeFiles/demo_graph_algorithms_longest_common_subsequence.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_longest_common_subsequence.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_longest_common_subsequence.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_longest_common_subsequence make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_longest_common_subsequence.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_longest_common_subsequence.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 30%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_longest_common_subsequence.dir/graph_algorithms/longest_common_subsequence.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_longest_common_subsequence.dir/graph_algorithms/longest_common_subsequence.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/longest_common_subsequence.cpp [ 31%] Linking CXX executable ../../bin/demo_align_integrate_align cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_align_integrate_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_align_integrate_align.dir/align/integrate_align.cpp.o -o ../../bin/demo_align_integrate_align -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 31%] Built target demo_align_integrate_align make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/DependInfo.cmake --color= In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution2.cpp:4: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution2.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Scanning dependencies of target demo_tutorial_sequence_io_solution1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 31%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution1.cpp [ 31%] Linking CXX executable ../../bin/demo_graph_align_graph_align cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_align_graph_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_align_graph_align.dir/graph_align/graph_align.cpp.o -o ../../bin/demo_graph_align_graph_align -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 31%] Built target demo_graph_align_graph_align make -f core/demos/CMakeFiles/demo_tutorial_find_find_index_multiple.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_index_multiple.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_find_find_index_multiple.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_find_find_index_multiple make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_find_find_index_multiple.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_index_multiple.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 32%] Building CXX object core/demos/CMakeFiles/demo_tutorial_find_find_index_multiple.dir/tutorial/find/find_index_multiple.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_find_find_index_multiple.dir/tutorial/find/find_index_multiple.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_index_multiple.cpp [ 32%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_solution2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution2.dir/tutorial/sequence_io/solution2.cpp.o -o ../../bin/demo_tutorial_sequence_io_solution2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 32%] Built target demo_tutorial_sequence_io_solution2 make -f core/demos/CMakeFiles/demo_basic_metaprogramming_math.dir/build.make core/demos/CMakeFiles/demo_basic_metaprogramming_math.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_basic_metaprogramming_math.dir/DependInfo.cmake --color= Scanning dependencies of target demo_basic_metaprogramming_math make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_basic_metaprogramming_math.dir/build.make core/demos/CMakeFiles/demo_basic_metaprogramming_math.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 32%] Building CXX object core/demos/CMakeFiles/demo_basic_metaprogramming_math.dir/basic/metaprogramming_math.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_basic_metaprogramming_math.dir/basic/metaprogramming_math.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/basic/metaprogramming_math.cpp [ 33%] Linking CXX executable ../../bin/demo_basic_metaprogramming_math cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_basic_metaprogramming_math.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_basic_metaprogramming_math.dir/basic/metaprogramming_math.cpp.o -o ../../bin/demo_basic_metaprogramming_math -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 33%] Built target demo_basic_metaprogramming_math make -f core/demos/CMakeFiles/demo_rooted_iterator.dir/build.make core/demos/CMakeFiles/demo_rooted_iterator.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_rooted_iterator.dir/DependInfo.cmake --color= Scanning dependencies of target demo_rooted_iterator make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_rooted_iterator.dir/build.make core/demos/CMakeFiles/demo_rooted_iterator.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 33%] Building CXX object core/demos/CMakeFiles/demo_rooted_iterator.dir/rooted_iterator.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_rooted_iterator.dir/rooted_iterator.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/rooted_iterator.cpp [ 33%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_global_overlap cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_global_overlap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_global_overlap.dir/tutorial/alignments/alignment_global_overlap.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_global_overlap -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 33%] Built target demo_tutorial_alignments_alignment_global_overlap make -f core/demos/CMakeFiles/demo_index_node_predicate.dir/build.make core/demos/CMakeFiles/demo_index_node_predicate.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_node_predicate.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_node_predicate make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_node_predicate.dir/build.make core/demos/CMakeFiles/demo_index_node_predicate.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 33%] Building CXX object core/demos/CMakeFiles/demo_index_node_predicate.dir/index_node_predicate.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_node_predicate.dir/index_node_predicate.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index_node_predicate.cpp [ 33%] Linking CXX executable ../../bin/demo_graph_algorithms_longest_common_subsequence cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_longest_common_subsequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_longest_common_subsequence.dir/graph_algorithms/longest_common_subsequence.cpp.o -o ../../bin/demo_graph_algorithms_longest_common_subsequence -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 33%] Built target demo_graph_algorithms_longest_common_subsequence make -f core/demos/CMakeFiles/demo_graph_algorithms_depth_first_search.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_depth_first_search.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_depth_first_search.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_depth_first_search make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_depth_first_search.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_depth_first_search.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 33%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_depth_first_search.dir/graph_algorithms/depth_first_search.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_depth_first_search.dir/graph_algorithms/depth_first_search.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/depth_first_search.cpp [ 33%] Linking CXX executable ../../bin/demo_rooted_iterator cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_rooted_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_rooted_iterator.dir/rooted_iterator.cpp.o -o ../../bin/demo_rooted_iterator -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 33%] Built target demo_rooted_iterator make -f core/demos/CMakeFiles/demo_index_counting.dir/build.make core/demos/CMakeFiles/demo_index_counting.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_counting.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_counting make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_counting.dir/build.make core/demos/CMakeFiles/demo_index_counting.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 33%] Building CXX object core/demos/CMakeFiles/demo_index_counting.dir/index_counting.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_counting.dir/index_counting.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index_counting.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution1.cpp:4: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution1.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 34%] Linking CXX executable ../../bin/demo_graph_algorithms_depth_first_search cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_depth_first_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_depth_first_search.dir/graph_algorithms/depth_first_search.cpp.o -o ../../bin/demo_graph_algorithms_depth_first_search -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 34%] Built target demo_graph_algorithms_depth_first_search make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution4.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution4.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_rnaseq_genequant_solution4 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution4.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution4.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 34%] Building CXX object core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_solution4.dir/tutorial/rnaseq/genequant_solution4.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_rnaseq_genequant_solution4.dir/tutorial/rnaseq/genequant_solution4.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution4.cpp [ 34%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_solution1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution1.dir/tutorial/sequence_io/solution1.cpp.o -o ../../bin/demo_tutorial_sequence_io_solution1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 34%] Built target demo_tutorial_sequence_io_solution1 make -f core/demos/CMakeFiles/demo_howto_clip_alignments.dir/build.make core/demos/CMakeFiles/demo_howto_clip_alignments.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_howto_clip_alignments.dir/DependInfo.cmake --color= Scanning dependencies of target demo_howto_clip_alignments make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_howto_clip_alignments.dir/build.make core/demos/CMakeFiles/demo_howto_clip_alignments.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 34%] Building CXX object core/demos/CMakeFiles/demo_howto_clip_alignments.dir/howto/clip_alignments.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_howto_clip_alignments.dir/howto/clip_alignments.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/howto/clip_alignments.cpp [ 35%] Linking CXX executable ../../bin/demo_index_node_predicate cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_node_predicate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_node_predicate.dir/index_node_predicate.cpp.o -o ../../bin/demo_index_node_predicate -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 35%] Built target demo_index_node_predicate make -f core/demos/CMakeFiles/demo_graph_algorithms_prims_algorithm.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_prims_algorithm.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_prims_algorithm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_prims_algorithm make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_prims_algorithm.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_prims_algorithm.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 35%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_prims_algorithm.dir/graph_algorithms/prims_algorithm.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_prims_algorithm.dir/graph_algorithms/prims_algorithm.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/prims_algorithm.cpp [ 35%] Linking CXX executable ../../bin/demo_index_index_mummy cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_mummy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_mummy.dir/index/index_mummy.cpp.o -o ../../bin/demo_index_index_mummy -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 35%] Built target demo_index_index_mummy make -f core/demos/CMakeFiles/demo_graph_algorithms_dag_shortest_path.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_dag_shortest_path.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_dag_shortest_path.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_dag_shortest_path make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_dag_shortest_path.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_dag_shortest_path.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 35%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_dag_shortest_path.dir/graph_algorithms/dag_shortest_path.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_dag_shortest_path.dir/graph_algorithms/dag_shortest_path.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/dag_shortest_path.cpp [ 36%] Linking CXX executable ../../bin/demo_index_index_mums cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_mums.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_mums.dir/index/index_mums.cpp.o -o ../../bin/demo_index_index_mums -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 36%] Built target demo_index_index_mums make -f core/demos/CMakeFiles/demo_graph_algorithms_bellman_ford_algorithm.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_bellman_ford_algorithm.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_bellman_ford_algorithm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_bellman_ford_algorithm make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_bellman_ford_algorithm.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_bellman_ford_algorithm.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_bellman_ford_algorithm.dir/graph_algorithms/bellman_ford_algorithm.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_bellman_ford_algorithm.dir/graph_algorithms/bellman_ford_algorithm.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/bellman_ford_algorithm.cpp [ 37%] Linking CXX executable ../../bin/demo_howto_clip_alignments cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_howto_clip_alignments.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_howto_clip_alignments.dir/howto/clip_alignments.cpp.o -o ../../bin/demo_howto_clip_alignments -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Built target demo_howto_clip_alignments make -f core/demos/CMakeFiles/demo_graph_algorithms_ford_fulkerson_algorithm.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_ford_fulkerson_algorithm.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_ford_fulkerson_algorithm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_ford_fulkerson_algorithm make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_ford_fulkerson_algorithm.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_ford_fulkerson_algorithm.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_ford_fulkerson_algorithm.dir/graph_algorithms/ford_fulkerson_algorithm.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_ford_fulkerson_algorithm.dir/graph_algorithms/ford_fulkerson_algorithm.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/ford_fulkerson_algorithm.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index_counting.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:573:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/index_counting.cpp:2: /usr/include/c++/8/new: In function 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 37%] Linking CXX executable ../../bin/demo_graph_algorithms_prims_algorithm cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_prims_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_prims_algorithm.dir/graph_algorithms/prims_algorithm.cpp.o -o ../../bin/demo_graph_algorithms_prims_algorithm -lrt -lz [ 37%] Linking CXX executable ../../bin/demo_index_counting cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_counting.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_counting.dir/index_counting.cpp.o -o ../../bin/demo_index_counting -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Built target demo_graph_algorithms_prims_algorithm make -f core/demos/CMakeFiles/demo_tutorial_sequence_sequence_iterator_demo.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_sequence_iterator_demo.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_sequence_iterator_demo.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_sequence_iterator_demo make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_sequence_iterator_demo.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_sequence_iterator_demo.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_sequence_iterator_demo.dir/tutorial/sequence/sequence_iterator_demo.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_sequence_iterator_demo.dir/tutorial/sequence/sequence_iterator_demo.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence/sequence_iterator_demo.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Built target demo_index_counting make -f core/demos/CMakeFiles/demo_basic_metaprogramming_switch.dir/build.make core/demos/CMakeFiles/demo_basic_metaprogramming_switch.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_basic_metaprogramming_switch.dir/DependInfo.cmake --color= Scanning dependencies of target demo_basic_metaprogramming_switch make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_basic_metaprogramming_switch.dir/build.make core/demos/CMakeFiles/demo_basic_metaprogramming_switch.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Building CXX object core/demos/CMakeFiles/demo_basic_metaprogramming_switch.dir/basic/metaprogramming_switch.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_basic_metaprogramming_switch.dir/basic/metaprogramming_switch.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/basic/metaprogramming_switch.cpp [ 37%] Linking CXX executable ../../bin/demo_graph_algorithms_dag_shortest_path cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_dag_shortest_path.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_dag_shortest_path.dir/graph_algorithms/dag_shortest_path.cpp.o -o ../../bin/demo_graph_algorithms_dag_shortest_path -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Built target demo_graph_algorithms_dag_shortest_path make -f core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_assignment_3_workshop_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Building CXX object core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/tutorial/string_sets/assignment_3_workshop_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/tutorial/string_sets/assignment_3_workshop_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/string_sets/assignment_3_workshop_solution.cpp [ 37%] Linking CXX executable ../../bin/demo_basic_metaprogramming_switch cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_basic_metaprogramming_switch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_basic_metaprogramming_switch.dir/basic/metaprogramming_switch.cpp.o -o ../../bin/demo_basic_metaprogramming_switch -lrt -lz [ 37%] Linking CXX executable ../../bin/demo_graph_algorithms_bellman_ford_algorithm cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_bellman_ford_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_bellman_ford_algorithm.dir/graph_algorithms/bellman_ford_algorithm.cpp.o -o ../../bin/demo_graph_algorithms_bellman_ford_algorithm -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Built target demo_basic_metaprogramming_switch make -f core/demos/CMakeFiles/demo_find_finder_online.dir/build.make core/demos/CMakeFiles/demo_find_finder_online.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_find_finder_online.dir/DependInfo.cmake --color= Scanning dependencies of target demo_find_finder_online make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_find_finder_online.dir/build.make core/demos/CMakeFiles/demo_find_finder_online.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Building CXX object core/demos/CMakeFiles/demo_find_finder_online.dir/find/finder_online.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_find_finder_online.dir/find/finder_online.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/find/finder_online.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Built target demo_graph_algorithms_bellman_ford_algorithm make -f core/demos/CMakeFiles/demo_bam_io_bam_stream.dir/build.make core/demos/CMakeFiles/demo_bam_io_bam_stream.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_bam_io_bam_stream.dir/DependInfo.cmake --color= Scanning dependencies of target demo_bam_io_bam_stream make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_bam_io_bam_stream.dir/build.make core/demos/CMakeFiles/demo_bam_io_bam_stream.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Building CXX object core/demos/CMakeFiles/demo_bam_io_bam_stream.dir/bam_io/bam_stream.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_bam_io_bam_stream.dir/bam_io/bam_stream.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/bam_io/bam_stream.cpp [ 37%] Linking CXX executable ../../bin/demo_tutorial_sequence_sequence_iterator_demo cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_sequence_iterator_demo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_sequence_iterator_demo.dir/tutorial/sequence/sequence_iterator_demo.cpp.o -o ../../bin/demo_tutorial_sequence_sequence_iterator_demo -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Built target demo_tutorial_sequence_sequence_iterator_demo make -f core/demos/CMakeFiles/demo_graph_algorithms_strongly_connected_components.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_strongly_connected_components.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_strongly_connected_components.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_strongly_connected_components make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_strongly_connected_components.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_strongly_connected_components.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 37%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_strongly_connected_components.dir/graph_algorithms/strongly_connected_components.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_strongly_connected_components.dir/graph_algorithms/strongly_connected_components.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/strongly_connected_components.cpp [ 38%] Linking CXX executable ../../bin/demo_graph_algorithms_ford_fulkerson_algorithm cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_ford_fulkerson_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_ford_fulkerson_algorithm.dir/graph_algorithms/ford_fulkerson_algorithm.cpp.o -o ../../bin/demo_graph_algorithms_ford_fulkerson_algorithm -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target demo_graph_algorithms_ford_fulkerson_algorithm make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_msa.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_msa.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_msa.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_msa make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_msa.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_msa.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 39%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_msa.dir/tutorial/alignments/alignment_msa.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_msa.dir/tutorial/alignments/alignment_msa.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_msa.cpp [ 40%] Linking CXX executable ../../bin/demo_tutorial_string_sets_assignment_3_workshop_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_3_workshop_solution.dir/tutorial/string_sets/assignment_3_workshop_solution.cpp.o -o ../../bin/demo_tutorial_string_sets_assignment_3_workshop_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 40%] Built target demo_tutorial_string_sets_assignment_3_workshop_solution make -f core/demos/CMakeFiles/demo_tutorial_index_index_assignment4.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_assignment4.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_index_assignment4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_index_assignment4 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_index_assignment4.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_assignment4.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 40%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_index_assignment4.dir/tutorial/index/index_assignment4.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_index_assignment4.dir/tutorial/index/index_assignment4.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment4.cpp [ 40%] Linking CXX executable ../../bin/demo_find_finder_online cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_find_finder_online.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_find_finder_online.dir/find/finder_online.cpp.o -o ../../bin/demo_find_finder_online -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 40%] Built target demo_find_finder_online make -f core/demos/CMakeFiles/demo_alignment_msa.dir/build.make core/demos/CMakeFiles/demo_alignment_msa.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_alignment_msa.dir/DependInfo.cmake --color= Scanning dependencies of target demo_alignment_msa make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_alignment_msa.dir/build.make core/demos/CMakeFiles/demo_alignment_msa.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 40%] Building CXX object core/demos/CMakeFiles/demo_alignment_msa.dir/alignment_msa.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_alignment_msa.dir/alignment_msa.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/alignment_msa.cpp [ 40%] Linking CXX executable ../../bin/demo_index_mums cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_mums.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_mums.dir/index_mums.cpp.o -o ../../bin/demo_index_mums -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 40%] Built target demo_index_mums make -f core/demos/CMakeFiles/demo_file_speed.dir/build.make core/demos/CMakeFiles/demo_file_speed.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_file_speed.dir/DependInfo.cmake --color= Scanning dependencies of target demo_file_speed make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_file_speed.dir/build.make core/demos/CMakeFiles/demo_file_speed.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 40%] Building CXX object core/demos/CMakeFiles/demo_file_speed.dir/file_speed.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_file_speed.dir/file_speed.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/file_speed.cpp [ 40%] Linking CXX executable ../../bin/demo_graph_algorithms_strongly_connected_components cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_strongly_connected_components.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_strongly_connected_components.dir/graph_algorithms/strongly_connected_components.cpp.o -o ../../bin/demo_graph_algorithms_strongly_connected_components -lrt -lz In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:36, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution4.cpp:2: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution4.cpp:1: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 40%] Built target demo_graph_algorithms_strongly_connected_components make -f core/demos/CMakeFiles/demo_tutorial_index_index_assignment2.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_assignment2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_index_assignment2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_index_assignment2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_index_assignment2.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_assignment2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 41%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_index_assignment2.dir/tutorial/index/index_assignment2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_index_assignment2.dir/tutorial/index/index_assignment2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment2.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution4.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_solution4.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/demos/bam_io/bam_stream.cpp:3: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/bam_io/bam_stream.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment4.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:573:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment4.cpp:2: /usr/include/c++/8/new: In function 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 41%] Linking CXX executable ../../bin/demo_bam_io_bam_stream cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_bam_io_bam_stream.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_bam_io_bam_stream.dir/bam_io/bam_stream.cpp.o -o ../../bin/demo_bam_io_bam_stream -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 41%] Built target demo_bam_io_bam_stream make -f core/demos/CMakeFiles/demo_arg_align.dir/build.make core/demos/CMakeFiles/demo_arg_align.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_arg_align.dir/DependInfo.cmake --color= Scanning dependencies of target demo_arg_align make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_arg_align.dir/build.make core/demos/CMakeFiles/demo_arg_align.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 42%] Building CXX object core/demos/CMakeFiles/demo_arg_align.dir/arg_align.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_arg_align.dir/arg_align.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/arg_align.cpp [ 42%] Linking CXX executable ../../bin/demo_tutorial_index_index_assignment4 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_index_assignment4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_index_assignment4.dir/tutorial/index/index_assignment4.cpp.o -o ../../bin/demo_tutorial_index_index_assignment4 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target demo_tutorial_index_index_assignment4 make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment2.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_rnaseq_genequant_assignment2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment2.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 42%] Building CXX object core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment2.dir/tutorial/rnaseq/genequant_assignment2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_rnaseq_genequant_assignment2.dir/tutorial/rnaseq/genequant_assignment2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment2.cpp [ 42%] Linking CXX executable ../../bin/demo_file_speed cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_file_speed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_file_speed.dir/file_speed.cpp.o -o ../../bin/demo_file_speed -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target demo_file_speed make -f core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_1_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_1_solution.dir/DependInfo.cmake --color= [ 42%] Linking CXX executable ../../bin/demo_tutorial_find_find_index_multiple cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_find_find_index_multiple.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_find_find_index_multiple.dir/tutorial/find/find_index_multiple.cpp.o -o ../../bin/demo_tutorial_find_find_index_multiple -lrt -lz Scanning dependencies of target demo_tutorial_iterators_iterators_assignment_1_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_1_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 42%] Building CXX object core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_1_solution.dir/tutorial/iterators/iterators_assignment_1_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_iterators_iterators_assignment_1_solution.dir/tutorial/iterators/iterators_assignment_1_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/iterators/iterators_assignment_1_solution.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target demo_tutorial_find_find_index_multiple make -f core/demos/CMakeFiles/demo_index_index_length_countSequences.dir/build.make core/demos/CMakeFiles/demo_index_index_length_countSequences.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_length_countSequences.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_length_countSequences make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_length_countSequences.dir/build.make core/demos/CMakeFiles/demo_index_index_length_countSequences.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 42%] Building CXX object core/demos/CMakeFiles/demo_index_index_length_countSequences.dir/index/index_length_countSequences.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_length_countSequences.dir/index/index_length_countSequences.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_length_countSequences.cpp [ 42%] Linking CXX executable ../../bin/demo_tutorial_iterators_iterators_assignment_1_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_iterators_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_iterators_iterators_assignment_1_solution.dir/tutorial/iterators/iterators_assignment_1_solution.cpp.o -o ../../bin/demo_tutorial_iterators_iterators_assignment_1_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target demo_tutorial_iterators_iterators_assignment_1_solution make -f core/demos/CMakeFiles/demo_graph_algorithms_kruskals_algorithm.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_kruskals_algorithm.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_kruskals_algorithm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_kruskals_algorithm make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_kruskals_algorithm.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_kruskals_algorithm.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 42%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_kruskals_algorithm.dir/graph_algorithms/kruskals_algorithm.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_kruskals_algorithm.dir/graph_algorithms/kruskals_algorithm.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/kruskals_algorithm.cpp [ 42%] Linking CXX executable ../../bin/demo_arg_align cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_arg_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_arg_align.dir/arg_align.cpp.o -o ../../bin/demo_arg_align -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target demo_arg_align make -f core/demos/CMakeFiles/demo_alignment_local.dir/build.make core/demos/CMakeFiles/demo_alignment_local.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_alignment_local.dir/DependInfo.cmake --color= Scanning dependencies of target demo_alignment_local make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_alignment_local.dir/build.make core/demos/CMakeFiles/demo_alignment_local.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 42%] Building CXX object core/demos/CMakeFiles/demo_alignment_local.dir/alignment_local.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_alignment_local.dir/alignment_local.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/alignment_local.cpp [ 42%] Linking CXX executable ../../bin/demo_graph_algorithms_kruskals_algorithm cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_kruskals_algorithm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_kruskals_algorithm.dir/graph_algorithms/kruskals_algorithm.cpp.o -o ../../bin/demo_graph_algorithms_kruskals_algorithm -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target demo_graph_algorithms_kruskals_algorithm make -f core/demos/CMakeFiles/demo_basic_enable_if.dir/build.make core/demos/CMakeFiles/demo_basic_enable_if.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_basic_enable_if.dir/DependInfo.cmake --color= Scanning dependencies of target demo_basic_enable_if make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_basic_enable_if.dir/build.make core/demos/CMakeFiles/demo_basic_enable_if.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 43%] Building CXX object core/demos/CMakeFiles/demo_basic_enable_if.dir/basic/enable_if.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_basic_enable_if.dir/basic/enable_if.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/basic/enable_if.cpp [ 43%] Linking CXX executable ../../bin/demo_tutorial_rnaseq_genequant_solution4 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_rnaseq_genequant_solution4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_rnaseq_genequant_solution4.dir/tutorial/rnaseq/genequant_solution4.cpp.o -o ../../bin/demo_tutorial_rnaseq_genequant_solution4 -lrt -lz [ 43%] Linking CXX executable ../../bin/demo_basic_enable_if cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_basic_enable_if.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_basic_enable_if.dir/basic/enable_if.cpp.o -o ../../bin/demo_basic_enable_if -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 43%] Built target demo_basic_enable_if make -f core/demos/CMakeFiles/demo_graph_algorithms_transitive_closure.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_transitive_closure.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_transitive_closure.dir/DependInfo.cmake --color= [ 43%] Built target demo_tutorial_rnaseq_genequant_solution4 make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_transitive_closure make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_transitive_closure.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_transitive_closure.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 43%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_transitive_closure.dir/graph_algorithms/transitive_closure.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_transitive_closure.dir/graph_algorithms/transitive_closure.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/transitive_closure.cpp Scanning dependencies of target demo_tutorial_seed_and_extend_solution4 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 43%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/solution4.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:36, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment2.cpp:2: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment2.cpp:1: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:40, from /build/seqan-1.4.2+dfsg/core/demos/alignment_local.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::ScoreAndID; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::ScoreAndID; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/alignment_local.cpp:2: /usr/include/c++/8/new: In function 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment2.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment2.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 43%] Linking CXX executable ../../bin/demo_graph_algorithms_transitive_closure cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_transitive_closure.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_transitive_closure.dir/graph_algorithms/transitive_closure.cpp.o -o ../../bin/demo_graph_algorithms_transitive_closure -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 43%] Built target demo_graph_algorithms_transitive_closure make -f core/demos/CMakeFiles/demo_file_readwrite.dir/build.make core/demos/CMakeFiles/demo_file_readwrite.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_file_readwrite.dir/DependInfo.cmake --color= Scanning dependencies of target demo_file_readwrite make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_file_readwrite.dir/build.make core/demos/CMakeFiles/demo_file_readwrite.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 43%] Building CXX object core/demos/CMakeFiles/demo_file_readwrite.dir/file_readwrite.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_file_readwrite.dir/file_readwrite.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/file_readwrite.cpp [ 43%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_msa cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_msa.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_msa.dir/tutorial/alignments/alignment_msa.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_msa -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 43%] Built target demo_tutorial_alignments_alignment_msa make -f core/demos/CMakeFiles/demo_modifier_modified_string_mod_view.dir/build.make core/demos/CMakeFiles/demo_modifier_modified_string_mod_view.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_modifier_modified_string_mod_view.dir/DependInfo.cmake --color= Scanning dependencies of target demo_modifier_modified_string_mod_view make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_modifier_modified_string_mod_view.dir/build.make core/demos/CMakeFiles/demo_modifier_modified_string_mod_view.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 43%] Building CXX object core/demos/CMakeFiles/demo_modifier_modified_string_mod_view.dir/modifier/modified_string_mod_view.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_modifier_modified_string_mod_view.dir/modifier/modified_string_mod_view.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/modifier/modified_string_mod_view.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:40, from /build/seqan-1.4.2+dfsg/core/demos/alignment_local.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::ScoreAndID; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::ScoreAndID; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'typename seqan::LocalAlignmentFinder::TMatrixPosition seqan::_getNextBestEndPosition(seqan::LocalAlignmentFinder&, TScoreValue) [with TScoreValue = int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:673:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/alignment_local.cpp:2: /usr/include/c++/8/new: In function 'typename seqan::LocalAlignmentFinder::TMatrixPosition seqan::_getNextBestEndPosition(seqan::LocalAlignmentFinder&, TScoreValue) [with TScoreValue = int]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 44%] Linking CXX executable ../../bin/demo_alignment_msa cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_alignment_msa.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_alignment_msa.dir/alignment_msa.cpp.o -o ../../bin/demo_alignment_msa -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target demo_alignment_msa make -f core/demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make core/demos/CMakeFiles/demo_tutorial_basics_strings.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_basics_strings.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_basics_strings make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_basics_strings.dir/build.make core/demos/CMakeFiles/demo_tutorial_basics_strings.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 44%] Building CXX object core/demos/CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/basics/strings.cpp [ 44%] Linking CXX executable ../../bin/demo_file_readwrite cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_file_readwrite.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_file_readwrite.dir/file_readwrite.cpp.o -o ../../bin/demo_file_readwrite -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target demo_file_readwrite make -f core/demos/CMakeFiles/demo_align_gaps_clipping.dir/build.make core/demos/CMakeFiles/demo_align_gaps_clipping.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_align_gaps_clipping.dir/DependInfo.cmake --color= Scanning dependencies of target demo_align_gaps_clipping make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_align_gaps_clipping.dir/build.make core/demos/CMakeFiles/demo_align_gaps_clipping.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 44%] Building CXX object core/demos/CMakeFiles/demo_align_gaps_clipping.dir/align_gaps_clipping.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_align_gaps_clipping.dir/align_gaps_clipping.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/align_gaps_clipping.cpp [ 44%] Linking CXX executable ../../bin/demo_modifier_modified_string_mod_view cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_modifier_modified_string_mod_view.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_modifier_modified_string_mod_view.dir/modifier/modified_string_mod_view.cpp.o -o ../../bin/demo_modifier_modified_string_mod_view -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target demo_modifier_modified_string_mod_view make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment3.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment3.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_global_assignment3 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment3.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment3.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 44%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment3.dir/tutorial/alignments/alignment_global_assignment3.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_global_assignment3.dir/tutorial/alignments/alignment_global_assignment3.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_assignment3.cpp [ 44%] Linking CXX executable ../../bin/demo_alignment_local cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_alignment_local.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_alignment_local.dir/alignment_local.cpp.o -o ../../bin/demo_alignment_local -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target demo_alignment_local make -f core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_segments_assignment_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 44%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequences_segments_assignment_solution.dir/tutorial/sequences/segments_assignment_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequences_segments_assignment_solution.dir/tutorial/sequences/segments_assignment_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequences/segments_assignment_solution.cpp [ 44%] Linking CXX executable ../../bin/demo_tutorial_basics_strings cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_basics_strings.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_basics_strings.dir/tutorial/basics/strings.cpp.o -o ../../bin/demo_tutorial_basics_strings -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target demo_tutorial_basics_strings make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_solution6.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_solution6.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_solution6.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_solution6 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_solution6.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_solution6.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 44%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_solution6.dir/tutorial/sequence_io/solution6.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_solution6.dir/tutorial/sequence_io/solution6.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution6.cpp [ 44%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_solution4 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution4.dir/tutorial/seed_and_extend/solution4.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_solution4 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target demo_tutorial_seed_and_extend_solution4 make -f core/demos/CMakeFiles/demo_index_index_supermaxrepeats.dir/build.make core/demos/CMakeFiles/demo_index_index_supermaxrepeats.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_supermaxrepeats.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_supermaxrepeats make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_supermaxrepeats.dir/build.make core/demos/CMakeFiles/demo_index_index_supermaxrepeats.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_index_index_supermaxrepeats.dir/index/index_supermaxrepeats.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_supermaxrepeats.dir/index/index_supermaxrepeats.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_supermaxrepeats.cpp [ 45%] Linking CXX executable ../../bin/demo_align_gaps_clipping cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_align_gaps_clipping.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_align_gaps_clipping.dir/align_gaps_clipping.cpp.o -o ../../bin/demo_align_gaps_clipping -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target demo_align_gaps_clipping make -f core/demos/CMakeFiles/demo_alignment.dir/build.make core/demos/CMakeFiles/demo_alignment.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_alignment.dir/DependInfo.cmake --color= Scanning dependencies of target demo_alignment make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_alignment.dir/build.make core/demos/CMakeFiles/demo_alignment.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_alignment.dir/alignment.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_alignment.dir/alignment.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/alignment.cpp [ 45%] Linking CXX executable ../../bin/demo_tutorial_sequences_segments_assignment_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_segments_assignment_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequences_segments_assignment_solution.dir/tutorial/sequences/segments_assignment_solution.cpp.o -o ../../bin/demo_tutorial_sequences_segments_assignment_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target demo_tutorial_sequences_segments_assignment_solution make -f core/demos/CMakeFiles/demo_index_index_counting.dir/build.make core/demos/CMakeFiles/demo_index_index_counting.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_counting.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_counting make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_counting.dir/build.make core/demos/CMakeFiles/demo_index_index_counting.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_index_index_counting.dir/index/index_counting.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_counting.dir/index/index_counting.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_counting.cpp [ 45%] Linking CXX executable ../../bin/demo_tutorial_index_index_assignment2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_index_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_index_assignment2.dir/tutorial/index/index_assignment2.cpp.o -o ../../bin/demo_tutorial_index_index_assignment2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target demo_tutorial_index_index_assignment2 make -f core/demos/CMakeFiles/demo_tutorial_find_find_approx.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_approx.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_find_find_approx.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_find_find_approx make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_find_find_approx.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_approx.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_tutorial_find_find_approx.dir/tutorial/find/find_approx.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_find_find_approx.dir/tutorial/find/find_approx.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_approx.cpp [ 45%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_global_assignment3 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_global_assignment3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_global_assignment3.dir/tutorial/alignments/alignment_global_assignment3.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_global_assignment3 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target demo_tutorial_alignments_alignment_global_assignment3 make -f core/demos/CMakeFiles/demo_graph_algorithms_floyd_warshall_algorithm.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_floyd_warshall_algorithm.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_floyd_warshall_algorithm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_floyd_warshall_algorithm make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_floyd_warshall_algorithm.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_floyd_warshall_algorithm.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_floyd_warshall_algorithm.dir/graph_algorithms/floyd_warshall_algorithm.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_floyd_warshall_algorithm.dir/graph_algorithms/floyd_warshall_algorithm.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/floyd_warshall_algorithm.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution6.cpp:5: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution6.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Linking CXX executable ../../bin/demo_tutorial_rnaseq_genequant_assignment2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_rnaseq_genequant_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_rnaseq_genequant_assignment2.dir/tutorial/rnaseq/genequant_assignment2.cpp.o -o ../../bin/demo_tutorial_rnaseq_genequant_assignment2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target demo_tutorial_rnaseq_genequant_assignment2 make -f core/demos/CMakeFiles/demo_align_compute_alignment_stats.dir/build.make core/demos/CMakeFiles/demo_align_compute_alignment_stats.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_align_compute_alignment_stats.dir/DependInfo.cmake --color= Scanning dependencies of target demo_align_compute_alignment_stats make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_align_compute_alignment_stats.dir/build.make core/demos/CMakeFiles/demo_align_compute_alignment_stats.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_align_compute_alignment_stats.dir/align/compute_alignment_stats.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_align_compute_alignment_stats.dir/align/compute_alignment_stats.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/align/compute_alignment_stats.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_supermaxrepeats.cpp:4: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_algs.h:150:16: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_supermaxrepeats.cpp:3: /usr/include/c++/8/new: In constructor 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 45%] Linking CXX executable ../../bin/demo_tutorial_find_find_approx cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_find_find_approx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_find_find_approx.dir/tutorial/find/find_approx.cpp.o -o ../../bin/demo_tutorial_find_find_approx -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target demo_tutorial_find_find_approx make -f core/demos/CMakeFiles/demo_alphabet.dir/build.make core/demos/CMakeFiles/demo_alphabet.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_alphabet.dir/DependInfo.cmake --color= Scanning dependencies of target demo_alphabet make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_alphabet.dir/build.make core/demos/CMakeFiles/demo_alphabet.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_alphabet.dir/alphabet.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_alphabet.dir/alphabet.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/alphabet.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_counting.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:573:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_counting.cpp:2: /usr/include/c++/8/new: In function 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 45%] Linking CXX executable ../../bin/demo_index_index_supermaxrepeats cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_supermaxrepeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_supermaxrepeats.dir/index/index_supermaxrepeats.cpp.o -o ../../bin/demo_index_index_supermaxrepeats -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target demo_index_index_supermaxrepeats make -f core/demos/CMakeFiles/demo_iterator.dir/build.make core/demos/CMakeFiles/demo_iterator.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_iterator.dir/DependInfo.cmake --color= Scanning dependencies of target demo_iterator make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_iterator.dir/build.make core/demos/CMakeFiles/demo_iterator.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_iterator.dir/iterator.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_iterator.dir/iterator.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/iterator.cpp [ 45%] Linking CXX executable ../../bin/demo_index_index_counting cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_counting.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_counting.dir/index/index_counting.cpp.o -o ../../bin/demo_index_index_counting -lrt -lz [ 45%] Linking CXX executable ../../bin/demo_graph_algorithms_floyd_warshall_algorithm cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_floyd_warshall_algorithm.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_floyd_warshall_algorithm.dir/graph_algorithms/floyd_warshall_algorithm.cpp.o -o ../../bin/demo_graph_algorithms_floyd_warshall_algorithm -lrt -lz [ 45%] Built target demo_index_index_counting make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment2.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_pairwise_global_assignment2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment2.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment2.dir/tutorial/alignments/alignment_pairwise_global_assignment2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment2.dir/tutorial/alignments/alignment_pairwise_global_assignment2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_global_assignment2.cpp [ 45%] Built target demo_graph_algorithms_floyd_warshall_algorithm make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example7.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example7.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_example7.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_example7 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example7.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example7.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_example7.dir/tutorial/sequence_io/example7.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_example7.dir/tutorial/sequence_io/example7.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example7.cpp [ 45%] Linking CXX executable ../../bin/demo_alphabet cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_alphabet.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_alphabet.dir/alphabet.cpp.o -o ../../bin/demo_alphabet -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target demo_alphabet make -f core/demos/CMakeFiles/demo_align_global_alignment_unbanded.dir/build.make core/demos/CMakeFiles/demo_align_global_alignment_unbanded.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_align_global_alignment_unbanded.dir/DependInfo.cmake --color= Scanning dependencies of target demo_align_global_alignment_unbanded make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_align_global_alignment_unbanded.dir/build.make core/demos/CMakeFiles/demo_align_global_alignment_unbanded.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_align_global_alignment_unbanded.dir/align/global_alignment_unbanded.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_align_global_alignment_unbanded.dir/align/global_alignment_unbanded.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/align/global_alignment_unbanded.cpp [ 45%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_solution6 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution6.dir/tutorial/sequence_io/solution6.cpp.o -o ../../bin/demo_tutorial_sequence_io_solution6 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target demo_tutorial_sequence_io_solution6 make -f core/demos/CMakeFiles/demo_allocator.dir/build.make core/demos/CMakeFiles/demo_allocator.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_allocator.dir/DependInfo.cmake --color= Scanning dependencies of target demo_allocator make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_allocator.dir/build.make core/demos/CMakeFiles/demo_allocator.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_allocator.dir/allocator.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_allocator.dir/allocator.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/allocator.cpp [ 45%] Linking CXX executable ../../bin/demo_index_index_length_countSequences cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_length_countSequences.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_length_countSequences.dir/index/index_length_countSequences.cpp.o -o ../../bin/demo_index_index_length_countSequences -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target demo_index_index_length_countSequences make -f core/demos/CMakeFiles/demo_index_index_begin_range_goDown_representative_repLength.dir/build.make core/demos/CMakeFiles/demo_index_index_begin_range_goDown_representative_repLength.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_begin_range_goDown_representative_repLength.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_begin_range_goDown_representative_repLength make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_begin_range_goDown_representative_repLength.dir/build.make core/demos/CMakeFiles/demo_index_index_begin_range_goDown_representative_repLength.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object core/demos/CMakeFiles/demo_index_index_begin_range_goDown_representative_repLength.dir/index/index_begin_range_goDown_representative_repLength.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_begin_range_goDown_representative_repLength.dir/index/index_begin_range_goDown_representative_repLength.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_begin_range_goDown_representative_repLength.cpp [ 46%] Linking CXX executable ../../bin/demo_iterator cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_iterator.dir/iterator.cpp.o -o ../../bin/demo_iterator -lrt -lz [ 46%] Linking CXX executable ../../bin/demo_allocator cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_allocator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_allocator.dir/allocator.cpp.o -o ../../bin/demo_allocator -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 46%] Built target demo_iterator make -f core/demos/CMakeFiles/demo_align_gaps_example.dir/build.make core/demos/CMakeFiles/demo_align_gaps_example.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_align_gaps_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_align_gaps_example make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_align_gaps_example.dir/build.make core/demos/CMakeFiles/demo_align_gaps_example.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 47%] Building CXX object core/demos/CMakeFiles/demo_align_gaps_example.dir/align/gaps_example.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_align_gaps_example.dir/align/gaps_example.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/align/gaps_example.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 47%] Built target demo_allocator make -f core/demos/CMakeFiles/demo_find_finder_aho_corasick.dir/build.make core/demos/CMakeFiles/demo_find_finder_aho_corasick.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_find_finder_aho_corasick.dir/DependInfo.cmake --color= Scanning dependencies of target demo_find_finder_aho_corasick make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_find_finder_aho_corasick.dir/build.make core/demos/CMakeFiles/demo_find_finder_aho_corasick.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 47%] Building CXX object core/demos/CMakeFiles/demo_find_finder_aho_corasick.dir/find/finder_aho_corasick.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_find_finder_aho_corasick.dir/find/finder_aho_corasick.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/find/finder_aho_corasick.cpp [ 47%] Linking CXX executable ../../bin/demo_alignment cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_alignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_alignment.dir/alignment.cpp.o -o ../../bin/demo_alignment -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 47%] Built target demo_alignment make -f core/demos/CMakeFiles/demo_find_finder_index.dir/build.make core/demos/CMakeFiles/demo_find_finder_index.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_find_finder_index.dir/DependInfo.cmake --color= Scanning dependencies of target demo_find_finder_index make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_find_finder_index.dir/build.make core/demos/CMakeFiles/demo_find_finder_index.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 47%] Building CXX object core/demos/CMakeFiles/demo_find_finder_index.dir/find/finder_index.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_find_finder_index.dir/find/finder_index.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/find/finder_index.cpp [ 47%] Linking CXX executable ../../bin/demo_align_gaps_example cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_align_gaps_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_align_gaps_example.dir/align/gaps_example.cpp.o -o ../../bin/demo_align_gaps_example -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 47%] Built target demo_align_gaps_example make -f core/demos/CMakeFiles/demo_index_index_open_save.dir/build.make core/demos/CMakeFiles/demo_index_index_open_save.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_open_save.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_open_save make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_open_save.dir/build.make core/demos/CMakeFiles/demo_index_index_open_save.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 47%] Building CXX object core/demos/CMakeFiles/demo_index_index_open_save.dir/index/index_open_save.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_open_save.dir/index/index_open_save.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_open_save.cpp [ 47%] Linking CXX executable ../../bin/demo_align_compute_alignment_stats cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_align_compute_alignment_stats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_align_compute_alignment_stats.dir/align/compute_alignment_stats.cpp.o -o ../../bin/demo_align_compute_alignment_stats -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 47%] Built target demo_align_compute_alignment_stats make -f core/demos/CMakeFiles/demo_gff2gtf.dir/build.make core/demos/CMakeFiles/demo_gff2gtf.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_gff2gtf.dir/DependInfo.cmake --color= Scanning dependencies of target demo_gff2gtf make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_gff2gtf.dir/build.make core/demos/CMakeFiles/demo_gff2gtf.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 47%] Building CXX object core/demos/CMakeFiles/demo_gff2gtf.dir/gff2gtf.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_gff2gtf.dir/gff2gtf.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/gff2gtf.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example7.cpp:1: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:44, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example7.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_begin_range_goDown_representative_repLength.cpp:1: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:573:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_begin_range_goDown_representative_repLength.cpp:1: /usr/include/c++/8/new: In function 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 47%] Linking CXX executable ../../bin/demo_index_index_begin_range_goDown_representative_repLength cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_begin_range_goDown_representative_repLength.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_begin_range_goDown_representative_repLength.dir/index/index_begin_range_goDown_representative_repLength.cpp.o -o ../../bin/demo_index_index_begin_range_goDown_representative_repLength -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 47%] Built target demo_index_index_begin_range_goDown_representative_repLength make -f core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_nested.dir/build.make core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_nested.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_nested.dir/DependInfo.cmake --color= [ 47%] Linking CXX executable ../../bin/demo_align_global_alignment_unbanded cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_align_global_alignment_unbanded.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_align_global_alignment_unbanded.dir/align/global_alignment_unbanded.cpp.o -o ../../bin/demo_align_global_alignment_unbanded -lrt -lz Scanning dependencies of target demo_tutorial_modifiers_modifier_nested make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_nested.dir/build.make core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_nested.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 48%] Building CXX object core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_nested.dir/tutorial/modifiers/modifier_nested.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_modifiers_modifier_nested.dir/tutorial/modifiers/modifier_nested.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/modifiers/modifier_nested.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 48%] Built target demo_align_global_alignment_unbanded make -f core/demos/CMakeFiles/demo_basic_metaprogramming_logic.dir/build.make core/demos/CMakeFiles/demo_basic_metaprogramming_logic.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_basic_metaprogramming_logic.dir/DependInfo.cmake --color= Scanning dependencies of target demo_basic_metaprogramming_logic make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_basic_metaprogramming_logic.dir/build.make core/demos/CMakeFiles/demo_basic_metaprogramming_logic.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 48%] Building CXX object core/demos/CMakeFiles/demo_basic_metaprogramming_logic.dir/basic/metaprogramming_logic.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_basic_metaprogramming_logic.dir/basic/metaprogramming_logic.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/basic/metaprogramming_logic.cpp [ 49%] Linking CXX executable ../../bin/demo_find_finder_aho_corasick cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_find_finder_aho_corasick.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_find_finder_aho_corasick.dir/find/finder_aho_corasick.cpp.o -o ../../bin/demo_find_finder_aho_corasick -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 49%] Built target demo_find_finder_aho_corasick make -f core/demos/CMakeFiles/demo_graph_hmm_silent.dir/build.make core/demos/CMakeFiles/demo_graph_hmm_silent.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_hmm_silent.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_hmm_silent make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_hmm_silent.dir/build.make core/demos/CMakeFiles/demo_graph_hmm_silent.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 49%] Building CXX object core/demos/CMakeFiles/demo_graph_hmm_silent.dir/graph_hmm_silent.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_hmm_silent.dir/graph_hmm_silent.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_hmm_silent.cpp [ 49%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_pairwise_global_assignment2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment2.dir/tutorial/alignments/alignment_pairwise_global_assignment2.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_pairwise_global_assignment2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 49%] Built target demo_tutorial_alignments_alignment_pairwise_global_assignment2 make -f core/demos/CMakeFiles/demo_index_index_iterator.dir/build.make core/demos/CMakeFiles/demo_index_index_iterator.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_iterator.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_iterator make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_iterator.dir/build.make core/demos/CMakeFiles/demo_index_index_iterator.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 49%] Building CXX object core/demos/CMakeFiles/demo_index_index_iterator.dir/index/index_iterator.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_iterator.dir/index/index_iterator.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_iterator.cpp [ 49%] Linking CXX executable ../../bin/demo_basic_metaprogramming_logic cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_basic_metaprogramming_logic.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_basic_metaprogramming_logic.dir/basic/metaprogramming_logic.cpp.o -o ../../bin/demo_basic_metaprogramming_logic -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 50%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_example7 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example7.dir/link.txt --verbose=1 [ 50%] Built target demo_basic_metaprogramming_logic make -f core/demos/CMakeFiles/demo_filter_sam.dir/build.make core/demos/CMakeFiles/demo_filter_sam.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_filter_sam.dir/DependInfo.cmake --color= /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_example7.dir/tutorial/sequence_io/example7.cpp.o -o ../../bin/demo_tutorial_sequence_io_example7 -lrt -lz Scanning dependencies of target demo_filter_sam make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_filter_sam.dir/build.make core/demos/CMakeFiles/demo_filter_sam.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 51%] Building CXX object core/demos/CMakeFiles/demo_filter_sam.dir/filter_sam.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_filter_sam.dir/filter_sam.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/filter_sam.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 51%] Built target demo_tutorial_sequence_io_example7 make -f core/demos/CMakeFiles/demo_align_align.dir/build.make core/demos/CMakeFiles/demo_align_align.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_align_align.dir/DependInfo.cmake --color= Scanning dependencies of target demo_align_align make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_align_align.dir/build.make core/demos/CMakeFiles/demo_align_align.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 51%] Building CXX object core/demos/CMakeFiles/demo_align_align.dir/align/align.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_align_align.dir/align/align.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/align/align.cpp [ 51%] Linking CXX executable ../../bin/demo_tutorial_modifiers_modifier_nested cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_modifier_nested.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_modifiers_modifier_nested.dir/tutorial/modifiers/modifier_nested.cpp.o -o ../../bin/demo_tutorial_modifiers_modifier_nested -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 51%] Built target demo_tutorial_modifiers_modifier_nested make -f core/demos/CMakeFiles/demo_find_exact.dir/build.make core/demos/CMakeFiles/demo_find_exact.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_find_exact.dir/DependInfo.cmake --color= Scanning dependencies of target demo_find_exact make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_find_exact.dir/build.make core/demos/CMakeFiles/demo_find_exact.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 51%] Building CXX object core/demos/CMakeFiles/demo_find_exact.dir/find_exact.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_find_exact.dir/find_exact.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/find_exact.cpp [ 51%] Linking CXX executable ../../bin/demo_graph_hmm_silent cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_hmm_silent.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_hmm_silent.dir/graph_hmm_silent.cpp.o -o ../../bin/demo_graph_hmm_silent -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 51%] Built target demo_graph_hmm_silent make -f core/demos/CMakeFiles/demo_index_maxrepeats.dir/build.make core/demos/CMakeFiles/demo_index_maxrepeats.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_maxrepeats.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_maxrepeats make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_maxrepeats.dir/build.make core/demos/CMakeFiles/demo_index_maxrepeats.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 52%] Building CXX object core/demos/CMakeFiles/demo_index_maxrepeats.dir/index_maxrepeats.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_maxrepeats.dir/index_maxrepeats.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index_maxrepeats.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_iterator.cpp:1: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:573:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_iterator.cpp:1: /usr/include/c++/8/new: In function 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::String >; TSpec = void]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/gff2gtf.cpp:6: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/gff2gtf.cpp:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Linking CXX executable ../../bin/demo_index_index_iterator cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_iterator.dir/index/index_iterator.cpp.o -o ../../bin/demo_index_index_iterator -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 52%] Built target demo_index_index_iterator make -f core/demos/CMakeFiles/demo_benchmark_stream.dir/build.make core/demos/CMakeFiles/demo_benchmark_stream.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_benchmark_stream.dir/DependInfo.cmake --color= Scanning dependencies of target demo_benchmark_stream make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_benchmark_stream.dir/build.make core/demos/CMakeFiles/demo_benchmark_stream.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 52%] Building CXX object core/demos/CMakeFiles/demo_benchmark_stream.dir/benchmark_stream.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_benchmark_stream.dir/benchmark_stream.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/benchmark_stream.cpp [ 52%] Linking CXX executable ../../bin/demo_find_exact cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_find_exact.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_find_exact.dir/find_exact.cpp.o -o ../../bin/demo_find_exact -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 52%] Built target demo_find_exact make -f core/demos/CMakeFiles/demo_graph_algorithms_all_pairs_shortest_path.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_all_pairs_shortest_path.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_all_pairs_shortest_path.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_all_pairs_shortest_path make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_all_pairs_shortest_path.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_all_pairs_shortest_path.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 52%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_all_pairs_shortest_path.dir/graph_algorithms/all_pairs_shortest_path.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_all_pairs_shortest_path.dir/graph_algorithms/all_pairs_shortest_path.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/all_pairs_shortest_path.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/find.h:43, from /build/seqan-1.4.2+dfsg/core/demos/find/finder_index.cpp:1: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/ext/new_allocator.h:33, from /usr/include/aarch64-linux-gnu/c++/8/bits/c++allocator.h:33, from /usr/include/c++/8/bits/allocator.h:46, from /usr/include/c++/8/deque:61, from /build/seqan-1.4.2+dfsg/core/include/seqan/find.h:41, from /build/seqan-1.4.2+dfsg/core/demos/find/finder_index.cpp:1: /usr/include/c++/8/new: In function 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int> >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/find.h:43, from /build/seqan-1.4.2+dfsg/core/demos/find/finder_index.cpp:1: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/ext/new_allocator.h:33, from /usr/include/aarch64-linux-gnu/c++/8/bits/c++allocator.h:33, from /usr/include/c++/8/bits/allocator.h:46, from /usr/include/c++/8/deque:61, from /build/seqan-1.4.2+dfsg/core/include/seqan/find.h:41, from /build/seqan-1.4.2+dfsg/core/demos/find/finder_index.cpp:1: /usr/include/c++/8/new: In function 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended, seqan::Tuple >, seqan::Tag > >; TLess = seqan::MergeStreamComparer, seqan::Tuple >, seqan::Tag >, seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int> >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 52%] Linking CXX executable ../../bin/demo_align_align cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_align_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_align_align.dir/align/align.cpp.o -o ../../bin/demo_align_align -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 52%] Built target demo_align_align make -f core/demos/CMakeFiles/demo_modifier_modified_string_nested.dir/build.make core/demos/CMakeFiles/demo_modifier_modified_string_nested.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_modifier_modified_string_nested.dir/DependInfo.cmake --color= Scanning dependencies of target demo_modifier_modified_string_nested make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_modifier_modified_string_nested.dir/build.make core/demos/CMakeFiles/demo_modifier_modified_string_nested.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object core/demos/CMakeFiles/demo_modifier_modified_string_nested.dir/modifier/modified_string_nested.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_modifier_modified_string_nested.dir/modifier/modified_string_nested.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/modifier/modified_string_nested.cpp [ 53%] Linking CXX executable ../../bin/demo_modifier_modified_string_nested cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_modifier_modified_string_nested.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_modifier_modified_string_nested.dir/modifier/modified_string_nested.cpp.o -o ../../bin/demo_modifier_modified_string_nested -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target demo_modifier_modified_string_nested make -f core/demos/CMakeFiles/demo_tutorial_random_random_examples.dir/build.make core/demos/CMakeFiles/demo_tutorial_random_random_examples.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_random_random_examples.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_random_random_examples In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/filter_sam.cpp:18: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/filter_sam.cpp:13: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_random_random_examples.dir/build.make core/demos/CMakeFiles/demo_tutorial_random_random_examples.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object core/demos/CMakeFiles/demo_tutorial_random_random_examples.dir/tutorial/random/random_examples.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_random_random_examples.dir/tutorial/random/random_examples.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/random/random_examples.cpp [ 53%] Linking CXX executable ../../bin/demo_graph_algorithms_all_pairs_shortest_path cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_all_pairs_shortest_path.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_all_pairs_shortest_path.dir/graph_algorithms/all_pairs_shortest_path.cpp.o -o ../../bin/demo_graph_algorithms_all_pairs_shortest_path -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target demo_graph_algorithms_all_pairs_shortest_path make -f core/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make core/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/DependInfo.cmake --color= [ 53%] Linking CXX executable ../../bin/demo_gff2gtf cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_gff2gtf.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_gff2gtf.dir/gff2gtf.cpp.o -o ../../bin/demo_gff2gtf -lrt -lz Scanning dependencies of target demo_tutorial_graph_graph_algo_scc make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build.make core/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object core/demos/CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/graph/graph_algo_scc.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target demo_gff2gtf make -f core/demos/CMakeFiles/demo_tutorial_find_find_assignment1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_assignment1_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_find_find_assignment1_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_find_find_assignment1_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_find_find_assignment1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_assignment1_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object core/demos/CMakeFiles/demo_tutorial_find_find_assignment1_solution.dir/tutorial/find/find_assignment1_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_find_find_assignment1_solution.dir/tutorial/find/find_assignment1_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_assignment1_solution.cpp [ 53%] Linking CXX executable ../../bin/demo_index_maxrepeats cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_maxrepeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_maxrepeats.dir/index_maxrepeats.cpp.o -o ../../bin/demo_index_maxrepeats -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target demo_index_maxrepeats make -f core/demos/CMakeFiles/demo_sequence_segment.dir/build.make core/demos/CMakeFiles/demo_sequence_segment.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_sequence_segment.dir/DependInfo.cmake --color= Scanning dependencies of target demo_sequence_segment make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_sequence_segment.dir/build.make core/demos/CMakeFiles/demo_sequence_segment.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object core/demos/CMakeFiles/demo_sequence_segment.dir/sequence/segment.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_sequence_segment.dir/sequence/segment.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/sequence/segment.cpp [ 53%] Linking CXX executable ../../bin/demo_tutorial_random_random_examples cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_random_random_examples.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_random_random_examples.dir/tutorial/random/random_examples.cpp.o -o ../../bin/demo_tutorial_random_random_examples -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target demo_tutorial_random_random_examples make -f core/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequences_in_depth_assignment_exact_generous_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp [ 53%] Linking CXX executable ../../bin/demo_find_finder_index cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_find_finder_index.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_find_finder_index.dir/find/finder_index.cpp.o -o ../../bin/demo_find_finder_index -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target demo_find_finder_index make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_standard.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_standard.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_standard.dir/DependInfo.cmake --color= [ 53%] Linking CXX executable ../../bin/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/link.txt --verbose=1 [ 53%] Linking CXX executable ../../bin/demo_sequence_segment cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sequence_segment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution.dir/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp.o -o ../../bin/demo_tutorial_sequences_in_depth_assignment_exact_generous_solution -lrt -lz Scanning dependencies of target demo_tutorial_alignments_alignment_global_standard /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_sequence_segment.dir/sequence/segment.cpp.o -o ../../bin/demo_sequence_segment -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_standard.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_standard.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_standard.dir/tutorial/alignments/alignment_global_standard.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_global_standard.dir/tutorial/alignments/alignment_global_standard.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_standard.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target demo_tutorial_sequences_in_depth_assignment_exact_generous_solution make -f core/demos/CMakeFiles/demo_tutorial_alphabets_alphabet_assignment_1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_alphabets_alphabet_assignment_1_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alphabets_alphabet_assignment_1_solution.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_alphabets_alphabet_assignment_1_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alphabets_alphabet_assignment_1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_alphabets_alphabet_assignment_1_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target demo_sequence_segment make -f core/demos/CMakeFiles/demo_index_index_getOccurrences_getFrequency_range_getFibre.dir/build.make core/demos/CMakeFiles/demo_index_index_getOccurrences_getFrequency_range_getFibre.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_getOccurrences_getFrequency_range_getFibre.dir/DependInfo.cmake --color= [ 53%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alphabets_alphabet_assignment_1_solution.dir/tutorial/alphabets/alphabet_assignment_1_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alphabets_alphabet_assignment_1_solution.dir/tutorial/alphabets/alphabet_assignment_1_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alphabets/alphabet_assignment_1_solution.cpp Scanning dependencies of target demo_index_index_getOccurrences_getFrequency_range_getFibre make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_getOccurrences_getFrequency_range_getFibre.dir/build.make core/demos/CMakeFiles/demo_index_index_getOccurrences_getFrequency_range_getFibre.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 53%] Building CXX object core/demos/CMakeFiles/demo_index_index_getOccurrences_getFrequency_range_getFibre.dir/index/index_getOccurrences_getFrequency_range_getFibre.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_getOccurrences_getFrequency_range_getFibre.dir/index/index_getOccurrences_getFrequency_range_getFibre.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_getOccurrences_getFrequency_range_getFibre.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/benchmark_stream.cpp:52: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/seqan-1.4.2+dfsg/core/demos/benchmark_stream.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Linking CXX executable ../../bin/demo_tutorial_find_find_assignment1_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_find_find_assignment1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_find_find_assignment1_solution.dir/tutorial/find/find_assignment1_solution.cpp.o -o ../../bin/demo_tutorial_find_find_assignment1_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 54%] Built target demo_tutorial_find_find_assignment1_solution make -f core/demos/CMakeFiles/demo_annotation_converter.dir/build.make core/demos/CMakeFiles/demo_annotation_converter.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_annotation_converter.dir/DependInfo.cmake --color= [ 54%] Linking CXX executable ../../bin/demo_tutorial_graph_graph_algo_scc cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_graph_graph_algo_scc.dir/tutorial/graph/graph_algo_scc.cpp.o -o ../../bin/demo_tutorial_graph_graph_algo_scc -lrt -lz Scanning dependencies of target demo_annotation_converter make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_annotation_converter.dir/build.make core/demos/CMakeFiles/demo_annotation_converter.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 54%] Building CXX object core/demos/CMakeFiles/demo_annotation_converter.dir/annotation_converter.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_annotation_converter.dir/annotation_converter.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/annotation_converter.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 54%] Built target demo_tutorial_graph_graph_algo_scc make -f core/demos/CMakeFiles/demo_graph_graph_algo_dijkstra.dir/build.make core/demos/CMakeFiles/demo_graph_graph_algo_dijkstra.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_graph_algo_dijkstra.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_graph_algo_dijkstra make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_graph_algo_dijkstra.dir/build.make core/demos/CMakeFiles/demo_graph_graph_algo_dijkstra.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 54%] Building CXX object core/demos/CMakeFiles/demo_graph_graph_algo_dijkstra.dir/graph/graph_algo_dijkstra.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_graph_algo_dijkstra.dir/graph/graph_algo_dijkstra.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph/graph_algo_dijkstra.cpp [ 54%] Linking CXX executable ../../bin/demo_tutorial_alphabets_alphabet_assignment_1_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alphabets_alphabet_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alphabets_alphabet_assignment_1_solution.dir/tutorial/alphabets/alphabet_assignment_1_solution.cpp.o -o ../../bin/demo_tutorial_alphabets_alphabet_assignment_1_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 54%] Built target demo_tutorial_alphabets_alphabet_assignment_1_solution make -f core/demos/CMakeFiles/demo_index_shape.dir/build.make core/demos/CMakeFiles/demo_index_shape.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_shape.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_shape make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_shape.dir/build.make core/demos/CMakeFiles/demo_index_shape.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 54%] Building CXX object core/demos/CMakeFiles/demo_index_shape.dir/index/shape.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_shape.dir/index/shape.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/shape.cpp [ 55%] Linking CXX executable ../../bin/demo_graph_graph_algo_dijkstra cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_graph_algo_dijkstra.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_graph_algo_dijkstra.dir/graph/graph_algo_dijkstra.cpp.o -o ../../bin/demo_graph_graph_algo_dijkstra -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 55%] Built target demo_graph_graph_algo_dijkstra make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_global_assignment1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment1.dir/tutorial/alignments/alignment_global_assignment1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_global_assignment1.dir/tutorial/alignments/alignment_global_assignment1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_assignment1.cpp [ 56%] Linking CXX executable ../../bin/demo_index_shape cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_shape.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_shape.dir/index/shape.cpp.o -o ../../bin/demo_index_shape -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Built target demo_index_shape make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment4.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment4.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_rnaseq_genequant_assignment4 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment4.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment4.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Building CXX object core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment4.dir/tutorial/rnaseq/genequant_assignment4.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_rnaseq_genequant_assignment4.dir/tutorial/rnaseq/genequant_assignment4.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment4.cpp [ 56%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_global_standard cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_global_standard.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_global_standard.dir/tutorial/alignments/alignment_global_standard.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_global_standard -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Built target demo_tutorial_alignments_alignment_global_standard make -f core/demos/CMakeFiles/demo_index_shape_hash.dir/build.make core/demos/CMakeFiles/demo_index_shape_hash.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_shape_hash.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_shape_hash make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_shape_hash.dir/build.make core/demos/CMakeFiles/demo_index_shape_hash.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Linking CXX executable ../../bin/demo_benchmark_stream cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_benchmark_stream.dir/link.txt --verbose=1 [ 56%] Building CXX object core/demos/CMakeFiles/demo_index_shape_hash.dir/index/shape_hash.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_shape_hash.dir/index/shape_hash.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/shape_hash.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_benchmark_stream.dir/benchmark_stream.cpp.o -o ../../bin/demo_benchmark_stream -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Built target demo_benchmark_stream make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_solution3 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/solution3.cpp [ 56%] Linking CXX executable ../../bin/demo_filter_sam cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_filter_sam.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_filter_sam.dir/filter_sam.cpp.o -o ../../bin/demo_filter_sam -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Built target demo_filter_sam make -f core/demos/CMakeFiles/demo_gff_io_gff_stream_read.dir/build.make core/demos/CMakeFiles/demo_gff_io_gff_stream_read.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_gff_io_gff_stream_read.dir/DependInfo.cmake --color= Scanning dependencies of target demo_gff_io_gff_stream_read make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_gff_io_gff_stream_read.dir/build.make core/demos/CMakeFiles/demo_gff_io_gff_stream_read.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Building CXX object core/demos/CMakeFiles/demo_gff_io_gff_stream_read.dir/gff_io/gff_stream_read.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_gff_io_gff_stream_read.dir/gff_io/gff_stream_read.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/gff_io/gff_stream_read.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/annotation_converter.cpp:4: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/annotation_converter.cpp:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Linking CXX executable ../../bin/demo_index_index_open_save cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_open_save.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_open_save.dir/index/index_open_save.cpp.o -o ../../bin/demo_index_index_open_save -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Built target demo_index_index_open_save make -f core/demos/CMakeFiles/demo_index_find.dir/build.make core/demos/CMakeFiles/demo_index_find.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_find.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_find make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_find.dir/build.make core/demos/CMakeFiles/demo_index_find.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Building CXX object core/demos/CMakeFiles/demo_index_find.dir/index_find.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_find.dir/index_find.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index_find.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_getOccurrences_getFrequency_range_getFibre.cpp:1: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index/index_getOccurrences_getFrequency_range_getFibre.cpp:1: /usr/include/c++/8/new: In function 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 56%] Linking CXX executable ../../bin/demo_index_shape_hash cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_shape_hash.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_shape_hash.dir/index/shape_hash.cpp.o -o ../../bin/demo_index_shape_hash -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Built target demo_index_shape_hash make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_example3 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 56%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/example3.cpp [ 57%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_solution3 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_solution3.dir/tutorial/seed_and_extend/solution3.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_solution3 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 57%] Built target demo_tutorial_seed_and_extend_solution3 make -f core/demos/CMakeFiles/demo_tutorial_read_mapping_minimapper.dir/build.make core/demos/CMakeFiles/demo_tutorial_read_mapping_minimapper.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_read_mapping_minimapper.dir/DependInfo.cmake --color= [ 57%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_global_assignment1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_global_assignment1.dir/link.txt --verbose=1 Scanning dependencies of target demo_tutorial_read_mapping_minimapper make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_read_mapping_minimapper.dir/build.make core/demos/CMakeFiles/demo_tutorial_read_mapping_minimapper.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_global_assignment1.dir/tutorial/alignments/alignment_global_assignment1.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_global_assignment1 -lrt -lz [ 57%] Building CXX object core/demos/CMakeFiles/demo_tutorial_read_mapping_minimapper.dir/tutorial/read_mapping/minimapper.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_read_mapping_minimapper.dir/tutorial/read_mapping/minimapper.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/read_mapping/minimapper.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 57%] Built target demo_tutorial_alignments_alignment_global_assignment1 make -f core/demos/CMakeFiles/demo_index_shape_hash_init.dir/build.make core/demos/CMakeFiles/demo_index_shape_hash_init.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_shape_hash_init.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_shape_hash_init make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_shape_hash_init.dir/build.make core/demos/CMakeFiles/demo_index_shape_hash_init.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 58%] Building CXX object core/demos/CMakeFiles/demo_index_shape_hash_init.dir/index/shape_hash_init.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_shape_hash_init.dir/index/shape_hash_init.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/shape_hash_init.cpp [ 58%] Linking CXX executable ../../bin/demo_gff_io_gff_stream_read cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_gff_io_gff_stream_read.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_gff_io_gff_stream_read.dir/gff_io/gff_stream_read.cpp.o -o ../../bin/demo_gff_io_gff_stream_read -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 58%] Built target demo_gff_io_gff_stream_read make -f core/demos/CMakeFiles/demo_graph_algorithms_longest_increasing_subsequence.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_longest_increasing_subsequence.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_longest_increasing_subsequence.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_longest_increasing_subsequence make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_longest_increasing_subsequence.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_longest_increasing_subsequence.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 59%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_longest_increasing_subsequence.dir/graph_algorithms/longest_increasing_subsequence.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_longest_increasing_subsequence.dir/graph_algorithms/longest_increasing_subsequence.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/longest_increasing_subsequence.cpp [ 59%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_example3 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example3.dir/tutorial/seed_and_extend/example3.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_example3 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 59%] Built target demo_tutorial_seed_and_extend_example3 make -f core/demos/CMakeFiles/demo_index_shape_hash_next.dir/build.make core/demos/CMakeFiles/demo_index_shape_hash_next.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_shape_hash_next.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_shape_hash_next make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_shape_hash_next.dir/build.make core/demos/CMakeFiles/demo_index_shape_hash_next.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 59%] Building CXX object core/demos/CMakeFiles/demo_index_shape_hash_next.dir/index/shape_hash_next.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_shape_hash_next.dir/index/shape_hash_next.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/shape_hash_next.cpp [ 60%] Linking CXX executable ../../bin/demo_index_find cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_find.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_find.dir/index_find.cpp.o -o ../../bin/demo_index_find -lrt -lz [ 60%] Linking CXX executable ../../bin/demo_index_shape_hash_init cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_shape_hash_init.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_shape_hash_init.dir/index/shape_hash_init.cpp.o -o ../../bin/demo_index_shape_hash_init -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 60%] Built target demo_index_find make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment2.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 60%] Built target demo_index_shape_hash_init make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6.dir/DependInfo.cmake --color= [ 60%] Linking CXX executable ../../bin/demo_annotation_converter cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_annotation_converter.dir/link.txt --verbose=1 Scanning dependencies of target demo_tutorial_alignments_alignment_global_assignment2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment2.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment2.dir/build /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_annotation_converter.dir/annotation_converter.cpp.o -o ../../bin/demo_annotation_converter -lrt -lz make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 60%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment2.dir/tutorial/alignments/alignment_global_assignment2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_global_assignment2.dir/tutorial/alignments/alignment_global_assignment2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_assignment2.cpp Scanning dependencies of target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 60%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step6.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step6.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5_step6.cpp [ 60%] Linking CXX executable ../../bin/demo_graph_algorithms_longest_increasing_subsequence cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_longest_increasing_subsequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_longest_increasing_subsequence.dir/graph_algorithms/longest_increasing_subsequence.cpp.o -o ../../bin/demo_graph_algorithms_longest_increasing_subsequence -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 60%] Built target demo_annotation_converter make -f core/demos/CMakeFiles/demo_index_find_stringset.dir/build.make core/demos/CMakeFiles/demo_index_find_stringset.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_find_stringset.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_find_stringset make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_find_stringset.dir/build.make core/demos/CMakeFiles/demo_index_find_stringset.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 60%] Building CXX object core/demos/CMakeFiles/demo_index_find_stringset.dir/index_find_stringset.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_find_stringset.dir/index_find_stringset.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index_find_stringset.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 60%] Built target demo_graph_algorithms_longest_increasing_subsequence make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_local_waterman_eggert.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_local_waterman_eggert.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_local_waterman_eggert.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_local_waterman_eggert make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_local_waterman_eggert.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_local_waterman_eggert.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 60%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_local_waterman_eggert.dir/tutorial/alignments/alignment_local_waterman_eggert.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_local_waterman_eggert.dir/tutorial/alignments/alignment_local_waterman_eggert.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_local_waterman_eggert.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:36, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment4.cpp:2: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment4.cpp:1: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment4.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment4.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Linking CXX executable ../../bin/demo_index_shape_hash_next cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_shape_hash_next.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_shape_hash_next.dir/index/shape_hash_next.cpp.o -o ../../bin/demo_index_shape_hash_next -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 60%] Built target demo_index_shape_hash_next make -f core/demos/CMakeFiles/demo_index_lcp.dir/build.make core/demos/CMakeFiles/demo_index_lcp.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_lcp.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_lcp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_lcp.dir/build.make core/demos/CMakeFiles/demo_index_lcp.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 60%] Building CXX object core/demos/CMakeFiles/demo_index_lcp.dir/index_lcp.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_lcp.dir/index_lcp.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index_lcp.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:52, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_local_waterman_eggert.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::ScoreAndID; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::ScoreAndID; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'TScoreValue seqan::_smithWaterman(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentFinder&, const seqan::Score&, TScoreValue) [with TSourceH = seqan::String >; TGapsSpecH = seqan::Tag; TSourceV = seqan::String >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:730:5, inlined from 'bool seqan::nextLocalAlignment(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequenceH = seqan::String >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String >; TGapsSpecV = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30, inlined from 'bool seqan::nextLocalAlignment(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequenceH = seqan::String >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String >; TGapsSpecV = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:100:1, inlined from 'bool seqan::nextLocalAlignment(seqan::Align&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequence = seqan::String >; TAlignSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30, inlined from 'int main()' at /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_local_waterman_eggert.cpp:21:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_local_waterman_eggert.cpp:2: /usr/include/c++/8/new: In function 'int main()': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:52, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_local_waterman_eggert.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::ScoreAndID; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::ScoreAndID; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'typename seqan::LocalAlignmentFinder::TMatrixPosition seqan::_getNextBestEndPosition(seqan::LocalAlignmentFinder&, TScoreValue) [with TScoreValue = int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:673:8, inlined from 'TScoreValue seqan::_smithWatermanGetNext(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentFinder&, const seqan::Score&, TScoreValue) [with TSequenceH = seqan::String >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:756:41, inlined from 'bool seqan::nextLocalAlignment(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequenceH = seqan::String >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String >; TGapsSpecV = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37, inlined from 'bool seqan::nextLocalAlignment(seqan::Align&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequence = seqan::String >; TAlignSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30, inlined from 'int main()' at /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_local_waterman_eggert.cpp:21:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_local_waterman_eggert.cpp:2: /usr/include/c++/8/new: In function 'int main()': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/read_mapping/minimapper.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/read_mapping/minimapper.cpp:30: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_local_waterman_eggert cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_local_waterman_eggert.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_local_waterman_eggert.dir/tutorial/alignments/alignment_local_waterman_eggert.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_local_waterman_eggert -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 60%] Built target demo_tutorial_alignments_alignment_local_waterman_eggert make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 61%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5.cpp [ 62%] Linking CXX executable ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step6.cpp.o -o ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 62%] Built target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step6 make -f core/demos/CMakeFiles/demo_index_mummy.dir/build.make core/demos/CMakeFiles/demo_index_mummy.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_mummy.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_mummy make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_mummy.dir/build.make core/demos/CMakeFiles/demo_index_mummy.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 62%] Building CXX object core/demos/CMakeFiles/demo_index_mummy.dir/index_mummy.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_mummy.dir/index_mummy.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index_mummy.cpp [ 62%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_global_assignment2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_global_assignment2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_global_assignment2.dir/tutorial/alignments/alignment_global_assignment2.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_global_assignment2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 62%] Built target demo_tutorial_alignments_alignment_global_assignment2 make -f core/demos/CMakeFiles/demo_index_index_node_predicate.dir/build.make core/demos/CMakeFiles/demo_index_index_node_predicate.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_node_predicate.dir/DependInfo.cmake --color= [ 62%] Linking CXX executable ../../bin/demo_index_index_getOccurrences_getFrequency_range_getFibre cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_getOccurrences_getFrequency_range_getFibre.dir/link.txt --verbose=1 Scanning dependencies of target demo_index_index_node_predicate make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_node_predicate.dir/build.make core/demos/CMakeFiles/demo_index_index_node_predicate.dir/build /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_getOccurrences_getFrequency_range_getFibre.dir/index/index_getOccurrences_getFrequency_range_getFibre.cpp.o -o ../../bin/demo_index_index_getOccurrences_getFrequency_range_getFibre -lrt -lz make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 62%] Building CXX object core/demos/CMakeFiles/demo_index_index_node_predicate.dir/index/index_node_predicate.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_node_predicate.dir/index/index_node_predicate.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_node_predicate.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 62%] Built target demo_index_index_getOccurrences_getFrequency_range_getFibre make -f core/demos/CMakeFiles/demo_arg_parse_argument_parser.dir/build.make core/demos/CMakeFiles/demo_arg_parse_argument_parser.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_arg_parse_argument_parser.dir/DependInfo.cmake --color= Scanning dependencies of target demo_arg_parse_argument_parser make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_arg_parse_argument_parser.dir/build.make core/demos/CMakeFiles/demo_arg_parse_argument_parser.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 62%] Building CXX object core/demos/CMakeFiles/demo_arg_parse_argument_parser.dir/arg_parse/argument_parser.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_arg_parse_argument_parser.dir/arg_parse/argument_parser.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/arg_parse/argument_parser.cpp [ 62%] Linking CXX executable ../../bin/demo_tutorial_read_mapping_minimapper cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_read_mapping_minimapper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_read_mapping_minimapper.dir/tutorial/read_mapping/minimapper.cpp.o -o ../../bin/demo_tutorial_read_mapping_minimapper -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 62%] Built target demo_tutorial_read_mapping_minimapper make -f core/demos/CMakeFiles/demo_index_qgram_counts.dir/build.make core/demos/CMakeFiles/demo_index_qgram_counts.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_qgram_counts.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_qgram_counts make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_qgram_counts.dir/build.make core/demos/CMakeFiles/demo_index_qgram_counts.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 62%] Building CXX object core/demos/CMakeFiles/demo_index_qgram_counts.dir/index_qgram_counts.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_qgram_counts.dir/index_qgram_counts.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index_qgram_counts.cpp [ 62%] Linking CXX executable ../../bin/demo_tutorial_rnaseq_genequant_assignment4 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_rnaseq_genequant_assignment4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_rnaseq_genequant_assignment4.dir/tutorial/rnaseq/genequant_assignment4.cpp.o -o ../../bin/demo_tutorial_rnaseq_genequant_assignment4 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 62%] Built target demo_tutorial_rnaseq_genequant_assignment4 make -f core/demos/CMakeFiles/demo_index_sufarray.dir/build.make core/demos/CMakeFiles/demo_index_sufarray.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_sufarray.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_sufarray make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_sufarray.dir/build.make core/demos/CMakeFiles/demo_index_sufarray.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 62%] Building CXX object core/demos/CMakeFiles/demo_index_sufarray.dir/index_sufarray.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_sufarray.dir/index_sufarray.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index_sufarray.cpp [ 62%] Linking CXX executable ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5.cpp.o -o ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 62%] Built target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5 make -f core/demos/CMakeFiles/demo_index_supermaxrepeats.dir/build.make core/demos/CMakeFiles/demo_index_supermaxrepeats.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_supermaxrepeats.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_supermaxrepeats make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_supermaxrepeats.dir/build.make core/demos/CMakeFiles/demo_index_supermaxrepeats.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 63%] Building CXX object core/demos/CMakeFiles/demo_index_supermaxrepeats.dir/index_supermaxrepeats.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_supermaxrepeats.dir/index_supermaxrepeats.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index_supermaxrepeats.cpp [ 63%] Linking CXX executable ../../bin/demo_index_index_node_predicate cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_node_predicate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_node_predicate.dir/index/index_node_predicate.cpp.o -o ../../bin/demo_index_index_node_predicate -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 63%] Built target demo_index_index_node_predicate make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_global_assignment4_part1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 63%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part1.dir/tutorial/alignments/alignment_global_assignment4_part1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part1.dir/tutorial/alignments/alignment_global_assignment4_part1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_assignment4_part1.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/demos/arg_parse/argument_parser.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/arg_parse/argument_parser.cpp:1: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 63%] Linking CXX executable ../../bin/demo_index_qgram_counts cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_qgram_counts.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_qgram_counts.dir/index_qgram_counts.cpp.o -o ../../bin/demo_index_qgram_counts -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 63%] Built target demo_index_qgram_counts make -f core/demos/CMakeFiles/demo_knime_node.dir/build.make core/demos/CMakeFiles/demo_knime_node.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_knime_node.dir/DependInfo.cmake --color= Scanning dependencies of target demo_knime_node make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_knime_node.dir/build.make core/demos/CMakeFiles/demo_knime_node.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 63%] Building CXX object core/demos/CMakeFiles/demo_knime_node.dir/knime_node.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_knime_node.dir/knime_node.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/knime_node.cpp [ 64%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_global_assignment4_part1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part1.dir/tutorial/alignments/alignment_global_assignment4_part1.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_global_assignment4_part1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_tutorial_alignments_alignment_global_assignment4_part1 make -f core/demos/CMakeFiles/demo_interval_tree.dir/build.make core/demos/CMakeFiles/demo_interval_tree.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_interval_tree.dir/DependInfo.cmake --color= Scanning dependencies of target demo_interval_tree make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_interval_tree.dir/build.make core/demos/CMakeFiles/demo_interval_tree.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_interval_tree.dir/interval_tree.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_interval_tree.dir/interval_tree.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/interval_tree.cpp [ 64%] Linking CXX executable ../../bin/demo_index_sufarray cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_sufarray.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_sufarray.dir/index_sufarray.cpp.o -o ../../bin/demo_index_sufarray -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_index_sufarray make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_local_standard.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_local_standard.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_local_standard.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_local_standard make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_local_standard.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_local_standard.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_local_standard.dir/tutorial/alignments/alignment_local_standard.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_local_standard.dir/tutorial/alignments/alignment_local_standard.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_local_standard.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/index_supermaxrepeats.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8, inlined from 'bool seqan::indexCreate(seqan::Index&, FibreChildtab, seqan::Childtab) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:719:17, inlined from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27, inlined from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::String >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreChildtab_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21, inlined from 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_algs.h:150:16: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/index_supermaxrepeats.cpp:2: /usr/include/c++/8/new: In constructor 'seqan::Iter > >::Iter(TSTree&, seqan::Iter > >::TSize) [with TSTree = seqan::Index > >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 64%] Linking CXX executable ../../bin/demo_arg_parse_argument_parser cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_arg_parse_argument_parser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_arg_parse_argument_parser.dir/arg_parse/argument_parser.cpp.o -o ../../bin/demo_arg_parse_argument_parser -lrt -lz [ 64%] Linking CXX executable ../../bin/demo_index_supermaxrepeats cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_supermaxrepeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_supermaxrepeats.dir/index_supermaxrepeats.cpp.o -o ../../bin/demo_index_supermaxrepeats -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_arg_parse_argument_parser make -f core/demos/CMakeFiles/demo_misc_enumerate_strings.dir/build.make core/demos/CMakeFiles/demo_misc_enumerate_strings.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_misc_enumerate_strings.dir/DependInfo.cmake --color= Scanning dependencies of target demo_misc_enumerate_strings make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_misc_enumerate_strings.dir/build.make core/demos/CMakeFiles/demo_misc_enumerate_strings.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_misc_enumerate_strings.dir/misc/enumerate_strings.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_misc_enumerate_strings.dir/misc/enumerate_strings.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/misc/enumerate_strings.cpp [ 64%] Built target demo_index_supermaxrepeats make -f core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_2_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_2_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_2_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_annotation_store_assignment_2_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_2_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_2_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_2_solution.dir/tutorial/annotation_store/assignment_2_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_annotation_store_assignment_2_solution.dir/tutorial/annotation_store/assignment_2_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_2_solution.cpp [ 64%] Linking CXX executable ../../bin/demo_misc_enumerate_strings cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_misc_enumerate_strings.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_misc_enumerate_strings.dir/misc/enumerate_strings.cpp.o -o ../../bin/demo_misc_enumerate_strings -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_misc_enumerate_strings make -f core/demos/CMakeFiles/demo_graph_hmm.dir/build.make core/demos/CMakeFiles/demo_graph_hmm.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_hmm.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_hmm make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_hmm.dir/build.make core/demos/CMakeFiles/demo_graph_hmm.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_graph_hmm.dir/graph_hmm.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_hmm.dir/graph_hmm.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_hmm.cpp [ 64%] Linking CXX executable ../../bin/demo_index_find_stringset cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_find_stringset.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_find_stringset.dir/index_find_stringset.cpp.o -o ../../bin/demo_index_find_stringset -lrt -lz [ 64%] Linking CXX executable ../../bin/demo_interval_tree cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_interval_tree.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_interval_tree.dir/interval_tree.cpp.o -o ../../bin/demo_interval_tree -lrt -lz [ 64%] Built target demo_index_find_stringset make -f core/demos/CMakeFiles/demo_modifier_modified_string.dir/build.make core/demos/CMakeFiles/demo_modifier_modified_string.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_modifier_modified_string.dir/DependInfo.cmake --color= Scanning dependencies of target demo_modifier_modified_string make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_modifier_modified_string.dir/build.make core/demos/CMakeFiles/demo_modifier_modified_string.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_modifier_modified_string.dir/modifier/modified_string.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_modifier_modified_string.dir/modifier/modified_string.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/modifier/modified_string.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_interval_tree make -f core/demos/CMakeFiles/demo_tutorial_index_indices_assignment_2.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_indices_assignment_2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_indices_assignment_2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_indices_assignment_2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_indices_assignment_2.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_indices_assignment_2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_indices_assignment_2.dir/tutorial/index/indices_assignment_2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_indices_assignment_2.dir/tutorial/index/indices_assignment_2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/indices_assignment_2.cpp [ 64%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_local_standard cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_local_standard.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_local_standard.dir/tutorial/alignments/alignment_local_standard.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_local_standard -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_tutorial_alignments_alignment_local_standard make -f core/demos/CMakeFiles/demo_graph_algorithms_heaviest_increasing_subsequence.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_heaviest_increasing_subsequence.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_heaviest_increasing_subsequence.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_heaviest_increasing_subsequence make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_heaviest_increasing_subsequence.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_heaviest_increasing_subsequence.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_heaviest_increasing_subsequence.dir/graph_algorithms/heaviest_increasing_subsequence.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_heaviest_increasing_subsequence.dir/graph_algorithms/heaviest_increasing_subsequence.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/heaviest_increasing_subsequence.cpp [ 64%] Linking CXX executable ../../bin/demo_index_lcp cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_lcp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_lcp.dir/index_lcp.cpp.o -o ../../bin/demo_index_lcp -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_index_lcp make -f core/demos/CMakeFiles/demo_modifier_modview.dir/build.make core/demos/CMakeFiles/demo_modifier_modview.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_modifier_modview.dir/DependInfo.cmake --color= In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_2_solution.cpp:5: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_2_solution.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Scanning dependencies of target demo_modifier_modview make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_modifier_modview.dir/build.make core/demos/CMakeFiles/demo_modifier_modview.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_modifier_modview.dir/modifier_modview.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_modifier_modview.dir/modifier_modview.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/modifier_modview.cpp [ 64%] Linking CXX executable ../../bin/demo_modifier_modified_string cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_modifier_modified_string.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_modifier_modified_string.dir/modifier/modified_string.cpp.o -o ../../bin/demo_modifier_modified_string -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_modifier_modified_string make -f core/demos/CMakeFiles/demo_tutorial_store_store_diplay_aligned_reads.dir/build.make core/demos/CMakeFiles/demo_tutorial_store_store_diplay_aligned_reads.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_store_store_diplay_aligned_reads.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_store_store_diplay_aligned_reads make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_store_store_diplay_aligned_reads.dir/build.make core/demos/CMakeFiles/demo_tutorial_store_store_diplay_aligned_reads.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_tutorial_store_store_diplay_aligned_reads.dir/tutorial/store/store_diplay_aligned_reads.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_store_store_diplay_aligned_reads.dir/tutorial/store/store_diplay_aligned_reads.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/store/store_diplay_aligned_reads.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/demos/knime_node.cpp:35: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/demos/knime_node.cpp:35: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 64%] Linking CXX executable ../../bin/demo_graph_hmm cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_hmm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_hmm.dir/graph_hmm.cpp.o -o ../../bin/demo_graph_hmm -lrt -lz In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/knime_node.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/demos/knime_node.cpp:35: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_graph_hmm make -f core/demos/CMakeFiles/demo_modifier_nested.dir/build.make core/demos/CMakeFiles/demo_modifier_nested.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_modifier_nested.dir/DependInfo.cmake --color= Scanning dependencies of target demo_modifier_nested make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_modifier_nested.dir/build.make core/demos/CMakeFiles/demo_modifier_nested.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_modifier_nested.dir/modifier_nested.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_modifier_nested.dir/modifier_nested.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/modifier_nested.cpp [ 64%] Linking CXX executable ../../bin/demo_modifier_modview cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_modifier_modview.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_modifier_modview.dir/modifier_modview.cpp.o -o ../../bin/demo_modifier_modview -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_modifier_modview make -f core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modreverse.dir/build.make core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modreverse.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modreverse.dir/DependInfo.cmake --color= [ 64%] Linking CXX executable ../../bin/demo_graph_algorithms_heaviest_increasing_subsequence cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_heaviest_increasing_subsequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_heaviest_increasing_subsequence.dir/graph_algorithms/heaviest_increasing_subsequence.cpp.o -o ../../bin/demo_graph_algorithms_heaviest_increasing_subsequence -lrt -lz Scanning dependencies of target demo_tutorial_modifiers_modifier_modreverse make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modreverse.dir/build.make core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modreverse.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modreverse.dir/tutorial/modifiers/modifier_modreverse.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_modifiers_modifier_modreverse.dir/tutorial/modifiers/modifier_modreverse.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/modifiers/modifier_modreverse.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target demo_graph_algorithms_heaviest_increasing_subsequence make -f core/demos/CMakeFiles/demo_pipe_pool_sorter.dir/build.make core/demos/CMakeFiles/demo_pipe_pool_sorter.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_pipe_pool_sorter.dir/DependInfo.cmake --color= Scanning dependencies of target demo_pipe_pool_sorter make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_pipe_pool_sorter.dir/build.make core/demos/CMakeFiles/demo_pipe_pool_sorter.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object core/demos/CMakeFiles/demo_pipe_pool_sorter.dir/pipe/pool_sorter.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_pipe_pool_sorter.dir/pipe/pool_sorter.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/pipe/pool_sorter.cpp [ 64%] Linking CXX executable ../../bin/demo_tutorial_annotation_store_assignment_2_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_annotation_store_assignment_2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_annotation_store_assignment_2_solution.dir/tutorial/annotation_store/assignment_2_solution.cpp.o -o ../../bin/demo_tutorial_annotation_store_assignment_2_solution -lrt -lz [ 64%] Linking CXX executable ../../bin/demo_tutorial_index_indices_assignment_2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_indices_assignment_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_indices_assignment_2.dir/tutorial/index/indices_assignment_2.cpp.o -o ../../bin/demo_tutorial_index_indices_assignment_2 -lrt -lz [ 65%] Linking CXX executable ../../bin/demo_modifier_nested cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_modifier_nested.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_modifier_nested.dir/modifier_nested.cpp.o -o ../../bin/demo_modifier_nested -lrt -lz [ 65%] Built target demo_tutorial_annotation_store_assignment_2_solution make -f core/demos/CMakeFiles/demo_sam2svg.dir/build.make core/demos/CMakeFiles/demo_sam2svg.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_sam2svg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 65%] Built target demo_tutorial_index_indices_assignment_2 make -f core/demos/CMakeFiles/demo_tutorial_index_index_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_assignment1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_index_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_sam2svg make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_sam2svg.dir/build.make core/demos/CMakeFiles/demo_sam2svg.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 65%] Building CXX object core/demos/CMakeFiles/demo_sam2svg.dir/sam2svg.cpp.o [ 65%] Built target demo_modifier_nested make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment2_align.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment2_align.dir/depend cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_sam2svg.dir/sam2svg.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/sam2svg.cpp make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment2_align.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_index_assignment1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_index_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_assignment1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_alignments_alignment2_align make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment2_align.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment2_align.dir/build [ 65%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_index_assignment1.dir/tutorial/index/index_assignment1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_index_assignment1.dir/tutorial/index/index_assignment1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment1.cpp make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 65%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment2_align.dir/tutorial/alignments/alignment2_align.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment2_align.dir/tutorial/alignments/alignment2_align.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment2_align.cpp [ 65%] Linking CXX executable ../../bin/demo_tutorial_modifiers_modifier_modreverse cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_modifier_modreverse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_modifiers_modifier_modreverse.dir/tutorial/modifiers/modifier_modreverse.cpp.o -o ../../bin/demo_tutorial_modifiers_modifier_modreverse -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 65%] Built target demo_tutorial_modifiers_modifier_modreverse make -f core/demos/CMakeFiles/demo_sample_seqs.dir/build.make core/demos/CMakeFiles/demo_sample_seqs.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_sample_seqs.dir/DependInfo.cmake --color= Scanning dependencies of target demo_sample_seqs make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_sample_seqs.dir/build.make core/demos/CMakeFiles/demo_sample_seqs.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 65%] Building CXX object core/demos/CMakeFiles/demo_sample_seqs.dir/sample_seqs.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_sample_seqs.dir/sample_seqs.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/sample_seqs.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/demos/pipe/pool_sorter.cpp:4: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::PageBucketExtended; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended; TLess = seqan::MergeStreamComparer]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = int; TPoolSpec = seqan::SorterSpec >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler > >, seqan::Tag >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pool_base.h:664:11, inlined from 'void seqan::Pool::pop() [with TValue = int; TSpec = seqan::SorterSpec >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pool_base.h:914:4, inlined from 'void seqan::pop(seqan::Pool&) [with TValue = int; TSpec = seqan::SorterSpec >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pool_base.h:1154:9, inlined from 'int main()' at /build/seqan-1.4.2+dfsg/core/demos/pipe/pool_sorter.cpp:38:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/functional:53, from /build/seqan-1.4.2+dfsg/core/demos/pipe/pool_sorter.cpp:1: /usr/include/c++/8/new: In function 'int main()': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 65%] Linking CXX executable ../../bin/demo_pipe_pool_sorter cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_pipe_pool_sorter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_pipe_pool_sorter.dir/pipe/pool_sorter.cpp.o -o ../../bin/demo_pipe_pool_sorter -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 65%] Built target demo_pipe_pool_sorter make -f core/demos/CMakeFiles/demo_graph_algorithms_breadth_first_search.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_breadth_first_search.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_graph_algorithms_breadth_first_search.dir/DependInfo.cmake --color= Scanning dependencies of target demo_graph_algorithms_breadth_first_search make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_graph_algorithms_breadth_first_search.dir/build.make core/demos/CMakeFiles/demo_graph_algorithms_breadth_first_search.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 65%] Building CXX object core/demos/CMakeFiles/demo_graph_algorithms_breadth_first_search.dir/graph_algorithms/breadth_first_search.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_graph_algorithms_breadth_first_search.dir/graph_algorithms/breadth_first_search.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/graph_algorithms/breadth_first_search.cpp [ 66%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment2_align cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment2_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment2_align.dir/tutorial/alignments/alignment2_align.cpp.o -o ../../bin/demo_tutorial_alignments_alignment2_align -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 66%] Built target demo_tutorial_alignments_alignment2_align make -f core/demos/CMakeFiles/demo_score_score.dir/build.make core/demos/CMakeFiles/demo_score_score.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_score_score.dir/DependInfo.cmake --color= Scanning dependencies of target demo_score_score make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_score_score.dir/build.make core/demos/CMakeFiles/demo_score_score.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 67%] Building CXX object core/demos/CMakeFiles/demo_score_score.dir/score/score.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_score_score.dir/score/score.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/score/score.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/store/store_diplay_aligned_reads.cpp:3: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/store/store_diplay_aligned_reads.cpp:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Linking CXX executable ../../bin/demo_graph_algorithms_breadth_first_search cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_graph_algorithms_breadth_first_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_graph_algorithms_breadth_first_search.dir/graph_algorithms/breadth_first_search.cpp.o -o ../../bin/demo_graph_algorithms_breadth_first_search -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 67%] Built target demo_graph_algorithms_breadth_first_search make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_solution4 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 67%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/solution4.cpp [ 67%] Linking CXX executable ../../bin/demo_knime_node cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_knime_node.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_knime_node.dir/knime_node.cpp.o -o ../../bin/demo_knime_node -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 67%] Built target demo_knime_node make -f core/demos/CMakeFiles/demo_seeds_seeds_add_seed.dir/build.make core/demos/CMakeFiles/demo_seeds_seeds_add_seed.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_seeds_seeds_add_seed.dir/DependInfo.cmake --color= Scanning dependencies of target demo_seeds_seeds_add_seed make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_seeds_seeds_add_seed.dir/build.make core/demos/CMakeFiles/demo_seeds_seeds_add_seed.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 67%] Building CXX object core/demos/CMakeFiles/demo_seeds_seeds_add_seed.dir/seeds/seeds_add_seed.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_seeds_seeds_add_seed.dir/seeds/seeds_add_seed.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/seeds/seeds_add_seed.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/sample_seqs.cpp:44: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/sample_seqs.cpp:37: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/sam2svg.cpp:6: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/sam2svg.cpp:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Linking CXX executable ../../bin/demo_sample_seqs cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sample_seqs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_sample_seqs.dir/sample_seqs.cpp.o -o ../../bin/demo_sample_seqs -lrt -lz [ 67%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_solution4 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_solution4.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_solution4.dir/tutorial/sequence_io/solution4.cpp.o -o ../../bin/demo_tutorial_sequence_io_solution4 -lrt -lz [ 67%] Built target demo_sample_seqs make -f core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modcomplementdna.dir/build.make core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modcomplementdna.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modcomplementdna.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_modifiers_modifier_modcomplementdna make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modcomplementdna.dir/build.make core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modcomplementdna.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 68%] Building CXX object core/demos/CMakeFiles/demo_tutorial_modifiers_modifier_modcomplementdna.dir/tutorial/modifiers/modifier_modcomplementdna.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_modifiers_modifier_modcomplementdna.dir/tutorial/modifiers/modifier_modcomplementdna.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/modifiers/modifier_modcomplementdna.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 68%] Built target demo_tutorial_sequence_io_solution4 make -f core/demos/CMakeFiles/demo_index_find_repeats.dir/build.make core/demos/CMakeFiles/demo_index_find_repeats.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_find_repeats.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_find_repeats make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_find_repeats.dir/build.make core/demos/CMakeFiles/demo_index_find_repeats.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 68%] Building CXX object core/demos/CMakeFiles/demo_index_find_repeats.dir/index/find_repeats.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_find_repeats.dir/index/find_repeats.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/find_repeats.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment1.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_assignment1.cpp:2: /usr/include/c++/8/new: In function 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 68%] Linking CXX executable ../../bin/demo_seeds_seeds_add_seed cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_seeds_seeds_add_seed.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_seeds_seeds_add_seed.dir/seeds/seeds_add_seed.cpp.o -o ../../bin/demo_seeds_seeds_add_seed -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 68%] Built target demo_seeds_seeds_add_seed make -f core/demos/CMakeFiles/demo_seeds_seeds_extension.dir/build.make core/demos/CMakeFiles/demo_seeds_seeds_extension.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_seeds_seeds_extension.dir/DependInfo.cmake --color= Scanning dependencies of target demo_seeds_seeds_extension make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_seeds_seeds_extension.dir/build.make core/demos/CMakeFiles/demo_seeds_seeds_extension.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 68%] Building CXX object core/demos/CMakeFiles/demo_seeds_seeds_extension.dir/seeds/seeds_extension.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_seeds_seeds_extension.dir/seeds/seeds_extension.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/seeds/seeds_extension.cpp [ 68%] Linking CXX executable ../../bin/demo_index_mummy cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_mummy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_mummy.dir/index_mummy.cpp.o -o ../../bin/demo_index_mummy -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 68%] Built target demo_index_mummy make -f core/demos/CMakeFiles/demo_segmentalignment.dir/build.make core/demos/CMakeFiles/demo_segmentalignment.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_segmentalignment.dir/DependInfo.cmake --color= Scanning dependencies of target demo_segmentalignment make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_segmentalignment.dir/build.make core/demos/CMakeFiles/demo_segmentalignment.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 68%] Building CXX object core/demos/CMakeFiles/demo_segmentalignment.dir/segmentalignment.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_segmentalignment.dir/segmentalignment.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/segmentalignment.cpp [ 68%] Linking CXX executable ../../bin/demo_score_score cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_score_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_score_score.dir/score/score.cpp.o -o ../../bin/demo_score_score -lrt -lz [ 68%] Linking CXX executable ../../bin/demo_tutorial_modifiers_modifier_modcomplementdna cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_modifiers_modifier_modcomplementdna.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_modifiers_modifier_modcomplementdna.dir/tutorial/modifiers/modifier_modcomplementdna.cpp.o -o ../../bin/demo_tutorial_modifiers_modifier_modcomplementdna -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 68%] Built target demo_score_score make -f core/demos/CMakeFiles/demo_seq_io_sequence_stream_read.dir/build.make core/demos/CMakeFiles/demo_seq_io_sequence_stream_read.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_seq_io_sequence_stream_read.dir/DependInfo.cmake --color= Scanning dependencies of target demo_seq_io_sequence_stream_read make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_seq_io_sequence_stream_read.dir/build.make core/demos/CMakeFiles/demo_seq_io_sequence_stream_read.dir/build make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 68%] Built target demo_tutorial_modifiers_modifier_modcomplementdna make -f core/demos/CMakeFiles/demo_file_format.dir/build.make core/demos/CMakeFiles/demo_file_format.dir/depend [ 68%] Building CXX object core/demos/CMakeFiles/demo_seq_io_sequence_stream_read.dir/seq_io/sequence_stream_read.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_seq_io_sequence_stream_read.dir/seq_io/sequence_stream_read.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/seq_io/sequence_stream_read.cpp make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_file_format.dir/DependInfo.cmake --color= Scanning dependencies of target demo_file_format make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_file_format.dir/build.make core/demos/CMakeFiles/demo_file_format.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 69%] Building CXX object core/demos/CMakeFiles/demo_file_format.dir/file_format.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_file_format.dir/file_format.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/file_format.cpp [ 70%] Linking CXX executable ../../bin/demo_tutorial_store_store_diplay_aligned_reads cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_store_store_diplay_aligned_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_store_store_diplay_aligned_reads.dir/tutorial/store/store_diplay_aligned_reads.cpp.o -o ../../bin/demo_tutorial_store_store_diplay_aligned_reads -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 70%] Built target demo_tutorial_store_store_diplay_aligned_reads make -f core/demos/CMakeFiles/demo_seq_io_sequence_stream_write.dir/build.make core/demos/CMakeFiles/demo_seq_io_sequence_stream_write.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_seq_io_sequence_stream_write.dir/DependInfo.cmake --color= Scanning dependencies of target demo_seq_io_sequence_stream_write make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_seq_io_sequence_stream_write.dir/build.make core/demos/CMakeFiles/demo_seq_io_sequence_stream_write.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 70%] Building CXX object core/demos/CMakeFiles/demo_seq_io_sequence_stream_write.dir/seq_io/sequence_stream_write.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_seq_io_sequence_stream_write.dir/seq_io/sequence_stream_write.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/seq_io/sequence_stream_write.cpp [ 70%] Linking CXX executable ../../bin/demo_file_format cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_file_format.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_file_format.dir/file_format.cpp.o -o ../../bin/demo_file_format -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 70%] Built target demo_file_format make -f core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_2_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_2_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_2_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_iterators_iterators_assignment_2_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_2_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_2_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 70%] Building CXX object core/demos/CMakeFiles/demo_tutorial_iterators_iterators_assignment_2_solution.dir/tutorial/iterators/iterators_assignment_2_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_iterators_iterators_assignment_2_solution.dir/tutorial/iterators/iterators_assignment_2_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/iterators/iterators_assignment_2_solution.cpp [ 70%] Linking CXX executable ../../bin/demo_seeds_seeds_extension cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_seeds_seeds_extension.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_seeds_seeds_extension.dir/seeds/seeds_extension.cpp.o -o ../../bin/demo_seeds_seeds_extension -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 70%] Built target demo_seeds_seeds_extension make -f core/demos/CMakeFiles/demo_tutorial_find_find_assignment2_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_assignment2_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_find_find_assignment2_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_find_find_assignment2_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_find_find_assignment2_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_assignment2_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 70%] Building CXX object core/demos/CMakeFiles/demo_tutorial_find_find_assignment2_solution.dir/tutorial/find/find_assignment2_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_find_find_assignment2_solution.dir/tutorial/find/find_assignment2_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_assignment2_solution.cpp [ 71%] Linking CXX executable ../../bin/demo_tutorial_iterators_iterators_assignment_2_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_iterators_iterators_assignment_2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_iterators_iterators_assignment_2_solution.dir/tutorial/iterators/iterators_assignment_2_solution.cpp.o -o ../../bin/demo_tutorial_iterators_iterators_assignment_2_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 71%] Built target demo_tutorial_iterators_iterators_assignment_2_solution make -f core/demos/CMakeFiles/demo_sequence_infix.dir/build.make core/demos/CMakeFiles/demo_sequence_infix.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_sequence_infix.dir/DependInfo.cmake --color= Scanning dependencies of target demo_sequence_infix make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_sequence_infix.dir/build.make core/demos/CMakeFiles/demo_sequence_infix.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 71%] Building CXX object core/demos/CMakeFiles/demo_sequence_infix.dir/sequence/infix.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_sequence_infix.dir/sequence/infix.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/sequence/infix.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/index/find_repeats.cpp:5: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/index/find_repeats.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/seq_io/sequence_stream_read.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/demos/seq_io/sequence_stream_read.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Linking CXX executable ../../bin/demo_tutorial_find_find_assignment2_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_find_find_assignment2_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_find_find_assignment2_solution.dir/tutorial/find/find_assignment2_solution.cpp.o -o ../../bin/demo_tutorial_find_find_assignment2_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 71%] Built target demo_tutorial_find_find_assignment2_solution make -f core/demos/CMakeFiles/demo_tutorial_find_find_assignment3.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_assignment3.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_find_find_assignment3.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_find_find_assignment3 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_find_find_assignment3.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_assignment3.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 71%] Building CXX object core/demos/CMakeFiles/demo_tutorial_find_find_assignment3.dir/tutorial/find/find_assignment3.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_find_find_assignment3.dir/tutorial/find/find_assignment3.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_assignment3.cpp [ 71%] Linking CXX executable ../../bin/demo_sequence_infix cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sequence_infix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_sequence_infix.dir/sequence/infix.cpp.o -o ../../bin/demo_sequence_infix -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 71%] Built target demo_sequence_infix make -f core/demos/CMakeFiles/demo_sequence_prefix.dir/build.make core/demos/CMakeFiles/demo_sequence_prefix.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_sequence_prefix.dir/DependInfo.cmake --color= Scanning dependencies of target demo_sequence_prefix make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_sequence_prefix.dir/build.make core/demos/CMakeFiles/demo_sequence_prefix.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 71%] Building CXX object core/demos/CMakeFiles/demo_sequence_prefix.dir/sequence/prefix.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_sequence_prefix.dir/sequence/prefix.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/sequence/prefix.cpp [ 71%] Linking CXX executable ../../bin/demo_sam2svg cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sam2svg.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_sam2svg.dir/sam2svg.cpp.o -o ../../bin/demo_sam2svg -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 71%] Built target demo_sam2svg make -f core/demos/CMakeFiles/demo_sequence_string.dir/build.make core/demos/CMakeFiles/demo_sequence_string.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_sequence_string.dir/DependInfo.cmake --color= Scanning dependencies of target demo_sequence_string make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_sequence_string.dir/build.make core/demos/CMakeFiles/demo_sequence_string.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 72%] Building CXX object core/demos/CMakeFiles/demo_sequence_string.dir/sequence/string.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_sequence_string.dir/sequence/string.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/sequence/string.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/seq_io/sequence_stream_write.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/demos/seq_io/sequence_stream_write.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 72%] Linking CXX executable ../../bin/demo_index_find_repeats cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_find_repeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_find_repeats.dir/index/find_repeats.cpp.o -o ../../bin/demo_index_find_repeats -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 72%] Built target demo_index_find_repeats make -f core/demos/CMakeFiles/demo_input_output_record_reader.dir/build.make core/demos/CMakeFiles/demo_input_output_record_reader.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_input_output_record_reader.dir/DependInfo.cmake --color= Scanning dependencies of target demo_input_output_record_reader make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_input_output_record_reader.dir/build.make core/demos/CMakeFiles/demo_input_output_record_reader.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 72%] Building CXX object core/demos/CMakeFiles/demo_input_output_record_reader.dir/input_output/record_reader.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_input_output_record_reader.dir/input_output/record_reader.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/input_output/record_reader.cpp [ 72%] Linking CXX executable ../../bin/demo_seq_io_sequence_stream_read cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_seq_io_sequence_stream_read.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_seq_io_sequence_stream_read.dir/seq_io/sequence_stream_read.cpp.o -o ../../bin/demo_seq_io_sequence_stream_read -lrt -lz [ 72%] Linking CXX executable ../../bin/demo_sequence_prefix cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sequence_prefix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_sequence_prefix.dir/sequence/prefix.cpp.o -o ../../bin/demo_sequence_prefix -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 72%] Built target demo_seq_io_sequence_stream_read make -f core/demos/CMakeFiles/demo_modifier_modreverse.dir/build.make core/demos/CMakeFiles/demo_modifier_modreverse.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_modifier_modreverse.dir/DependInfo.cmake --color= Scanning dependencies of target demo_modifier_modreverse make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_modifier_modreverse.dir/build.make core/demos/CMakeFiles/demo_modifier_modreverse.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 72%] Built target demo_sequence_prefix make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_representation_ag_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_representation_ag_assignment1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_representation_ag_assignment1.dir/DependInfo.cmake --color= [ 72%] Building CXX object core/demos/CMakeFiles/demo_modifier_modreverse.dir/modifier_modreverse.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_modifier_modreverse.dir/modifier_modreverse.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/modifier_modreverse.cpp Scanning dependencies of target demo_tutorial_alignments_alignment_representation_ag_assignment1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_representation_ag_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_representation_ag_assignment1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 72%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_representation_ag_assignment1.dir/tutorial/alignments/alignment_representation_ag_assignment1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_representation_ag_assignment1.dir/tutorial/alignments/alignment_representation_ag_assignment1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_representation_ag_assignment1.cpp [ 72%] Linking CXX executable ../../bin/demo_sequence_string cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sequence_string.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_sequence_string.dir/sequence/string.cpp.o -o ../../bin/demo_sequence_string -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 72%] Built target demo_sequence_string make -f core/demos/CMakeFiles/demo_tutorial_find_find_assignment3_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_assignment3_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_find_find_assignment3_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_find_find_assignment3_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_find_find_assignment3_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_find_find_assignment3_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 73%] Building CXX object core/demos/CMakeFiles/demo_tutorial_find_find_assignment3_solution.dir/tutorial/find/find_assignment3_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_find_find_assignment3_solution.dir/tutorial/find/find_assignment3_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/find/find_assignment3_solution.cpp [ 73%] Linking CXX executable ../../bin/demo_tutorial_find_find_assignment3 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_find_find_assignment3.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_find_find_assignment3.dir/tutorial/find/find_assignment3.cpp.o -o ../../bin/demo_tutorial_find_find_assignment3 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target demo_tutorial_find_find_assignment3 make -f core/demos/CMakeFiles/demo_sequence_stringset.dir/build.make core/demos/CMakeFiles/demo_sequence_stringset.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_sequence_stringset.dir/DependInfo.cmake --color= Scanning dependencies of target demo_sequence_stringset make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_sequence_stringset.dir/build.make core/demos/CMakeFiles/demo_sequence_stringset.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 73%] Building CXX object core/demos/CMakeFiles/demo_sequence_stringset.dir/sequence/stringset.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_sequence_stringset.dir/sequence/stringset.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/sequence/stringset.cpp [ 73%] Linking CXX executable ../../bin/demo_tutorial_index_index_assignment1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_index_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_index_assignment1.dir/tutorial/index/index_assignment1.cpp.o -o ../../bin/demo_tutorial_index_index_assignment1 -lrt -lz [ 73%] Linking CXX executable ../../bin/demo_seq_io_sequence_stream_write cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_seq_io_sequence_stream_write.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_seq_io_sequence_stream_write.dir/seq_io/sequence_stream_write.cpp.o -o ../../bin/demo_seq_io_sequence_stream_write -lrt -lz [ 73%] Linking CXX executable ../../bin/demo_modifier_modreverse cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_modifier_modreverse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_modifier_modreverse.dir/modifier_modreverse.cpp.o -o ../../bin/demo_modifier_modreverse -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target demo_tutorial_index_index_assignment1 make -f core/demos/CMakeFiles/demo_sequence_length.dir/build.make core/demos/CMakeFiles/demo_sequence_length.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_sequence_length.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target demo_seq_io_sequence_stream_write make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example8.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example8.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example8.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target demo_modifier_modreverse make -f core/demos/CMakeFiles/demo_soft_to_hard_masking.dir/build.make core/demos/CMakeFiles/demo_soft_to_hard_masking.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_soft_to_hard_masking.dir/DependInfo.cmake --color= Scanning dependencies of target demo_sequence_length make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_sequence_length.dir/build.make core/demos/CMakeFiles/demo_sequence_length.dir/build Scanning dependencies of target demo_soft_to_hard_masking make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_soft_to_hard_masking.dir/build.make core/demos/CMakeFiles/demo_soft_to_hard_masking.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target demo_tutorial_seed_and_extend_example8 make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example8.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example8.dir/build [ 74%] Building CXX object core/demos/CMakeFiles/demo_sequence_length.dir/sequence_length.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_sequence_length.dir/sequence_length.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/sequence_length.cpp make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 74%] Building CXX object core/demos/CMakeFiles/demo_soft_to_hard_masking.dir/soft_to_hard_masking.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_soft_to_hard_masking.dir/soft_to_hard_masking.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/soft_to_hard_masking.cpp [ 75%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example8.dir/tutorial/seed_and_extend/example8.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_example8.dir/tutorial/seed_and_extend/example8.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/example8.cpp [ 75%] Linking CXX executable ../../bin/demo_sequence_stringset cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sequence_stringset.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_sequence_stringset.dir/sequence/stringset.cpp.o -o ../../bin/demo_sequence_stringset -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_sequence_stringset make -f core/demos/CMakeFiles/demo_align_global_alignment_banded.dir/build.make core/demos/CMakeFiles/demo_align_global_alignment_banded.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_align_global_alignment_banded.dir/DependInfo.cmake --color= Scanning dependencies of target demo_align_global_alignment_banded make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_align_global_alignment_banded.dir/build.make core/demos/CMakeFiles/demo_align_global_alignment_banded.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object core/demos/CMakeFiles/demo_align_global_alignment_banded.dir/align/global_alignment_banded.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_align_global_alignment_banded.dir/align/global_alignment_banded.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/align/global_alignment_banded.cpp [ 75%] Linking CXX executable ../../bin/demo_soft_to_hard_masking cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_soft_to_hard_masking.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_soft_to_hard_masking.dir/soft_to_hard_masking.cpp.o -o ../../bin/demo_soft_to_hard_masking -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_soft_to_hard_masking make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_representation_ag.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_representation_ag.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_representation_ag.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_representation_ag make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_representation_ag.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_representation_ag.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_representation_ag.dir/tutorial/alignments/alignment_representation_ag.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_representation_ag.dir/tutorial/alignments/alignment_representation_ag.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_representation_ag.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/input_output/record_reader.cpp:4: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/input_output/record_reader.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Linking CXX executable ../../bin/demo_tutorial_find_find_assignment3_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_find_find_assignment3_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_find_find_assignment3_solution.dir/tutorial/find/find_assignment3_solution.cpp.o -o ../../bin/demo_tutorial_find_find_assignment3_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_tutorial_find_find_assignment3_solution make -f core/demos/CMakeFiles/demo_store_store_example.dir/build.make core/demos/CMakeFiles/demo_store_store_example.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_store_store_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_store_store_example make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_store_store_example.dir/build.make core/demos/CMakeFiles/demo_store_store_example.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object core/demos/CMakeFiles/demo_store_store_example.dir/store/store_example.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_store_store_example.dir/store/store_example.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/store/store_example.cpp [ 75%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_representation_ag_assignment1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_representation_ag_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_representation_ag_assignment1.dir/tutorial/alignments/alignment_representation_ag_assignment1.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_representation_ag_assignment1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_tutorial_alignments_alignment_representation_ag_assignment1 make -f core/demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make core/demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_generic_programming_template_subclassing make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build.make core/demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object core/demos/CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/generic_programming/template_subclassing.cpp [ 75%] Linking CXX executable ../../bin/demo_tutorial_generic_programming_template_subclassing cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_generic_programming_template_subclassing.dir/tutorial/generic_programming/template_subclassing.cpp.o -o ../../bin/demo_tutorial_generic_programming_template_subclassing -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_tutorial_generic_programming_template_subclassing make -f core/demos/CMakeFiles/demo_index_index_begin_atEnd_representative_bottomUp.dir/build.make core/demos/CMakeFiles/demo_index_index_begin_atEnd_representative_bottomUp.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_index_index_begin_atEnd_representative_bottomUp.dir/DependInfo.cmake --color= Scanning dependencies of target demo_index_index_begin_atEnd_representative_bottomUp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_index_index_begin_atEnd_representative_bottomUp.dir/build.make core/demos/CMakeFiles/demo_index_index_begin_atEnd_representative_bottomUp.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object core/demos/CMakeFiles/demo_index_index_begin_atEnd_representative_bottomUp.dir/index/index_begin_atEnd_representative_bottomUp.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_index_index_begin_atEnd_representative_bottomUp.dir/index/index_begin_atEnd_representative_bottomUp.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/index/index_begin_atEnd_representative_bottomUp.cpp [ 75%] Linking CXX executable ../../bin/demo_input_output_record_reader cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_input_output_record_reader.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_input_output_record_reader.dir/input_output/record_reader.cpp.o -o ../../bin/demo_input_output_record_reader -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_input_output_record_reader make -f core/demos/CMakeFiles/demo_sequence_string2.dir/build.make core/demos/CMakeFiles/demo_sequence_string2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_sequence_string2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_sequence_string2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_sequence_string2.dir/build.make core/demos/CMakeFiles/demo_sequence_string2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object core/demos/CMakeFiles/demo_sequence_string2.dir/sequence/string2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_sequence_string2.dir/sequence/string2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/sequence/string2.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/sequence_length.cpp:5: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/demos/sequence_length.cpp:4: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Linking CXX executable ../../bin/demo_sequence_string2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sequence_string2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_sequence_string2.dir/sequence/string2.cpp.o -o ../../bin/demo_sequence_string2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_sequence_string2 make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_align_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_align_assignment1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_align_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_align_assignment1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_align_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_align_assignment1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_align_assignment1.dir/tutorial/alignments/alignment_align_assignment1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_align_assignment1.dir/tutorial/alignments/alignment_align_assignment1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_align_assignment1.cpp [ 75%] Linking CXX executable ../../bin/demo_sequence_length cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sequence_length.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_sequence_length.dir/sequence_length.cpp.o -o ../../bin/demo_sequence_length -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_sequence_length make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_banded.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_banded.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_banded.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_banded make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_banded.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_banded.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_banded.dir/tutorial/alignments/alignment_banded.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_banded.dir/tutorial/alignments/alignment_banded.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_banded.cpp [ 75%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_representation_ag cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_representation_ag.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_representation_ag.dir/tutorial/alignments/alignment_representation_ag.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_representation_ag -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_tutorial_alignments_alignment_representation_ag make -f core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_string_sets_assignment_1_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object core/demos/CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/tutorial/string_sets/assignment_1_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/tutorial/string_sets/assignment_1_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/string_sets/assignment_1_solution.cpp [ 75%] Linking CXX executable ../../bin/demo_align_global_alignment_banded cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_align_global_alignment_banded.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_align_global_alignment_banded.dir/align/global_alignment_banded.cpp.o -o ../../bin/demo_align_global_alignment_banded -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_align_global_alignment_banded make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_gaps.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_gaps.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_gaps.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_gaps make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_gaps.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_gaps.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_gaps.dir/tutorial/alignments/alignment_gaps.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_gaps.dir/tutorial/alignments/alignment_gaps.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_gaps.cpp [ 75%] Linking CXX executable ../../bin/demo_index_index_begin_atEnd_representative_bottomUp cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_index_index_begin_atEnd_representative_bottomUp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_index_index_begin_atEnd_representative_bottomUp.dir/index/index_begin_atEnd_representative_bottomUp.cpp.o -o ../../bin/demo_index_index_begin_atEnd_representative_bottomUp -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_index_index_begin_atEnd_representative_bottomUp make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part2.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_global_assignment4_part2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part2.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part2.dir/tutorial/alignments/alignment_global_assignment4_part2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part2.dir/tutorial/alignments/alignment_global_assignment4_part2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_global_assignment4_part2.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/store/store_example.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/store/store_example.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_align_assignment1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_align_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_align_assignment1.dir/tutorial/alignments/alignment_align_assignment1.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_align_assignment1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target demo_tutorial_alignments_alignment_align_assignment1 make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global2.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_pairwise_global2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global2.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 76%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global2.dir/tutorial/alignments/alignment_pairwise_global2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global2.dir/tutorial/alignments/alignment_pairwise_global2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_global2.cpp [ 76%] Linking CXX executable ../../bin/demo_tutorial_string_sets_assignment_1_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_string_sets_assignment_1_solution.dir/tutorial/string_sets/assignment_1_solution.cpp.o -o ../../bin/demo_tutorial_string_sets_assignment_1_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 76%] Built target demo_tutorial_string_sets_assignment_1_solution make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_pairwise_global make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 76%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global.dir/tutorial/alignments/alignment_pairwise_global.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global.dir/tutorial/alignments/alignment_pairwise_global.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_global.cpp [ 76%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_gaps cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_gaps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_gaps.dir/tutorial/alignments/alignment_gaps.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_gaps -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 76%] Built target demo_tutorial_alignments_alignment_gaps make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example4.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example4.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_sequence_io_example4.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_sequence_io_example4 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_sequence_io_example4.dir/build.make core/demos/CMakeFiles/demo_tutorial_sequence_io_example4.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 77%] Building CXX object core/demos/CMakeFiles/demo_tutorial_sequence_io_example4.dir/tutorial/sequence_io/example4.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_sequence_io_example4.dir/tutorial/sequence_io/example4.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example4.cpp [ 77%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_banded cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_banded.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_banded.dir/tutorial/alignments/alignment_banded.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_banded -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target demo_tutorial_alignments_alignment_banded make -f core/demos/CMakeFiles/demo_random_random.dir/build.make core/demos/CMakeFiles/demo_random_random.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_random_random.dir/DependInfo.cmake --color= Scanning dependencies of target demo_random_random make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_random_random.dir/build.make core/demos/CMakeFiles/demo_random_random.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 77%] Building CXX object core/demos/CMakeFiles/demo_random_random.dir/random/random.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_random_random.dir/random/random.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/random/random.cpp [ 77%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_global_assignment4_part2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_global_assignment4_part2.dir/tutorial/alignments/alignment_global_assignment4_part2.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_global_assignment4_part2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target demo_tutorial_alignments_alignment_global_assignment4_part2 make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_pairwise_global_assignment1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 77%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment1.dir/tutorial/alignments/alignment_pairwise_global_assignment1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment1.dir/tutorial/alignments/alignment_pairwise_global_assignment1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_global_assignment1.cpp [ 77%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_pairwise_global cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global.dir/tutorial/alignments/alignment_pairwise_global.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_pairwise_global -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target demo_tutorial_alignments_alignment_pairwise_global make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_pairwise_local make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 77%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local.dir/tutorial/alignments/alignment_pairwise_local.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local.dir/tutorial/alignments/alignment_pairwise_local.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local.cpp [ 78%] Linking CXX executable ../../bin/demo_random_random cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_random_random.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_random_random.dir/random/random.cpp.o -o ../../bin/demo_random_random -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 78%] Built target demo_random_random make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local_assignment1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local_assignment1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_alignment_pairwise_local_assignment1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local_assignment1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local_assignment1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 78%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local_assignment1.dir/tutorial/alignments/alignment_pairwise_local_assignment1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local_assignment1.dir/tutorial/alignments/alignment_pairwise_local_assignment1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp [ 78%] Linking CXX executable ../../bin/demo_store_store_example cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_store_store_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_store_store_example.dir/store/store_example.cpp.o -o ../../bin/demo_store_store_example -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 78%] Built target demo_store_store_example make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment5.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment5.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_rnaseq_genequant_assignment5 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment5.dir/build.make core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment5.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object core/demos/CMakeFiles/demo_tutorial_rnaseq_genequant_assignment5.dir/tutorial/rnaseq/genequant_assignment5.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_rnaseq_genequant_assignment5.dir/tutorial/rnaseq/genequant_assignment5.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment5.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example4.cpp:4: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/sequence_io/example4.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 79%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_pairwise_global2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global2.dir/tutorial/alignments/alignment_pairwise_global2.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_pairwise_global2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target demo_tutorial_alignments_alignment_pairwise_global2 make -f core/demos/CMakeFiles/demo_seq_io_fai_index_example.dir/build.make core/demos/CMakeFiles/demo_seq_io_fai_index_example.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_seq_io_fai_index_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_seq_io_fai_index_example make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_seq_io_fai_index_example.dir/build.make core/demos/CMakeFiles/demo_seq_io_fai_index_example.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object core/demos/CMakeFiles/demo_seq_io_fai_index_example.dir/seq_io/fai_index_example.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_seq_io_fai_index_example.dir/seq_io/fai_index_example.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/seq_io/fai_index_example.cpp [ 79%] Linking CXX executable ../../bin/demo_segmentalignment cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_segmentalignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_segmentalignment.dir/segmentalignment.cpp.o -o ../../bin/demo_segmentalignment -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target demo_segmentalignment make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step1.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step1.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5_step1.cpp [ 79%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_pairwise_global_assignment1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_pairwise_global_assignment1.dir/tutorial/alignments/alignment_pairwise_global_assignment1.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_pairwise_global_assignment1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target demo_tutorial_alignments_alignment_pairwise_global_assignment1 make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5_step2.cpp [ 79%] Linking CXX executable ../../bin/demo_tutorial_sequence_io_example4 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_sequence_io_example4.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_sequence_io_example4.dir/tutorial/sequence_io/example4.cpp.o -o ../../bin/demo_tutorial_sequence_io_example4 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target demo_tutorial_sequence_io_example4 make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_seed_and_extend_example2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build.make core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object core/demos/CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/tutorial/seed_and_extend/example2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/tutorial/seed_and_extend/example2.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/seed_and_extend/example2.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:52, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::ScoreAndID; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::ScoreAndID; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'TScoreValue seqan::_smithWaterman(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentFinder&, const seqan::Score&, TScoreValue) [with TSourceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSourceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:730:5, inlined from 'bool seqan::nextLocalAlignment(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequenceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30, inlined from 'bool seqan::nextLocalAlignment(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequenceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:100:1, inlined from 'bool seqan::nextLocalAlignment(seqan::Align&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequence = seqan::String, seqan::Alloc<> >; TAlignSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30, inlined from 'int main()' at /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp:19:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp:2: /usr/include/c++/8/new: In function 'int main()': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:52, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::ScoreAndID; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::ScoreAndID; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'typename seqan::LocalAlignmentFinder::TMatrixPosition seqan::_getNextBestEndPosition(seqan::LocalAlignmentFinder&, TScoreValue) [with TScoreValue = int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:673:8, inlined from 'TScoreValue seqan::_smithWatermanGetNext(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentFinder&, const seqan::Score&, TScoreValue) [with TSequenceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:756:41, inlined from 'bool seqan::nextLocalAlignment(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequenceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37, inlined from 'bool seqan::nextLocalAlignment(seqan::Align&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequence = seqan::String, seqan::Alloc<> >; TAlignSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30, inlined from 'int main()' at /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp:19:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local_assignment1.cpp:2: /usr/include/c++/8/new: In function 'int main()': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 79%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_pairwise_local_assignment1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local_assignment1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local_assignment1.dir/tutorial/alignments/alignment_pairwise_local_assignment1.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_pairwise_local_assignment1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target demo_tutorial_alignments_alignment_pairwise_local_assignment1 make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5 In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:52, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::ScoreAndID; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::ScoreAndID; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'TScoreValue seqan::_smithWaterman(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentFinder&, const seqan::Score&, TScoreValue) [with TSourceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSourceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:730:5, inlined from 'bool seqan::nextLocalAlignment(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequenceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:105:30, inlined from 'bool seqan::nextLocalAlignment(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequenceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:100:1, inlined from 'bool seqan::nextLocalAlignment(seqan::Align&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequence = seqan::String, seqan::Alloc<> >; TAlignSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30, inlined from 'int main()' at /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local.cpp:30:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local.cpp:2: /usr/include/c++/8/new: In function 'int main()': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5.dir/build.make core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5.dir/build In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:52, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local.cpp:3: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::ScoreAndID; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::ScoreAndID; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'typename seqan::LocalAlignmentFinder::TMatrixPosition seqan::_getNextBestEndPosition(seqan::LocalAlignmentFinder&, TScoreValue) [with TScoreValue = int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:673:8, inlined from 'TScoreValue seqan::_smithWatermanGetNext(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentFinder&, const seqan::Score&, TScoreValue) [with TSequenceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue = int; TScoreSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:756:41, inlined from 'bool seqan::nextLocalAlignment(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequenceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:107:37, inlined from 'bool seqan::nextLocalAlignment(seqan::Align&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequence = seqan::String, seqan::Alloc<> >; TAlignSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_unbanded.h:117:30, inlined from 'int main()' at /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local.cpp:30:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/alignment_pairwise_local.cpp:2: /usr/include/c++/8/new: In function 'int main()': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object core/demos/CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step5.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step5.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/alignments/pairwise_sequence_alignment_assignment5_step5.cpp [ 79%] Linking CXX executable ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step1.cpp.o -o ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Built target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step1 make -f core/demos/CMakeFiles/demo_parallel_splitter_example.dir/build.make core/demos/CMakeFiles/demo_parallel_splitter_example.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_parallel_splitter_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_parallel_splitter_example make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_parallel_splitter_example.dir/build.make core/demos/CMakeFiles/demo_parallel_splitter_example.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 79%] Building CXX object core/demos/CMakeFiles/demo_parallel_splitter_example.dir/parallel/splitter_example.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_parallel_splitter_example.dir/parallel/splitter_example.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/parallel/splitter_example.cpp [ 80%] Linking CXX executable ../../bin/demo_tutorial_alignments_alignment_pairwise_local cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_alignment_pairwise_local.dir/tutorial/alignments/alignment_pairwise_local.cpp.o -o ../../bin/demo_tutorial_alignments_alignment_pairwise_local -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target demo_tutorial_alignments_alignment_pairwise_local make -f core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_1_hint.dir/build.make core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_1_hint.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_1_hint.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_annotation_store_assignment_1_hint make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_1_hint.dir/build.make core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_1_hint.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 80%] Building CXX object core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_1_hint.dir/tutorial/annotation_store/assignment_1_hint.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_annotation_store_assignment_1_hint.dir/tutorial/annotation_store/assignment_1_hint.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_1_hint.cpp [ 80%] Linking CXX executable ../../bin/demo_parallel_splitter_example cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_parallel_splitter_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_parallel_splitter_example.dir/parallel/splitter_example.cpp.o -o ../../bin/demo_parallel_splitter_example -lrt -lz [ 80%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_example2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/link.txt --verbose=1 In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/demos/seq_io/fai_index_example.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/demos/seq_io/fai_index_example.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example2.dir/tutorial/seed_and_extend/example2.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_example2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target demo_parallel_splitter_example make -f core/demos/CMakeFiles/demo_tutorial_index_index_property_maps.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_property_maps.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_index_index_property_maps.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target demo_tutorial_seed_and_extend_example2 make -f core/demos/CMakeFiles/demo_misc_interval_tree_example.dir/build.make core/demos/CMakeFiles/demo_misc_interval_tree_example.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_misc_interval_tree_example.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_index_index_property_maps make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_index_index_property_maps.dir/build.make core/demos/CMakeFiles/demo_tutorial_index_index_property_maps.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 80%] Building CXX object core/demos/CMakeFiles/demo_tutorial_index_index_property_maps.dir/tutorial/index/index_property_maps.cpp.o Scanning dependencies of target demo_misc_interval_tree_example make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_index_index_property_maps.dir/tutorial/index/index_property_maps.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/index/index_property_maps.cpp make -f core/demos/CMakeFiles/demo_misc_interval_tree_example.dir/build.make core/demos/CMakeFiles/demo_misc_interval_tree_example.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 80%] Building CXX object core/demos/CMakeFiles/demo_misc_interval_tree_example.dir/misc/interval_tree_example.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_misc_interval_tree_example.dir/misc/interval_tree_example.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/misc/interval_tree_example.cpp [ 80%] Linking CXX executable ../../bin/demo_tutorial_seed_and_extend_example8 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_seed_and_extend_example8.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_seed_and_extend_example8.dir/tutorial/seed_and_extend/example8.cpp.o -o ../../bin/demo_tutorial_seed_and_extend_example8 -lrt -lz [ 81%] Linking CXX executable ../../bin/demo_seq_io_fai_index_example cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_seq_io_fai_index_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_seq_io_fai_index_example.dir/seq_io/fai_index_example.cpp.o -o ../../bin/demo_seq_io_fai_index_example -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 81%] Built target demo_seq_io_fai_index_example make -f core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_1_solution.dir/depend [ 81%] Built target demo_tutorial_seed_and_extend_example8 make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_1_solution.dir/DependInfo.cmake --color= make -f core/tests/align/CMakeFiles/test_align.dir/build.make core/tests/align/CMakeFiles/test_align.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/align /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/align /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/align/CMakeFiles/test_align.dir/DependInfo.cmake --color= Scanning dependencies of target demo_tutorial_annotation_store_assignment_1_solution make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_1_solution.dir/build.make core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_1_solution.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 81%] Building CXX object core/demos/CMakeFiles/demo_tutorial_annotation_store_assignment_1_solution.dir/tutorial/annotation_store/assignment_1_solution.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/demo_tutorial_annotation_store_assignment_1_solution.dir/tutorial/annotation_store/assignment_1_solution.cpp.o -c /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_1_solution.cpp Scanning dependencies of target test_align make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/align/CMakeFiles/test_align.dir/build.make core/tests/align/CMakeFiles/test_align.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 81%] Building CXX object core/tests/align/CMakeFiles/test_align.dir/test_align.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/align && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_align.dir/test_align.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp [ 81%] Linking CXX executable ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step2.cpp.o -o ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 81%] Built target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step2 make -f core/tests/arg_parse/CMakeFiles/test_arg_parse.dir/build.make core/tests/arg_parse/CMakeFiles/test_arg_parse.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/arg_parse /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/arg_parse /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/arg_parse/CMakeFiles/test_arg_parse.dir/DependInfo.cmake --color= Scanning dependencies of target test_arg_parse make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/arg_parse/CMakeFiles/test_arg_parse.dir/build.make core/tests/arg_parse/CMakeFiles/test_arg_parse.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 82%] Building CXX object core/tests/arg_parse/CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/arg_parse && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/arg_parse/test_arg_parse.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:36, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment5.cpp:2: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment5.cpp:1: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment5.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/rnaseq/genequant_assignment5.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/arg_parse/test_arg_parse.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align_stream.h:40, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align_stream.h:40, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ [ 83%] Linking CXX executable ../../bin/demo_tutorial_index_index_property_maps cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_index_index_property_maps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_index_index_property_maps.dir/tutorial/index/index_property_maps.cpp.o -o ../../bin/demo_tutorial_index_index_property_maps -lrt -lz In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_1_hint.cpp:5: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_1_hint.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 83%] Built target demo_tutorial_index_index_property_maps make -f core/tests/bam_io/CMakeFiles/test_bam_io.dir/build.make core/tests/bam_io/CMakeFiles/test_bam_io.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/bam_io /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/bam_io /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/bam_io/CMakeFiles/test_bam_io.dir/DependInfo.cmake --color= [ 83%] Linking CXX executable ../../bin/demo_misc_interval_tree_example cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_misc_interval_tree_example.dir/link.txt --verbose=1 Scanning dependencies of target test_bam_io make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/bam_io/CMakeFiles/test_bam_io.dir/build.make core/tests/bam_io/CMakeFiles/test_bam_io.dir/build /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_misc_interval_tree_example.dir/misc/interval_tree_example.cpp.o -o ../../bin/demo_misc_interval_tree_example -lrt -lz make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 83%] Building CXX object core/tests/bam_io/CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/bam_io && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/bam_io/test_bam_io.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 83%] Built target demo_misc_interval_tree_example make -f core/tests/basic/CMakeFiles/test_basic_iterator.dir/build.make core/tests/basic/CMakeFiles/test_basic_iterator.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_iterator.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_iterator make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_iterator.dir/build.make core/tests/basic/CMakeFiles/test_basic_iterator.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 83%] Building CXX object core/tests/basic/CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_iterator.cpp [ 83%] Linking CXX executable ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5.dir/tutorial/alignments/pairwise_sequence_alignment_assignment5_step5.cpp.o -o ../../bin/demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5 -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 83%] Built target demo_tutorial_alignments_pairwise_sequence_alignment_assignment5_step5 make -f core/tests/basic/CMakeFiles/test_basic_proxy.dir/build.make core/tests/basic/CMakeFiles/test_basic_proxy.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_proxy.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_proxy make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_proxy.dir/build.make core/tests/basic/CMakeFiles/test_basic_proxy.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 84%] Building CXX object core/tests/basic/CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_proxy.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/bam_io/test_bam_io.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:48, from /build/seqan-1.4.2+dfsg/core/tests/bam_io/test_bam_alignment_record.h:43, from /build/seqan-1.4.2+dfsg/core/tests/bam_io/test_bam_io.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:48, from /build/seqan-1.4.2+dfsg/core/tests/bam_io/test_bam_alignment_record.h:43, from /build/seqan-1.4.2+dfsg/core/tests/bam_io/test_bam_io.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ [ 84%] Linking CXX executable ../../../bin/test_basic_proxy cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_proxy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_proxy.dir/test_basic_proxy.cpp.o -o ../../../bin/test_basic_proxy -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 84%] Built target test_basic_proxy make -f core/tests/basic/CMakeFiles/test_basic_container.dir/build.make core/tests/basic/CMakeFiles/test_basic_container.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_container.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_container make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_container.dir/build.make core/tests/basic/CMakeFiles/test_basic_container.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 84%] Building CXX object core/tests/basic/CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_container.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:62, from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_stream.h:50, from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:107, from /build/seqan-1.4.2+dfsg/core/tests/bam_io/test_bam_alignment_record.h:43, from /build/seqan-1.4.2+dfsg/core/tests/bam_io/test_bam_io.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alignQualityStoreLengthPre == 0u) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' sortAlignedReads(store.alignedReadStore, SortBeginPos()); ^~~~~~~~~~~~~~~~ [ 84%] Linking CXX executable ../../../bin/test_basic_iterator cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_iterator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_iterator.dir/test_basic_iterator.cpp.o -o ../../../bin/test_basic_iterator -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 84%] Built target test_basic_iterator make -f core/tests/basic/CMakeFiles/test_basic_math.dir/build.make core/tests/basic/CMakeFiles/test_basic_math.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_math.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_math make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_math.dir/build.make core/tests/basic/CMakeFiles/test_basic_math.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 85%] Building CXX object core/tests/basic/CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_math.cpp [ 85%] Linking CXX executable ../../bin/demo_tutorial_annotation_store_assignment_1_hint cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_annotation_store_assignment_1_hint.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_annotation_store_assignment_1_hint.dir/tutorial/annotation_store/assignment_1_hint.cpp.o -o ../../bin/demo_tutorial_annotation_store_assignment_1_hint -lrt -lz In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_1_solution.cpp:5: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/istream:38, from /usr/include/c++/8/fstream:38, from /build/seqan-1.4.2+dfsg/core/demos/tutorial/annotation_store/assignment_1_solution.cpp:1: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 85%] Built target demo_tutorial_annotation_store_assignment_1_hint make -f core/tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make core/tests/basic/CMakeFiles/test_basic_parallelism.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_parallelism.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_parallelism make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_parallelism.dir/build.make core/tests/basic/CMakeFiles/test_basic_parallelism.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 85%] Building CXX object core/tests/basic/CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_parallelism.cpp [ 86%] Linking CXX executable ../../../bin/test_basic_container cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_container.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_container.dir/test_basic_container.cpp.o -o ../../../bin/test_basic_container -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target test_basic_container make -f core/tests/basic/CMakeFiles/test_basic_allocator.dir/build.make core/tests/basic/CMakeFiles/test_basic_allocator.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_allocator.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_allocator make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_allocator.dir/build.make core/tests/basic/CMakeFiles/test_basic_allocator.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 87%] Building CXX object core/tests/basic/CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_allocator.cpp [ 87%] Linking CXX executable ../../../bin/test_basic_math cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_math.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_math.dir/test_basic_math.cpp.o -o ../../../bin/test_basic_math -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 87%] Built target test_basic_math make -f core/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make core/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_metaprogramming make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build.make core/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 87%] Building CXX object core/tests/basic/CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_metaprogramming.cpp [ 87%] Linking CXX executable ../../../bin/test_basic_parallelism cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_parallelism.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_parallelism.dir/test_basic_parallelism.cpp.o -o ../../../bin/test_basic_parallelism -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 87%] Built target test_basic_parallelism make -f core/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make core/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_smart_pointer make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build.make core/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 87%] Building CXX object core/tests/basic/CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_smart_pointer.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/align/test_alignment_dp_traceback.h:183:15: required from 'void SEQAN_TEST_test_align2_traceback_linear_unbanded_alignment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:386:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/align/test_alignment_algorithms_band_position.h:48:16: required from 'void SEQAN_TEST_test_alignment_algorithms_band_position_case1() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:400:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/align/test_evaluate_alignment.h:40:20: required from 'void SEQAN_TEST_test_align_compute_alignment_stats() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:621:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ [ 87%] Linking CXX executable ../../../bin/test_basic_metaprogramming cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_metaprogramming.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_metaprogramming.dir/test_basic_metaprogramming.cpp.o -o ../../../bin/test_basic_metaprogramming -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 87%] Built target test_basic_metaprogramming make -f core/tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make core/tests/basic/CMakeFiles/test_basic_fundamental.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_fundamental.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_fundamental make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_fundamental.dir/build.make core/tests/basic/CMakeFiles/test_basic_fundamental.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 87%] Building CXX object core/tests/basic/CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_fundamental.cpp [ 87%] Linking CXX executable ../../../bin/test_basic_allocator cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_allocator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_allocator.dir/test_basic_allocator.cpp.o -o ../../../bin/test_basic_allocator -lrt [ 88%] Linking CXX executable ../../bin/demo_tutorial_annotation_store_assignment_1_solution cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_annotation_store_assignment_1_solution.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_annotation_store_assignment_1_solution.dir/tutorial/annotation_store/assignment_1_solution.cpp.o -o ../../bin/demo_tutorial_annotation_store_assignment_1_solution -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target test_basic_allocator make -f core/tests/basic/CMakeFiles/test_basic_exception.dir/build.make core/tests/basic/CMakeFiles/test_basic_exception.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_exception.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target test_basic_exception make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_exception.dir/build.make core/tests/basic/CMakeFiles/test_basic_exception.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target demo_tutorial_annotation_store_assignment_1_solution make -f core/tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make core/tests/basic/CMakeFiles/test_basic_alphabet.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_alphabet.dir/DependInfo.cmake --color= [ 88%] Building CXX object core/tests/basic/CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_exception.cpp Scanning dependencies of target test_basic_alphabet make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_alphabet.dir/build.make core/tests/basic/CMakeFiles/test_basic_alphabet.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object core/tests/basic/CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_alphabet.cpp [ 88%] Linking CXX executable ../../../bin/test_basic_smart_pointer cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_smart_pointer.dir/link.txt --verbose=1 In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1477:56: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/align/align_traceback.h:171:13: required from 'void seqan::_alignTracePrint(seqan::AlignTraceback&, const TSequenceH&, const TSequenceV&, TId, TPos, TId, TPos, TPos, TTraceValue) [with TSize = long unsigned int; TSequenceH = seqan::String, seqan::Alloc<> >; TSequenceV = seqan::String, seqan::Alloc<> >; TId = unsigned int; TPos = long unsigned int; TTraceValue = unsigned char]' /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:40: required from 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal) [with TScoreValue = int; TSequenceH = seqan::String, seqan::Alloc<> >; TSequenceV = seqan::String, seqan::Alloc<> >; TId = unsigned int; TScore = const seqan::Score >; TDiagonal = int]' /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:533:79: required from 'TScoreValue seqan::_localAlignment(seqan::LocalAlignmentFinder&, seqan::Gaps&, seqan::Gaps&, const seqan::Score&, TScoreValue, TDiagonal, TDiagonal, seqan::BandedWatermanEggert) [with TScoreValue = int; TSequenceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag; TScoreValue2 = int; TScoreSpec = seqan::Tag; TDiagonal = int; seqan::BandedWatermanEggert = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_enumeration_banded.h:106:31: required from 'bool seqan::nextLocalAlignment(seqan::Gaps&, seqan::Gaps&, seqan::LocalAlignmentEnumerator, seqan::Tag >&) [with TScoreValue = int; TScoreSpec = seqan::Tag; TSequenceH = seqan::String, seqan::Alloc<> >; TGapsSpecH = seqan::Tag; TSequenceV = seqan::String, seqan::Alloc<> >; TGapsSpecV = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/align/test_alignment_algorithms_local_banded.h:417:9: required from 'void SEQAN_TEST_test_align_local_alignment_enumeration_banded_gaps() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:567:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_smart_pointer.dir/test_basic_smart_pointer.cpp.o -o ../../../bin/test_basic_smart_pointer -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target test_basic_smart_pointer make -f core/tests/basic/CMakeFiles/test_basic_concept.dir/build.make core/tests/basic/CMakeFiles/test_basic_concept.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_concept.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_concept make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_concept.dir/build.make core/tests/basic/CMakeFiles/test_basic_concept.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object core/tests/basic/CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_concept.cpp In file included from /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_exception.cpp:38: /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_exception.h: In instantiation of 'void SEQAN_TEST_test_basic_exception_try_catch() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_exception.cpp:44:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_exception.h:142:29: warning: catching polymorphic type 'seqan::Exception' {aka 'class std::exception'} by value [-Wcatch-value=] #define SEQAN_CATCH(E) catch(E) ^~~~~ /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_exception.h:46:5: note: in expansion of macro 'SEQAN_CATCH' SEQAN_CATCH(Exception) ^~~~~~~~~~~ /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_exception.h: In instantiation of 'void SEQAN_TEST_test_basic_exception_bad_alloc() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_exception.cpp:45:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_exception.h:142:29: warning: catching polymorphic type 'seqan::BadAlloc' {aka 'class std::bad_alloc'} by value [-Wcatch-value=] #define SEQAN_CATCH(E) catch(E) ^~~~~ /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_exception.h:60:5: note: in expansion of macro 'SEQAN_CATCH' SEQAN_CATCH(BadAlloc) ^~~~~~~~~~~ /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_exception.h: In instantiation of 'void SEQAN_TEST_test_basic_exception_runtime_error() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]': /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_exception.cpp:46:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_exception.h:142:29: warning: catching polymorphic type 'seqan::RuntimeError' {aka 'class std::runtime_error'} by value [-Wcatch-value=] #define SEQAN_CATCH(E) catch(E) ^~~~~ /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_exception.h:74:5: note: in expansion of macro 'SEQAN_CATCH' SEQAN_CATCH(RuntimeError) ^~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/arg_parse/test_arg_parse.cpp:38: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = std::__cxx11::basic_string; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /build/seqan-1.4.2+dfsg/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/arg_parse/test_arg_parse.cpp:38: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 88%] Linking CXX executable ../../../bin/test_basic_exception cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_exception.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_exception.dir/test_basic_exception.cpp.o -o ../../../bin/test_basic_exception -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target test_basic_exception make -f core/tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make core/tests/basic/CMakeFiles/test_basic_aggregate.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic/CMakeFiles/test_basic_aggregate.dir/DependInfo.cmake --color= Scanning dependencies of target test_basic_aggregate make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/basic/CMakeFiles/test_basic_aggregate.dir/build.make core/tests/basic/CMakeFiles/test_basic_aggregate.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object core/tests/basic/CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/basic/test_basic_aggregate.cpp [ 88%] Linking CXX executable ../../../bin/test_basic_concept cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_concept.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_concept.dir/test_basic_concept.cpp.o -o ../../../bin/test_basic_concept -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target test_basic_concept make -f core/tests/consensus/CMakeFiles/test_consensus.dir/build.make core/tests/consensus/CMakeFiles/test_consensus.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/consensus /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/consensus /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/consensus/CMakeFiles/test_consensus.dir/DependInfo.cmake --color= [ 88%] Linking CXX executable ../../../bin/test_basic_fundamental cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_fundamental.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_fundamental.dir/test_basic_fundamental.cpp.o -o ../../../bin/test_basic_fundamental -lrt Scanning dependencies of target test_consensus make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/consensus/CMakeFiles/test_consensus.dir/build.make core/tests/consensus/CMakeFiles/test_consensus.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object core/tests/consensus/CMakeFiles/test_consensus.dir/test_consensus.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/consensus && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_consensus.dir/test_consensus.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target test_basic_fundamental make -f core/tests/file/CMakeFiles/test_file.dir/build.make core/tests/file/CMakeFiles/test_file.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/file /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/file /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/file/CMakeFiles/test_file.dir/DependInfo.cmake --color= Scanning dependencies of target test_file make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/file/CMakeFiles/test_file.dir/build.make core/tests/file/CMakeFiles/test_file.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object core/tests/file/CMakeFiles/test_file.dir/test_file.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/file && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_file.dir/test_file.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp [ 88%] Linking CXX executable ../../bin/demo_tutorial_rnaseq_genequant_assignment5 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/demos && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_tutorial_rnaseq_genequant_assignment5.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/demo_tutorial_rnaseq_genequant_assignment5.dir/tutorial/rnaseq/genequant_assignment5.cpp.o -o ../../bin/demo_tutorial_rnaseq_genequant_assignment5 -lrt -lz In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:42, from /build/seqan-1.4.2+dfsg/core/include/seqan/consensus.h:37, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.h:39, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target demo_tutorial_rnaseq_genequant_assignment5 make -f core/tests/find/CMakeFiles/test_find.dir/build.make core/tests/find/CMakeFiles/test_find.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/find /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/find /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/find/CMakeFiles/test_find.dir/DependInfo.cmake --color= Scanning dependencies of target test_find make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/find/CMakeFiles/test_find.dir/build.make core/tests/find/CMakeFiles/test_find.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object core/tests/find/CMakeFiles/test_find.dir/test_find.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/find && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_find.dir/test_find.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/include/seqan/consensus.h:42, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.h:39, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/include/seqan/consensus.h:42, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.h:39, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa.h:48, from /build/seqan-1.4.2+dfsg/core/include/seqan/consensus.h:43, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.h:39, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String&, seqan::Graph >&)': /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (unsigned i = 0; i < length(mat); ++i) ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' String<__int64> av; // Average branch length to a combined node ^~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa.h:49, from /build/seqan-1.4.2+dfsg/core/include/seqan/consensus.h:43, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.h:39, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet&, TNames&, seqan::FastaAlign)': /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atEnd(reader)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' TString seq; ^~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TNames&, seqan::FastaAlign)': /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atEnd(reader)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' String mat; ^~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa.h:49, from /build/seqan-1.4.2+dfsg/core/include/seqan/consensus.h:43, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.h:39, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TStringSet&, const TNames&, MummerLib)': /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atEnd(reader)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' TName seq1; ^~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph >&, TNames&, NewickFormat)': /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atEnd(reader)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' TVertexDescriptor lastVertex = nilVertex; ^~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.h:39, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.h:39, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:42, from /build/seqan-1.4.2+dfsg/core/include/seqan/find.h:45, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:54: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:62, from /build/seqan-1.4.2+dfsg/core/include/seqan/consensus.h:44, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.h:39, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alignQualityStoreLengthPre == 0u) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' sortAlignedReads(store.alignedReadStore, SortBeginPos()); ^~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/tests/bam_io/test_bam_alignment_record.h:43, from /build/seqan-1.4.2+dfsg/core/tests/bam_io/test_bam_io.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/bam_io/test_bam_io.cpp:35: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/file/file_filereader.h:118:10: required from 'seqan::String >::String(TFile&) [with TValue = seqan::SimpleType; TFormat = seqan::Tag; TFile = _IO_FILE*; TSpec = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/file/test_file.h:1075:40: required from 'void SEQAN_TEST_test_file_reader_string() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:68:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/consensus.h:48, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.h:39, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(seqan::FragmentStore&, TGappedConsensus&, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/consensus/consensus_base.h:387:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/consensus/consensus_base.h:389:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' diff = (itGaps->gapPos - itGaps->seqPos); ^~~~ In file included from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:57: /build/seqan-1.4.2+dfsg/core/tests/find/test_find_myers_banded.h: In function 'bool testMyersUkkonen(TString, TString, int, bool)': /build/seqan-1.4.2+dfsg/core/tests/find/test_find_myers_banded.h:82:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (unsigned i = 0; i <= length(seq1); ++i) ^~~ /build/seqan-1.4.2+dfsg/core/tests/find/test_find_myers_banded.h:85:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (IsSameType::VALUE) ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::FileReader > >; TExpand = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String, seqan::FileReader > >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::String, seqan::FileReader > >]' /build/seqan-1.4.2+dfsg/core/tests/file/test_file.h:1267:8: required from 'void SEQAN_TEST_test_file_reader_string3() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:72:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/file/file_format_fasta.h:299:8: required from 'void seqan::read(TFile&, TData&, TSize, seqan::Fasta) [with TFile = _IO_FILE*; TData = seqan::String, seqan::Alloc<> >; TSize = long unsigned int; seqan::Fasta = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/file/file_format_fasta.h:338:6: required from 'void seqan::read(TFile&, TData&, seqan::Fasta) [with TFile = _IO_FILE*; TData = seqan::String, seqan::Alloc<> >; seqan::Fasta = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/file/test_file.h:575:29: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::FileReader > >; TExpand = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String, seqan::FileReader > >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = seqan::String, seqan::FileReader > >]' /build/seqan-1.4.2+dfsg/core/tests/file/test_file.h:1267:8: required from 'void SEQAN_TEST_test_file_reader_string3() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:72:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/file/test_file.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ [ 88%] Linking CXX executable ../../../bin/test_basic_aggregate cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_aggregate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_aggregate.dir/test_basic_aggregate.cpp.o -o ../../../bin/test_basic_aggregate -lrt [ 88%] Linking CXX executable ../../../bin/test_basic_alphabet cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/basic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_basic_alphabet.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_basic_alphabet.dir/test_basic_alphabet.cpp.o -o ../../../bin/test_basic_alphabet -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target test_basic_aggregate make -f core/tests/gff_io/CMakeFiles/test_gff_io.dir/build.make core/tests/gff_io/CMakeFiles/test_gff_io.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/gff_io /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/gff_io /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/gff_io/CMakeFiles/test_gff_io.dir/DependInfo.cmake --color= Scanning dependencies of target test_gff_io make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/gff_io/CMakeFiles/test_gff_io.dir/build.make core/tests/gff_io/CMakeFiles/test_gff_io.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object core/tests/gff_io/CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/gff_io && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/gff_io/test_gff_io.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target test_basic_alphabet make -f core/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make core/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_algorithms /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/DependInfo.cmake --color= Scanning dependencies of target test_graph_algorithms make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build.make core/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object core/tests/graph_algorithms/CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_algorithms && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/find.h:83, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:54: /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_myers_ukkonen.h: In instantiation of 'typename seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >::TWord seqan::_myersGetBitmask(seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >&, TValue, TShift, seqan::False) [with TNeedle = seqan::String >; TSpec = seqan::FindInfix; TFinderCSP = seqan::NMatchesAll_; TPatternCSP = seqan::NMatchesAll_; TFindBeginPatternSpec = void; TValue = long unsigned int; TShift = short unsigned int; typename seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >::TWord = unsigned char]': /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_myers_ukkonen.h:1546:38: required from 'bool seqan::_findMyersSmallPatternsBanded(TFinder&, const TNeedle&, seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >&, TDoPatternSearch) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TNeedle2 = seqan::String >; TSpec = seqan::FindInfix; TFinderCSP = seqan::NMatchesAll_; TPatternCSP = seqan::NMatchesAll_; TFindBeginPatternSpec = void; TDoPatternSearch = seqan::True]' /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_myers_ukkonen.h:1680:39: required from 'bool seqan::find(TFinder&, const TNeedle&, seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >&) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TNeedle2 = seqan::String >; TSpec = seqan::FindInfix; TFinderCSP = seqan::NMatchesAll_; TPatternCSP = seqan::NMatchesAll_; TFindBeginPatternSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_myers_ukkonen.h:1766:13: required from 'bool seqan::find(TFinder&, const TNeedle&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TNeedle2 = seqan::String >; TSpec = seqan::AlignTextBanded; TFindBeginPatternSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/find/test_find_myers_banded.h:181:5: required from 'void testCSPImpl(TText&, TNeedle&, int) [with TFinderCSP = seqan::NMatchesAll_; TPatternCSP = seqan::NMatchesAll_; TText = seqan::String >; TNeedle = seqan::String >]' /build/seqan-1.4.2+dfsg/core/tests/find/test_find_myers_banded.h:200:51: required from 'void SEQAN_TEST_test_myers_find_banded_csp() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:1740:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_myers_ukkonen.h:1013:57: warning: left shift of negative value [-Wshift-negative-value] return (shift < BitsPerValue::VALUE)? -1 << shift: -1; ~~~^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_myers_ukkonen.h: In instantiation of 'typename seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >::TWord seqan::_myersGetBitmask(seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >&, TValue, TShift, seqan::False) [with TNeedle = seqan::String >; TSpec = seqan::FindInfix; TFinderCSP = seqan::NMatchesAll_; TPatternCSP = seqan::NMatchesN_; TFindBeginPatternSpec = void; TValue = long unsigned int; TShift = short unsigned int; typename seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >::TWord = unsigned char]': /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_myers_ukkonen.h:1546:38: required from 'bool seqan::_findMyersSmallPatternsBanded(TFinder&, const TNeedle&, seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >&, TDoPatternSearch) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TNeedle2 = seqan::String >; TSpec = seqan::FindInfix; TFinderCSP = seqan::NMatchesAll_; TPatternCSP = seqan::NMatchesN_; TFindBeginPatternSpec = void; TDoPatternSearch = seqan::True]' /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_myers_ukkonen.h:1680:39: required from 'bool seqan::find(TFinder&, const TNeedle&, seqan::PatternState_, seqan::True, TFindBeginPatternSpec> >&) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TNeedle2 = seqan::String >; TSpec = seqan::FindInfix; TFinderCSP = seqan::NMatchesAll_; TPatternCSP = seqan::NMatchesN_; TFindBeginPatternSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_myers_ukkonen.h:1766:13: required from 'bool seqan::find(TFinder&, const TNeedle&, seqan::PatternState_ >&, int) [with TFinder = seqan::Finder > >; TNeedle = seqan::String >; TNeedle2 = seqan::String >; TSpec = seqan::AlignTextBanded; TFindBeginPatternSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/find/test_find_myers_banded.h:181:5: required from 'void testCSPImpl(TText&, TNeedle&, int) [with TFinderCSP = seqan::NMatchesAll_; TPatternCSP = seqan::NMatchesN_; TText = seqan::String >; TNeedle = seqan::String >]' /build/seqan-1.4.2+dfsg/core/tests/find/test_find_myers_banded.h:201:51: required from 'void SEQAN_TEST_test_myers_find_banded_csp() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:1740:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_myers_ukkonen.h:1013:57: warning: left shift of negative value [-Wshift-negative-value] In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/find/test_find_myers_banded.h:189:20: required from 'void SEQAN_TEST_test_myers_find_banded_csp() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:1740:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TValue = seqan::SimpleType; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/consensus/consensus_realign.h:776:15: required from 'void seqan::reAlign(seqan::FragmentStore&, TScore&, TId, TMethod, TBandwidth, bool) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TScore = seqan::Score >, seqan::Score > > >; TId = int; TMethod = int; TBandwidth = int]' /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus_realign.h:65:12: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:40:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/find/test_find_myers_banded.h:214:14: required from 'void testMyersFindBanded() [with TFindSpec = seqan::FindInfix]' /build/seqan-1.4.2+dfsg/core/tests/find/test_find_myers_banded.h:240:32: required from 'void SEQAN_TEST_test_myers_find_banded() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:1739:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/gff_io/test_gff_io.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; TId = unsigned int; typename seqan::Size::TReadStore>::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:1429:19: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; typename seqan::Size::TReadStore>::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/consensus/consensus_realign.h:627:13: required from 'void seqan::reAlign(seqan::FragmentStore&, TScore&, TId, TMethod, TBandwidth, bool) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TScore = seqan::Score >, seqan::Score > > >; TId = int; TMethod = int; TBandwidth = int]' /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus_realign.h:65:12: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:40:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; TId = unsigned int; typename seqan::Size::TReadStore>::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:1429:19: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; typename seqan::Size::TReadStore>::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/consensus/consensus_realign.h:627:13: required from 'void seqan::reAlign(seqan::FragmentStore&, TScore&, TId, TMethod, TBandwidth, bool) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TScore = seqan::Score >, seqan::Score > > >; TId = int; TMethod = int; TBandwidth = int]' /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus_realign.h:65:12: required from 'void SEQAN_TEST_test_consensus_realign_one_contig_small() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:40:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:43, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:56, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/consensus.h:44, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.h:39, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] insertGaps(it, cigar[i].count); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h:535:13: note: here case 'I': ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps, seqan::Alloc<> > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] insertGaps(it, cigar[i].count); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h:535:13: note: here case 'I': ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps, seqan::Alloc<> > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=] insertGaps(it, cigar[i].count); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h:565:13: note: here case 'D': ^~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.h:1130:25: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ [ 88%] Linking CXX executable ../../../bin/test_arg_parse cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/arg_parse && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_arg_parse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_arg_parse.dir/test_arg_parse.cpp.o -o ../../../bin/test_arg_parse -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target test_arg_parse make -f core/tests/graph_align/CMakeFiles/test_graph_align.dir/build.make core/tests/graph_align/CMakeFiles/test_graph_align.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/graph_align /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_align /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_align/CMakeFiles/test_graph_align.dir/DependInfo.cmake --color= Scanning dependencies of target test_graph_align make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/graph_align/CMakeFiles/test_graph_align.dir/build.make core/tests/graph_align/CMakeFiles/test_graph_align.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object core/tests/graph_align/CMakeFiles/test_graph_align.dir/test_graph_align.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_align && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_graph_align.dir/test_graph_align.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:42, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:47: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_match_refinement.h:37, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:52: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_match_refinement.h:37, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:52: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ [ 89%] Linking CXX executable ../../../bin/test_gff_io cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/gff_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gff_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_gff_io.dir/test_gff_io.cpp.o -o ../../../bin/test_gff_io -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 89%] Built target test_gff_io make -f core/tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make core/tests/graph_msa/CMakeFiles/test_graph_msa.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/graph_msa /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_msa /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_msa/CMakeFiles/test_graph_msa.dir/DependInfo.cmake --color= Scanning dependencies of target test_graph_msa make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/graph_msa/CMakeFiles/test_graph_msa.dir/build.make core/tests/graph_msa/CMakeFiles/test_graph_msa.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 89%] Building CXX object core/tests/graph_msa/CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_msa && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/consensus.h:44, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.h:39, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/consensus/test_consensus.cpp:33: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Linking CXX executable ../../../bin/test_bam_io cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/bam_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bam_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_bam_io.dir/test_bam_io.cpp.o -o ../../../bin/test_bam_io -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 89%] Built target test_bam_io make -f core/tests/graph_types/CMakeFiles/test_graph_types.dir/build.make core/tests/graph_types/CMakeFiles/test_graph_types.dir/depend In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:47: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_impl_align.h:720:10: required from 'void seqan::SEQAN_TEST_Test_Refinement_HeaviestCommonSubsequence() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:66:6: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:47: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/graph_types /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_types /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_types/CMakeFiles/test_graph_types.dir/DependInfo.cmake --color= In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:47: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_impl_align.h:784:10: required from 'void seqan::SEQAN_TEST_Test_Refinement_OutEdgeIteratorAlignment() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:67:6: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:47: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ [ 90%] Linking CXX executable ../../../bin/test_file cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/file && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_file.dir/link.txt --verbose=1 Scanning dependencies of target test_graph_types make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/graph_types/CMakeFiles/test_graph_types.dir/build.make core/tests/graph_types/CMakeFiles/test_graph_types.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_file.dir/test_file.cpp.o -o ../../../bin/test_file -lrt [ 91%] Building CXX object core/tests/graph_types/CMakeFiles/test_graph_types.dir/test_graph_types.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_types && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_graph_types.dir/test_graph_types.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 91%] Built target test_file make -f core/tests/index/CMakeFiles/test_index_qgram.dir/build.make core/tests/index/CMakeFiles/test_index_qgram.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_qgram.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_qgram make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_qgram.dir/build.make core/tests/index/CMakeFiles/test_index_qgram.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 91%] Building CXX object core/tests/index/CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_qgram.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:47: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:43, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:42, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:54, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_qgram.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:49: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:49: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa.h:48, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:49: /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String&, seqan::Graph >&)': /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (unsigned i = 0; i < length(mat); ++i) ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' String<__int64> av; // Average branch length to a combined node ^~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa.h:49, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:49: /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet&, TNames&, seqan::FastaAlign)': /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atEnd(reader)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' TString seq; ^~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TNames&, seqan::FastaAlign)': /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atEnd(reader)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' String mat; ^~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa.h:49, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:49: /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String&, seqan::String&, const TStringSet&, const TNames&, MummerLib)': /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atEnd(reader)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' TName seq1; ^~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph >&, TNames&, NewickFormat)': /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (atEnd(reader)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' TVertexDescriptor lastVertex = nilVertex; ^~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_qgram.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_qgram.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Undirected<>; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::addEdges(seqan::Graph&, const TEdgeArray&, TSize) [with TSpec = seqan::Undirected<>; TEdgeArray = unsigned int [28]; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:759:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/ext/new_allocator.h:33, from /usr/include/aarch64-linux-gnu/c++/8/bits/c++allocator.h:33, from /usr/include/c++/8/bits/allocator.h:46, from /usr/include/c++/8/bits/stl_tree.h:64, from /usr/include/c++/8/set:60, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:37, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: /usr/include/c++/8/new: In function 'void seqan::addEdges(seqan::Graph&, const TEdgeArray&, TSize) [with TSpec = seqan::Undirected<>; TEdgeArray = unsigned int [28]; TSize = long unsigned int]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Undirected<>; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::addEdges(seqan::Graph&, const TEdgeArray&, TSize) [with TSpec = seqan::Undirected<>; TEdgeArray = unsigned int [28]; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:760:23: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/ext/new_allocator.h:33, from /usr/include/aarch64-linux-gnu/c++/8/bits/c++allocator.h:33, from /usr/include/c++/8/bits/allocator.h:46, from /usr/include/c++/8/bits/stl_tree.h:64, from /usr/include/c++/8/set:60, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:37, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: /usr/include/c++/8/new: In function 'void seqan::addEdges(seqan::Graph&, const TEdgeArray&, TSize) [with TSpec = seqan::Undirected<>; TEdgeArray = unsigned int [28]; TSize = long unsigned int]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_qgram.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_qgram.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_qgram.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:120:16: required from 'seqan::String >::String(seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_drawing.h:303:21: required from 'void seqan::_createEdgeAttributes(const seqan::Graph > >&, TEdgeAttributes&) [with TAlphabet = seqan::SimpleType; TCargo = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag; TEdgeAttributes = seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_drawing.h:590:23: required from 'void seqan::write(TFile&, const seqan::Graph&, seqan::DotDrawing) [with TFile = std::__cxx11::basic_stringstream; TSpec = seqan::Automaton, seqan::String, seqan::Alloc<> >, seqan::WordGraph<> >; seqan::DotDrawing = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_utils.h:241:43: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Undirected<>; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::addEdges(seqan::Graph&, const TEdgeArray&, TSize) [with TSpec = seqan::Undirected<>; TEdgeArray = unsigned int [6]; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:759:37, inlined from 'void seqan::Test_ConnectedComponents()' at /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.h:417:10: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/ext/new_allocator.h:33, from /usr/include/aarch64-linux-gnu/c++/8/bits/c++allocator.h:33, from /usr/include/c++/8/bits/allocator.h:46, from /usr/include/c++/8/bits/stl_tree.h:64, from /usr/include/c++/8/set:60, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:37, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: /usr/include/c++/8/new: In function 'void seqan::Test_ConnectedComponents()': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Undirected<>; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::addEdges(seqan::Graph&, const TEdgeArray&, TSize) [with TSpec = seqan::Undirected<>; TEdgeArray = unsigned int [6]; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:760:23, inlined from 'void seqan::Test_ConnectedComponents()' at /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.h:417:10: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/ext/new_allocator.h:33, from /usr/include/aarch64-linux-gnu/c++/8/bits/c++allocator.h:33, from /usr/include/c++/8/bits/allocator.h:46, from /usr/include/c++/8/bits/stl_tree.h:64, from /usr/include/c++/8/set:60, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:37, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: /usr/include/c++/8/new: In function 'void seqan::Test_ConnectedComponents()': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_tcoffee.h:49:17: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_tcoffee.h:446:19: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_qgram.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_qgram_index.h:214:14: required from 'void seqan::SEQAN_TEST_testUngappedQGramIndex() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_qgram.cpp:61:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_qgram.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Undirected<>; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:191:20, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:214:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:110:14, inlined from 'typename seqan::Value::Type seqan::pathGrowingAlgorithm(seqan::Graph&, const TWeightMap&, TEdgeMap&) [with TSpec = seqan::Undirected<>; TWeightMap = seqan::String >; TEdgeMap = seqan::String]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms/graph_algorithm.h:2040:9: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/ext/new_allocator.h:33, from /usr/include/aarch64-linux-gnu/c++/8/bits/c++allocator.h:33, from /usr/include/c++/8/bits/allocator.h:46, from /usr/include/c++/8/bits/stl_tree.h:64, from /usr/include/c++/8/set:60, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_algorithms.h:37, from /build/seqan-1.4.2+dfsg/core/tests/graph_algorithms/test_graph_algorithms.cpp:38: /usr/include/c++/8/new: In function 'typename seqan::Value::Type seqan::pathGrowingAlgorithm(seqan::Graph&, const TWeightMap&, TEdgeMap&) [with TSpec = seqan::Undirected<>; TWeightMap = seqan::String >; TEdgeMap = seqan::String]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 91%] Linking CXX executable ../../../bin/test_graph_algorithms cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_algorithms && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_algorithms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_graph_algorithms.dir/test_graph_algorithms.cpp.o -o ../../../bin/test_graph_algorithms -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 91%] Built target test_graph_algorithms make -f core/tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make core/tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_crosscompare_dna_dfi make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build.make core/tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 91%] Building CXX object core/tests/index/CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna_dfi.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/pipe.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna_dfi.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ [ 91%] Linking CXX executable ../../../bin/test_index_qgram cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_qgram.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_qgram.dir/test_index_qgram.cpp.o -o ../../../bin/test_index_qgram -lrt In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna_dfi.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 91%] Built target test_index_qgram make -f core/tests/index/CMakeFiles/test_index_fm.dir/build.make core/tests/index/CMakeFiles/test_index_fm.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_fm.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_fm make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_fm.dir/build.make core/tests/index/CMakeFiles/test_index_fm.dir/build In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna_dfi.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 91%] Building CXX object core/tests/index/CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna_dfi.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ [ 91%] Linking CXX executable ../../../bin/test_consensus cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_consensus.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_consensus.dir/test_consensus.cpp.o -o ../../../bin/test_consensus -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 91%] Built target test_consensus make -f core/tests/index/CMakeFiles/test_index_repeats.dir/build.make core/tests/index/CMakeFiles/test_index_repeats.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_repeats.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_repeats make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_repeats.dir/build.make core/tests/index/CMakeFiles/test_index_repeats.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 92%] Building CXX object core/tests/index/CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:47: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Directed >; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:191:50, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Graph > >*; TSource1 = seqan::Graph > >*; TSource2 = seqan::Graph > >*]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::False) [with TValueSource = seqan::Graph > >; TValueTarget = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::Graph > >; TValueTarget = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Graph > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/ext/new_allocator.h:33, from /usr/include/aarch64-linux-gnu/c++/8/bits/c++allocator.h:33, from /usr/include/c++/8/bits/allocator.h:46, from /usr/include/c++/8/bits/stl_tree.h:64, from /usr/include/c++/8/map:60, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:42, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:47: /usr/include/c++/8/new: In function 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Graph > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:47: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Directed >; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:192:24, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Graph > >*; TSource1 = seqan::Graph > >*; TSource2 = seqan::Graph > >*]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::False) [with TValueSource = seqan::Graph > >; TValueTarget = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::Graph > >; TValueTarget = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Graph > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/ext/new_allocator.h:33, from /usr/include/aarch64-linux-gnu/c++/8/bits/c++allocator.h:33, from /usr/include/c++/8/bits/allocator.h:46, from /usr/include/c++/8/bits/stl_tree.h:64, from /usr/include/c++/8/map:60, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:42, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:47: /usr/include/c++/8/new: In function 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Graph > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:47: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Undirected<>; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:191:20, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:214:12, inlined from 'const seqan::Graph >& seqan::Graph >::operator=(const seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:118:14, inlined from 'const seqan::Graph >& seqan::Graph >::operator=(const seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:113:16, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align/graph_impl_align.h:376:18: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/ext/new_allocator.h:33, from /usr/include/aarch64-linux-gnu/c++/8/bits/c++allocator.h:33, from /usr/include/c++/8/bits/allocator.h:46, from /usr/include/c++/8/bits/stl_tree.h:64, from /usr/include/c++/8/map:60, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:42, from /build/seqan-1.4.2+dfsg/core/tests/graph_align/test_graph_align.cpp:47: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TStringSet = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TCargo = void; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna_dfi.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::String, seqan::Alloc<> >; TSpec = seqan::Alloc<>; TSize = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_base.h:1435:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TSize = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::StringSet, seqan::Alloc<> > >; TSize = int; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:150:9: required from 'void seqan::crossIndicesDna() [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:182:50: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaDfi() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna_dfi.cpp:53:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna_dfi.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(seqan::Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TVertexDescriptor = unsigned int; TLabel = char]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_addLetterToOracle(seqan::Graph >&, TPropertyMap&, TChar) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TPropertyMap = seqan::String >; TChar = char]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_oracle.h:93:10, inlined from 'void seqan::createOracle(seqan::Graph >&, TText) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TText = const char*]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_oracle.h:151:49, inlined from 'void Test_Oracle()' at /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_derived.h:50:14: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void Test_Oracle()': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/pipe.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:35: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:35: /usr/include/c++/8/new: In function 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.h:52:16: required from 'void SEQAN_TEST_test_index_repeats_period_1_ignore_minlen_for_ns() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.cpp:41:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_repeats.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:37: /usr/include/c++/8/new: In function 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 92%] Linking CXX executable ../../../bin/test_index_crosscompare_dna_dfi cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_dna_dfi.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_crosscompare_dna_dfi.dir/test_index_crosscompare_dna_dfi.cpp.o -o ../../../bin/test_index_crosscompare_dna_dfi -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 92%] Built target test_index_crosscompare_dna_dfi make -f core/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make core/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_crosscompare_dna make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build.make core/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 92%] Building CXX object core/tests/index/CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna.cpp [ 92%] Linking CXX executable ../../../bin/test_index_repeats cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_repeats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_repeats.dir/test_index_repeats.cpp.o -o ../../../bin/test_index_repeats -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 92%] Built target test_index_repeats make -f core/tests/index/CMakeFiles/test_index_creation.dir/build.make core/tests/index/CMakeFiles/test_index_creation.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_creation.dir/DependInfo.cmake --color= In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::Segment, seqan::Alloc<> >, seqan::SuffixSegment>; TPos = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createSetSuffixTrie(seqan::Graph >&, TTerminalStateMap&, const TTexts&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TTexts = seqan::String, seqan::Alloc<> > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:309:20: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:37: /usr/include/c++/8/new: In function 'void seqan::createSetSuffixTrie(seqan::Graph >&, TTerminalStateMap&, const TTexts&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TTexts = seqan::String, seqan::Alloc<> > >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ Scanning dependencies of target test_index_creation make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_creation.dir/build.make core/tests/index/CMakeFiles/test_index_creation.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 92%] Building CXX object core/tests/index/CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp [ 92%] Linking CXX executable ../../../bin/test_graph_align cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_graph_align.dir/test_graph_align.cpp.o -o ../../../bin/test_graph_align -lrt In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/pipe.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 92%] Built target test_graph_align make -f core/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make core/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_crosscompare_char_dfi make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build.make core/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 92%] Building CXX object core/tests/index/CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char_dfi.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:42, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:54, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TAlphabet = char; TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = char; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::String >; TPos = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createTrie(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = char; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::createSetOracle(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = char; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_oracle.h:217:12: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:37: /usr/include/c++/8/new: In function 'void seqan::createSetOracle(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = char; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String > >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::String, seqan::Alloc<> >; TPos = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createTrie(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String, seqan::Alloc<> > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::createSetOracle(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String, seqan::Alloc<> > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_oracle.h:217:12: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:37: /usr/include/c++/8/new: In function 'void seqan::createSetOracle(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = const seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String, seqan::Alloc<> > >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::String, seqan::Alloc<> >; TSpec = seqan::Alloc<>; TSize = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_base.h:1435:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TSize = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::StringSet, seqan::Alloc<> > >; TSize = int; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:150:9: required from 'void seqan::crossIndicesDna() [with TIndexSpec1 = seqan::IndexWotd<>; TIndexSpec2 = seqan::IndexWotd >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:182:50: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareDnaDfi() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna.cpp:53:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_dna.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/pipe.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char_dfi.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TAlphabet = char; TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = char; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::String >; TPos = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createTrie(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = char; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_ahocorasick.h:192:12: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:37: /usr/include/c++/8/new: In function 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String > >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(seqan::Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = char; TCargo = void; TSpec = seqan::Tag; TVertexDescriptor = unsigned int; TLabel = char]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = char; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::String >; TPos = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:101:10, inlined from 'void seqan::createTrie(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = char; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_ahocorasick.h:192:12: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:37: /usr/include/c++/8/new: In function 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String > >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_tree.h:444:43, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Tree; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_tree.h:229:51: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_tree.h:445:20, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Tree; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_tree.h:229:51: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_tree.h:444:43, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Tree; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_tree.h:230:24: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_tree.h:445:20, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Tree; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_tree.h:230:24: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char_dfi.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char_dfi.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char_dfi.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::String, seqan::Alloc<> >; TPos = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createTrie(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String, seqan::Alloc<> > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String, seqan::Alloc<> > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_ahocorasick.h:192:12: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:37: /usr/include/c++/8/new: In function 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String, seqan::Alloc<> > >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(seqan::Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TVertexDescriptor = unsigned int; TLabel = seqan::SimpleType]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::String, seqan::Alloc<> >; TPos = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:101:10, inlined from 'void seqan::createTrie(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String, seqan::Alloc<> > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String, seqan::Alloc<> > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_ahocorasick.h:192:12: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:37: /usr/include/c++/8/new: In function 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String, seqan::Alloc<> > >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = seqan::Pair; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Directed >; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = seqan::Pair; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:191:50: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = seqan::Pair; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = seqan::Pair; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Directed >; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = seqan::Pair; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:192:24: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = seqan::Pair; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:46: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Directed >; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:191:50, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Graph > >*; TSource1 = seqan::Graph > >*; TSource2 = seqan::Graph > >*]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::False) [with TValueSource = seqan::Graph > >; TValueTarget = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::Graph > >; TValueTarget = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Graph > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Graph > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Graph > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:41: /usr/include/c++/8/new: In static member function 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:46: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Directed >; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:192:24, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = seqan::Graph > >*; TSource1 = seqan::Graph > >*; TSource2 = seqan::Graph > >*]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::False) [with TValueSource = seqan::Graph > >; TValueTarget = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::Graph > >; TValueTarget = seqan::Graph > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Graph > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Graph > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Graph > >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:41: /usr/include/c++/8/new: In static member function 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:46: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Undirected; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:191:20, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:214:12, inlined from 'const seqan::Graph >& seqan::Graph >::operator=(const seqan::Graph >&) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:118:14: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:41: /usr/include/c++/8/new: In function 'const seqan::Graph >& seqan::Graph >::operator=(const seqan::Graph >&) [with TCargo = double; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.h:65:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:58:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.h:65:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:58:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const seqan::StringSet&, TAlgSpec) [with TSA = seqan::String >, seqan::Alloc<> >; TString = seqan::String >; TSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet&, const TAlgSpec&, seqan::True) [with TSA = seqan::String >, seqan::Alloc<> >; TSequence = seqan::String >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String >, seqan::Alloc<> >; TText = seqan::StringSet > >; TAlgSpec = seqan::Skew7]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(seqan::Index&, FibreSA, TSpecAlg) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.h:65:16: required from 'void seqan::SEQAN_TEST_testIssue519() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:58:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:46: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Undirected; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:191:20, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:214:12, inlined from 'const seqan::Graph >& seqan::Graph >::operator=(const seqan::Graph >&) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:118:14, inlined from 'const seqan::Graph >& seqan::Graph >::operator=(const seqan::Graph >&) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:113:16, inlined from 'void Test_UpgmaGuideTree(int) [with TTag = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa_guide_tree.h:129:31: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_msa/test_graph_msa.cpp:41: /usr/include/c++/8/new: In function 'void Test_UpgmaGuideTree(int) [with TTag = const seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Directed<>; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:191:50: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Directed<>; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:192:24: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 92%] Linking CXX executable ../../../bin/test_index_crosscompare_dna cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_dna.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_crosscompare_dna.dir/test_index_crosscompare_dna.cpp.o -o ../../../bin/test_index_crosscompare_dna -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 92%] Built target test_index_crosscompare_dna make -f core/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make core/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_fm_rank_dictionary make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build.make core/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 92%] Building CXX object core/tests/index/CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_rank_dictionary.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:98, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:144:9: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:147:9: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:151:9: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:154:9: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:158:9: note: here case 1: ^~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:98, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_creation.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:397:4: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:400:4: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:404:4: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:407:4: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:411:4: note: here case 1: ^~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:35: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::ScoreAndID; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::ScoreAndID; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::ScoreAndID; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/align/test_align.cpp:35: /usr/include/c++/8/new: In function 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::ScoreAndID; TLess = std::less >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_stree.h:325:15: required from 'void SEQAN_TEST_fm_index_iterator_constuctor() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:140:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_prefix_sum_table.h:76:11: required from 'void prefixSumTableGetAlphabetSize(TPrefixSumTable&) [with TPrefixSumTable = seqan::PrefixSumTable, void>]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_prefix_sum_table.h:357:34: required from 'void SEQAN_TEST_prefix_sum_table_get_alphabet_size() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:69:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_rank_dictionary.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:344:11: required from 'void fmIndexFindFirstIndex_(seqan::Index >) [with TText = seqan::String, seqan::Alloc<> >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:575:27: required from 'void SEQAN_TEST_test_fm_index_find_first_index_() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:135:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ [ 93%] Linking CXX executable ../../../bin/test_index_crosscompare_char_dfi cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_char_dfi.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_crosscompare_char_dfi.dir/test_index_crosscompare_char_dfi.cpp.o -o ../../../bin/test_index_crosscompare_char_dfi -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 93%] Built target test_index_crosscompare_char_dfi make -f core/tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make core/tests/index/CMakeFiles/test_index_crosscompare_char.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_crosscompare_char.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_crosscompare_char make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_crosscompare_char.dir/build.make core/tests/index/CMakeFiles/test_index_crosscompare_char.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object core/tests/index/CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_rank_dictionary.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_rank_dictionary.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_rank_dictionary.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Undirected; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:191:20: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(seqan::Graph >&, TVertexDescriptor, TVertexDescriptor) [with TCargo = void; TSpec = seqan::Tag; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:441:19, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:194:32: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = void; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = seqan::Pair; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Undirected >; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = seqan::Pair; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:191:20: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = seqan::Pair; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(seqan::Graph >&, TVertexDescriptor, TVertexDescriptor) [with TCargo = seqan::Pair; TSpec = seqan::Tag; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:441:19, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = seqan::Pair; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_undirected.h:194:32: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = seqan::Pair; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/pipe.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_rank_dictionary.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_sentinel_rank_dictionary.h:235:48: required from 'void sentinelRankDictionaryGetFibre(TRankDictionary&) [with TRankDictionary = seqan::SentinelRankDictionary > >, const seqan::Tag >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_sentinel_rank_dictionary.h:254:39: required from 'void SentinelRankDictionaryTestCommon__GetFibre::runTest() [with SEQAN_TParam = seqan::TagList > >, const seqan::Tag > >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_sentinel_rank_dictionary.h:247:1: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_rank_dictionary.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_rank_dictionary.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_sentinel_rank_dictionary.h:235:48: required from 'void sentinelRankDictionaryGetFibre(TRankDictionary&) [with TRankDictionary = seqan::SentinelRankDictionary > >, const seqan::Tag >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_sentinel_rank_dictionary.h:254:39: required from 'void SentinelRankDictionaryTestCommon__GetFibre::runTest() [with SEQAN_TParam = seqan::TagList > >, const seqan::Tag > >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_sentinel_rank_dictionary.h:247:1: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_rank_dictionary.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_rank_dictionary.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_sentinel_rank_dictionary.h:235:48: required from 'void sentinelRankDictionaryGetFibre(TRankDictionary&) [with TRankDictionary = seqan::SentinelRankDictionary > >, const seqan::Tag >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_sentinel_rank_dictionary.h:254:39: required from 'void SentinelRankDictionaryTestCommon__GetFibre::runTest() [with SEQAN_TParam = seqan::TagList > >, const seqan::Tag > >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_sentinel_rank_dictionary.h:247:1: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm_rank_dictionary.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:689:19: required from 'bool seqan::_indexCreate(seqan::Index >&, TText&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:707:24: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSaLfTable) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void; seqan::FibreSaLfTable = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TFibre = seqan::FibreSaLfTable_]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:424:14: required from 'void fmIndexSearch(seqan::Index >) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:621:22: required from 'void SEQAN_TEST_test_fm_index_search() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:137:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:689:19: required from 'bool seqan::_indexCreate(seqan::Index >&, TText&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:707:24: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSaLfTable) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void; seqan::FibreSaLfTable = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TFibre = seqan::FibreSaLfTable_]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:424:14: required from 'void fmIndexSearch(seqan::Index >) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:621:22: required from 'void SEQAN_TEST_test_fm_index_search() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:137:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:689:19: required from 'bool seqan::_indexCreate(seqan::Index >&, TText&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:707:24: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSaLfTable) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void; seqan::FibreSaLfTable = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TFibre = seqan::FibreSaLfTable_]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:424:14: required from 'void fmIndexSearch(seqan::Index >) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:621:22: required from 'void SEQAN_TEST_test_fm_index_search() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:137:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:689:19: required from 'bool seqan::_indexCreate(seqan::Index >&, TText&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:707:24: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSaLfTable) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void; seqan::FibreSaLfTable = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TFibre = seqan::FibreSaLfTable_]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:424:14: required from 'void fmIndexSearch(seqan::Index >) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:622:22: required from 'void SEQAN_TEST_test_fm_index_search() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:137:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:689:19: required from 'bool seqan::_indexCreate(seqan::Index >&, TText&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:707:24: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSaLfTable) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void; seqan::FibreSaLfTable = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TFibre = seqan::FibreSaLfTable_]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:424:14: required from 'void fmIndexSearch(seqan::Index >) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:622:22: required from 'void SEQAN_TEST_test_fm_index_search() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:137:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:689:19: required from 'bool seqan::_indexCreate(seqan::Index >&, TText&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:707:24: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSaLfTable) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void; seqan::FibreSaLfTable = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TFibre = seqan::FibreSaLfTable_]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:424:14: required from 'void fmIndexSearch(seqan::Index >) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:622:22: required from 'void SEQAN_TEST_test_fm_index_search() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:137:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:689:19: required from 'bool seqan::_indexCreate(seqan::Index >&, TText&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:707:24: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSaLfTable) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void; seqan::FibreSaLfTable = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TFibre = seqan::FibreSaLfTable_]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:424:14: required from 'void fmIndexSearch(seqan::Index >) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:623:22: required from 'void SEQAN_TEST_test_fm_index_search() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:137:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::Tag >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:689:19: required from 'bool seqan::_indexCreate(seqan::Index >&, TText&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:707:24: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSaLfTable) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void; seqan::FibreSaLfTable = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TFibre = seqan::FibreSaLfTable_]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:424:14: required from 'void fmIndexSearch(seqan::Index >) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:623:22: required from 'void SEQAN_TEST_test_fm_index_search() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:137:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::Tag >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:689:19: required from 'bool seqan::_indexCreate(seqan::Index >&, TText&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:707:24: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSaLfTable) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TSpec = void; seqan::FibreSaLfTable = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::FMIndex<>; TFibre = seqan::FibreSaLfTable_]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:424:14: required from 'void fmIndexSearch(seqan::Index >) [with TText = seqan::StringSet, seqan::Alloc<> > >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:623:22: required from 'void SEQAN_TEST_test_fm_index_search() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:137:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:689:19: required from 'bool seqan::_indexCreate(seqan::Index >&, TText&) [with TText = seqan::StringSet >; TIndexSpec = seqan::WT<>; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:707:24: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSaLfTable) [with TText = seqan::StringSet >; TIndexSpec = seqan::WT<>; TSpec = void; seqan::FibreSaLfTable = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >; TSpec = seqan::FMIndex<>; TFibre = seqan::FibreSaLfTable_]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:424:14: required from 'void fmIndexSearch(seqan::Index >) [with TText = seqan::StringSet >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:624:22: required from 'void SEQAN_TEST_test_fm_index_search() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:137:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:689:19: required from 'bool seqan::_indexCreate(seqan::Index >&, TText&) [with TText = seqan::StringSet >; TIndexSpec = seqan::WT<>; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:707:24: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSaLfTable) [with TText = seqan::StringSet >; TIndexSpec = seqan::WT<>; TSpec = void; seqan::FibreSaLfTable = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >; TSpec = seqan::FMIndex<>; TFibre = seqan::FibreSaLfTable_]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:424:14: required from 'void fmIndexSearch(seqan::Index >) [with TText = seqan::StringSet >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:624:22: required from 'void SEQAN_TEST_test_fm_index_search() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:137:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::External >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:689:19: required from 'bool seqan::_indexCreate(seqan::Index >&, TText&) [with TText = seqan::StringSet >; TIndexSpec = seqan::WT<>; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_fm.h:707:24: required from 'bool seqan::indexCreate(seqan::Index >&, FibreSaLfTable) [with TText = seqan::StringSet >; TIndexSpec = seqan::WT<>; TSpec = void; seqan::FibreSaLfTable = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet >; TSpec = seqan::FMIndex<>; TFibre = seqan::FibreSaLfTable_]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:424:14: required from 'void fmIndexSearch(seqan::Index >) [with TText = seqan::StringSet >; TIndexSpec = seqan::WT<>; TOptimization = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:624:22: required from 'void SEQAN_TEST_test_fm_index_search() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:137:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TAlphabet = char; TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = char; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::Segment >, seqan::InfixSegment>; TPos = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createTrie(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = char; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_ahocorasick.h:192:12: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:37: /usr/include/c++/8/new: In function 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(seqan::Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = char; TCargo = void; TSpec = seqan::Tag; TVertexDescriptor = unsigned int; TLabel = char]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = char; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::Segment >, seqan::InfixSegment>; TPos = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:101:10, inlined from 'void seqan::createTrie(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = char; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_ahocorasick.h:192:12: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:37: /usr/include/c++/8/new: In function 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Directed >; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:191:50: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = double; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types.h:41, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(seqan::Graph&, TVertexDescriptor) [with TSpec = seqan::Directed >; TVertexDescriptor = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = double; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:192:24: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/graph_types/test_graph_types.cpp:34: /usr/include/c++/8/new: In function 'void seqan::_copyGraph(const seqan::Graph >&, seqan::Graph >&, bool) [with TCargo = double; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TPos = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createTrie(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_ahocorasick.h:192:12: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:37: /usr/include/c++/8/new: In function 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(seqan::Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TVertexDescriptor = unsigned int; TLabel = seqan::SimpleType]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_addStringToTrie(seqan::Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeyword = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TPos = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:101:10, inlined from 'void seqan::createTrie(seqan::Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = seqan::SimpleType; TCargo = void; TSpec = seqan::Tag; TTerminalStateMap = seqan::String >, seqan::Alloc<> >; TKeywords = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/find/find_ahocorasick.h:192:12: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/find/test_find.cpp:37: /usr/include/c++/8/new: In function 'void seqan::_createAcTrie(seqan::Pattern >&) [with TNeedle = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 93%] Linking CXX executable ../../../bin/test_graph_msa cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_msa && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_msa.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_graph_msa.dir/test_graph_msa.cpp.o -o ../../../bin/test_graph_msa -lrt In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:65:46: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index > >, seqan::IndexWotd<> >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:87:63: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>; TText = seqan::StringSet > >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:111:39: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:163:44: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:49:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:65:46: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index > >, seqan::IndexWotd<> >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:87:63: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>; TText = seqan::StringSet > >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:111:39: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:163:44: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:49:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::IndexEsa<> >; TSpec = seqan::PreorderEmptyEdges]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:65:46: required from 'void seqan::crossBottomUp(TIndex1&, TIndex2&) [with TIterSpec = seqan::TopDown >; TIndex1 = seqan::Index > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index > >, seqan::IndexWotd<> >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:87:63: required from 'void seqan::crossIndex(TText&) [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>; TText = seqan::StringSet > >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:111:39: required from 'void seqan::crossIndicesChar() [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>]' /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:163:44: required from 'void seqan::SEQAN_TEST_testIndexCrossCompareChar() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:49:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 93%] Built target test_graph_msa make -f core/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make core/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/DependInfo.cmake --color= In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:98, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:144:9: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:147:9: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:151:9: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:154:9: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:158:9: note: here case 1: ^~~~ Scanning dependencies of target test_index_sa_bwtwalk make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build.make core/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object core/tests/index/CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_sa_bwtwalk.cpp /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:144:9: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:147:9: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:151:9: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:154:9: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:158:9: note: here case 1: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:144:9: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:147:9: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:151:9: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:154:9: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:158:9: note: here case 1: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:144:9: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:147:9: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:151:9: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:154:9: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:158:9: note: here case 1: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:144:9: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:147:9: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:151:9: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:154:9: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:158:9: note: here case 1: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:144:9: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:147:9: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:151:9: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:154:9: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:158:9: note: here case 1: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:144:9: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:147:9: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:151:9: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:154:9: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:158:9: note: here case 1: ^~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:98, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:397:4: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:400:4: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:404:4: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:407:4: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:411:4: note: here case 1: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:397:4: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:400:4: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:404:4: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:407:4: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:411:4: note: here case 1: ^~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:98, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:144:9: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:147:9: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:151:9: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:154:9: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:158:9: note: here case 1: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:397:4: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:400:4: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:404:4: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:407:4: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:411:4: note: here case 1: ^~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:98, from /build/seqan-1.4.2+dfsg/core/tests/index/test_crosscompare.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:397:4: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:400:4: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:404:4: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:407:4: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:411:4: note: here case 1: ^~~~ [ 93%] Linking CXX executable ../../../bin/test_graph_types cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/graph_types && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_graph_types.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_graph_types.dir/test_graph_types.cpp.o -o ../../../bin/test_graph_types -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 93%] Built target test_graph_types make -f core/tests/index/CMakeFiles/test_index_shapes.dir/build.make core/tests/index/CMakeFiles/test_index_shapes.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_shapes.dir/DependInfo.cmake --color= In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:42, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:54, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_sa_bwtwalk.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ Scanning dependencies of target test_index_shapes make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_shapes.dir/build.make core/tests/index/CMakeFiles/test_index_shapes.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object core/tests/index/CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_shapes.cpp /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:397:4: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:400:4: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:404:4: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:407:4: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:411:4: note: here case 1: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:397:4: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:400:4: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:404:4: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:407:4: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:411:4: note: here case 1: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:397:4: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:400:4: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:404:4: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:407:4: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:411:4: note: here case 1: ^~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_sa_bwtwalk.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_sa_bwtwalk.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_sa_bwtwalk.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_sa_bwtwalk.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_sa_bwtwalk.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:42, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:54, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_shapes.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_shapes.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_shapes.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_shapes.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_shapes.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_shapes.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ [ 93%] Linking CXX executable ../../../bin/test_find cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/find && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_find.dir/test_find.cpp.o -o ../../../bin/test_find -lrt In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_shapes.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_shapes.h:49:12: required from 'void seqan::testShape(TShape1, TShape2, bool) [with TShape1 = seqan::Shape, seqan::UngappedShape<0> >; TShape2 = seqan::Shape, seqan::UngappedShape<6> >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_shapes.h:123:11: required from 'void seqan::SEQAN_TEST_testShapes() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_shapes.cpp:58:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_shapes.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 93%] Built target test_find make -f core/tests/index/CMakeFiles/test_index_drawing.dir/build.make core/tests/index/CMakeFiles/test_index_drawing.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_drawing.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_drawing make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_drawing.dir/build.make core/tests/index/CMakeFiles/test_index_drawing.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object core/tests/index/CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_drawing.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:39: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_crosscompare_char.cpp:39: /usr/include/c++/8/new: In function 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/pipe.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_drawing.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_drawing.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_drawing.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_drawing.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ [ 93%] Linking CXX executable ../../../bin/test_index_sa_bwtwalk cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_sa_bwtwalk.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_sa_bwtwalk.dir/test_index_sa_bwtwalk.cpp.o -o ../../../bin/test_index_sa_bwtwalk -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 93%] Built target test_index_sa_bwtwalk make -f core/tests/index/CMakeFiles/test_index_stree_iterators.dir/build.make core/tests/index/CMakeFiles/test_index_stree_iterators.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_stree_iterators.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_stree_iterators make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_stree_iterators.dir/build.make core/tests/index/CMakeFiles/test_index_stree_iterators.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 94%] Building CXX object core/tests/index/CMakeFiles/test_index_stree_iterators.dir/test_index_stree_iterators.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_stree_iterators.dir/test_index_stree_iterators.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp [ 94%] Linking CXX executable ../../../bin/test_index_shapes cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_shapes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_shapes.dir/test_index_shapes.cpp.o -o ../../../bin/test_index_shapes -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 94%] Built target test_index_shapes make -f core/tests/index/CMakeFiles/test_index_swift.dir/build.make core/tests/index/CMakeFiles/test_index_swift.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index/CMakeFiles/test_index_swift.dir/DependInfo.cmake --color= Scanning dependencies of target test_index_swift make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/index/CMakeFiles/test_index_swift.dir/build.make core/tests/index/CMakeFiles/test_index_swift.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 94%] Building CXX object core/tests/index/CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/index/test_index_swift.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_drawing.cpp:36: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_drawing.cpp:33: /usr/include/c++/8/new: In function 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:42, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:54, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/pipe.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:40, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_swift.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_swift.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ [ 94%] Linking CXX executable ../../../bin/test_index_creation cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_creation.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_creation.dir/test_index_creation.cpp.o -o ../../../bin/test_index_creation -lrt In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_swift.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_swift.cpp:2: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 94%] Built target test_index_creation make -f core/tests/map/CMakeFiles/test_map.dir/build.make core/tests/map/CMakeFiles/test_map.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/map /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/map /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/map/CMakeFiles/test_map.dir/DependInfo.cmake --color= Scanning dependencies of target test_map make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/map/CMakeFiles/test_map.dir/build.make core/tests/map/CMakeFiles/test_map.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 94%] Building CXX object core/tests/map/CMakeFiles/test_map.dir/test_map.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/map && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_map.dir/test_map.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/map/test_map.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_swift.cpp:1: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_swift.cpp:20:16: required from 'void SEQAN_TEST_test_index_swift_find_empty_pattern() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_swift.cpp:34:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_swift.cpp:1: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ [ 95%] Linking CXX executable ../../../bin/test_index_drawing cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_drawing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_drawing.dir/test_index_drawing.cpp.o -o ../../../bin/test_index_drawing -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target test_index_drawing make -f core/tests/misc/CMakeFiles/test_misc.dir/build.make core/tests/misc/CMakeFiles/test_misc.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/misc /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/misc /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/misc/CMakeFiles/test_misc.dir/DependInfo.cmake --color= Scanning dependencies of target test_misc make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/misc/CMakeFiles/test_misc.dir/build.make core/tests/misc/CMakeFiles/test_misc.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 95%] Building CXX object core/tests/misc/CMakeFiles/test_misc.dir/test_misc.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/misc && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_misc.dir/test_misc.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:42, from /build/seqan-1.4.2+dfsg/core/include/seqan/find.h:45, from /build/seqan-1.4.2+dfsg/core/tests/map/test_map_map.h:44, from /build/seqan-1.4.2+dfsg/core/tests/map/test_map.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/misc/cmdparser/cmdparser.h:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/misc/misc_cmdparser.h:36, from /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp:47: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc_edit_environment.h:48:15: required from 'void SEQAN_TEST_test_misc_edit_environment_string_enumerator_hamming() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp:130:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2276:16: required from 'void seqan::erase(T&, TPosition) [with T = seqan::String, seqan::Alloc<> >; TPosition = int]' /build/seqan-1.4.2+dfsg/core/include/seqan/misc/edit_environment.h:379:22: required from 'bool seqan::Iter, DISTANCE> >, const seqan::Tag >::_reinit(int, int) [with TObject = seqan::String, seqan::Alloc<> >; unsigned int DISTANCE = 1]' /build/seqan-1.4.2+dfsg/core/include/seqan/misc/edit_environment.h:959:9: required from 'void seqan::goBegin(seqan::Iter, DISTANCE> >, const seqan::Tag >&) [with TObject = seqan::String, seqan::Alloc<> >; unsigned int DISTANCE = 1]' /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc_edit_environment.h:126:12: required from 'void SEQAN_TEST_test_misc_edit_environment_string_enumerator_iterator_edit() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp:133:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String, seqan::Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2276:16: required from 'void seqan::erase(T&, TPosition) [with T = seqan::String, seqan::Alloc<> >; TPosition = int]' /build/seqan-1.4.2+dfsg/core/include/seqan/misc/edit_environment.h:379:22: required from 'bool seqan::Iter, DISTANCE> >, const seqan::Tag >::_reinit(int, int) [with TObject = seqan::String, seqan::Alloc<> >; unsigned int DISTANCE = 1]' /build/seqan-1.4.2+dfsg/core/include/seqan/misc/edit_environment.h:959:9: required from 'void seqan::goBegin(seqan::Iter, DISTANCE> >, const seqan::Tag >&) [with TObject = seqan::String, seqan::Alloc<> >; unsigned int DISTANCE = 1]' /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc_edit_environment.h:126:12: required from 'void SEQAN_TEST_test_misc_edit_environment_string_enumerator_iterator_edit() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp:133:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp:41: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ [ 95%] Linking CXX executable ../../../bin/test_index_swift cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_swift.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_swift.dir/test_index_swift.cpp.o -o ../../../bin/test_index_swift -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target test_index_swift make -f core/tests/misc/CMakeFiles/test_misc_cmdparser.dir/build.make core/tests/misc/CMakeFiles/test_misc_cmdparser.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/misc /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/misc /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/misc/CMakeFiles/test_misc_cmdparser.dir/DependInfo.cmake --color= Scanning dependencies of target test_misc_cmdparser make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/misc/CMakeFiles/test_misc_cmdparser.dir/build.make core/tests/misc/CMakeFiles/test_misc_cmdparser.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 95%] Building CXX object core/tests/misc/CMakeFiles/test_misc_cmdparser.dir/test_misc_cmdparser.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/misc && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_misc_cmdparser.dir/test_misc_cmdparser.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc_cmdparser.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1475:37: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::String, seqan::Alloc<> >; TTargetSpec = seqan::Alloc<>; TValue = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(seqan::StringSet >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Alloc<> >; TString2 = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> > >; TValue = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:65:16: required from 'void seqan::SEQAN_TEST_testIssue509() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:59:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/misc/cmdparser/cmdparser.h:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/misc/misc_cmdparser.h:36, from /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc_cmdparser.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp:41: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/misc/test_misc.cpp:33: /usr/include/c++/8/new: In function 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:571:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Preorder]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:68:40: required from 'void seqan::SEQAN_TEST_testIssue509() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:59:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:571:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Preorder]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:68:40: required from 'void seqan::SEQAN_TEST_testIssue509() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:59:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:571:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > > >; TSpec = seqan::Preorder]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:68:40: required from 'void seqan::SEQAN_TEST_testIssue509() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:59:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:571:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:705:41: required from 'void seqan::SEQAN_TEST_testMultipleStrings_Ticket1109() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:71:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:571:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:705:41: required from 'void seqan::SEQAN_TEST_testMultipleStrings_Ticket1109() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:71:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(seqan::Index&, seqan::Tag) [with TText = seqan::StringSet > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_base.h:571:15: required from 'void seqan::_indexRequireTopDownIteration(seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > > >; TSpec = seqan::Preorder]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:705:41: required from 'void seqan::SEQAN_TEST_testMultipleStrings_Ticket1109() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:71:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:293:61: required from 'void seqan::compareTreeIterators(TIndex1&, TIndex2&) [with TIndex1 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index, seqan::Alloc<> > >, seqan::IndexWotd<> >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:349:23: required from 'void seqan::compareIndices() [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:355:42: required from 'void seqan::SEQAN_TEST_testCompareIndices_Esa_Wotd() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:65:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:293:61: required from 'void seqan::compareTreeIterators(TIndex1&, TIndex2&) [with TIndex1 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index, seqan::Alloc<> > >, seqan::IndexWotd<> >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:349:23: required from 'void seqan::compareIndices() [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:355:42: required from 'void seqan::SEQAN_TEST_testCompareIndices_Esa_Wotd() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:65:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ [ 95%] Linking CXX executable ../../../bin/test_map In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:99, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; seqan::Pipe, seqan::Merger7Multi >::TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >; typename seqan::Value::Type = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(seqan::String&, seqan::Pipe&) [with TValue = seqan::Pair >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TSpec = seqan::Multi >, seqan::String > >]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_shims.h:110:15: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TSpec = seqan::Preorder]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:293:61: required from 'void seqan::compareTreeIterators(TIndex1&, TIndex2&) [with TIndex1 = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >; TIndex2 = seqan::Index, seqan::Alloc<> > >, seqan::IndexWotd<> >]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:349:23: required from 'void seqan::compareIndices() [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:355:42: required from 'void seqan::SEQAN_TEST_testCompareIndices_Esa_Wotd() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:65:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] memcpy(&dst.i.i1, &src.i1, sizeof(T1)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_aggregate.h:55, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:71, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here struct Pair ^~~~~~~~~~~~~~~~~~ cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/map && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_map.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_map.dir/test_map.cpp.o -o ../../../bin/test_map -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target test_map make -f core/tests/modifier/CMakeFiles/test_modifier.dir/build.make core/tests/modifier/CMakeFiles/test_modifier.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/modifier /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/modifier /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/modifier/CMakeFiles/test_modifier.dir/DependInfo.cmake --color= In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::String, seqan::Alloc<> >; TSpec = seqan::Alloc<>; TSize = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_base.h:1435:18: required from 'typename seqan::Size >::Type seqan::resize(seqan::StringSet&, TSize, seqan::Tag) [with TString = seqan::String, seqan::Alloc<> >; TSpec = seqan::Owner<>; TSize = int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::StringSet, seqan::Alloc<> > >; TSize = int; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:340:9: required from 'void seqan::compareIndices() [with TIndexSpec1 = seqan::IndexEsa<>; TIndexSpec2 = seqan::IndexWotd<>]' /build/seqan-1.4.2+dfsg/core/tests/index/test_stree_iterators.h:355:42: required from 'void seqan::SEQAN_TEST_testCompareIndices_Esa_Wotd() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:65:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ Scanning dependencies of target test_modifier make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/modifier/CMakeFiles/test_modifier.dir/build.make core/tests/modifier/CMakeFiles/test_modifier.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 95%] Building CXX object core/tests/modifier/CMakeFiles/test_modifier.dir/test_modifier.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/modifier && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_modifier.dir/test_modifier.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:98, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:144:9: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:147:9: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:151:9: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:154:9: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:158:9: note: here case 1: ^~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:98, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:397:4: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:400:4: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:404:4: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:407:4: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:411:4: note: here case 1: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:397:4: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:400:4: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:404:4: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:407:4: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:411:4: note: here case 1: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:397:4: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:400:4: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:404:4: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:407:4: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:411:4: note: here case 1: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe >, seqan::Source<> >, seqan::Caster >; TLimitsString = seqan::String >; TNameInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TOut0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TOut3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TOut6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TOut124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:397:4: note: here case 5: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:400:4: note: here case 4: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:404:4: note: here case 3: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=] /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:407:4: note: here case 2: ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=] cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; ^~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/pump_extender7.h:411:4: note: here case 1: ^~~~ [ 95%] Linking CXX executable ../../../bin/test_index_crosscompare_char cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_crosscompare_char.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_crosscompare_char.dir/test_index_crosscompare_char.cpp.o -o ../../../bin/test_index_crosscompare_char -lrt In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:47, from /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier_shortcuts.h:45:22: required from 'void SEQAN_TEST_test_modifer_shortcuts_dna_string_reverse() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:47:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:47, from /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:47, from /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier_shortcuts.h:55:23: required from 'void SEQAN_TEST_test_modifer_shortcuts_dna5_string_reverse() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:48:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:47, from /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:47, from /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier_shortcuts.h:65:22: required from 'void SEQAN_TEST_test_modifer_shortcuts_rna_string_reverse() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:49:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:47, from /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:47, from /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier_shortcuts.h:75:23: required from 'void SEQAN_TEST_test_modifer_shortcuts_rna5_string_reverse() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:50:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:47, from /build/seqan-1.4.2+dfsg/core/tests/modifier/test_modifier.cpp:33: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target test_index_crosscompare_char make -f core/tests/parallel/CMakeFiles/test_parallel.dir/build.make core/tests/parallel/CMakeFiles/test_parallel.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/parallel /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/parallel /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/parallel/CMakeFiles/test_parallel.dir/DependInfo.cmake --color= Scanning dependencies of target test_parallel make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/parallel/CMakeFiles/test_parallel.dir/build.make core/tests/parallel/CMakeFiles/test_parallel.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 95%] Building CXX object core/tests/parallel/CMakeFiles/test_parallel.dir/test_parallel.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/parallel && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -o CMakeFiles/test_parallel.dir/test_parallel.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/parallel/test_parallel.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/parallel/test_parallel.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ [ 96%] Linking CXX executable ../../../bin/test_misc cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/misc && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_misc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_misc.dir/test_misc.cpp.o -o ../../../bin/test_misc -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target test_misc make -f core/tests/pipe/CMakeFiles/test_pipe.dir/build.make core/tests/pipe/CMakeFiles/test_pipe.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/pipe /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/pipe /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/pipe/CMakeFiles/test_pipe.dir/DependInfo.cmake --color= Scanning dependencies of target test_pipe make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/pipe/CMakeFiles/test_pipe.dir/build.make core/tests/pipe/CMakeFiles/test_pipe.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object core/tests/pipe/CMakeFiles/test_pipe.dir/test_pipe.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/pipe && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_pipe.dir/test_pipe.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp [ 97%] Linking CXX executable ../../../bin/test_misc_cmdparser cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/misc && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_misc_cmdparser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_misc_cmdparser.dir/test_misc_cmdparser.cpp.o -o ../../../bin/test_misc_cmdparser -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target test_misc_cmdparser make -f core/tests/random/CMakeFiles/test_random.dir/build.make core/tests/random/CMakeFiles/test_random.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/random /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/random /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/random/CMakeFiles/test_random.dir/DependInfo.cmake --color= Scanning dependencies of target test_random make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/random/CMakeFiles/test_random.dir/build.make core/tests/random/CMakeFiles/test_random.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object core/tests/random/CMakeFiles/test_random.dir/test_random.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/random && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_random.dir/test_random.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/random/test_random.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/random/test_random.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp:43: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:47, from /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp:346:17: required from 'void testPipeSampler() [with TPack = seqan::BitPacked<>]' /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp:482:34: required from 'void SEQAN_TEST_test_pipe_sampler() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp:492:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:47, from /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ [ 97%] Linking CXX executable ../../../bin/test_parallel cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/parallel && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_parallel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_parallel.dir/test_parallel.cpp.o -o ../../../bin/test_parallel -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target test_parallel make -f core/tests/score/CMakeFiles/test_score.dir/build.make core/tests/score/CMakeFiles/test_score.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/score /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/score /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/score/CMakeFiles/test_score.dir/DependInfo.cmake --color= Scanning dependencies of target test_score make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/score/CMakeFiles/test_score.dir/build.make core/tests/score/CMakeFiles/test_score.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object core/tests/score/CMakeFiles/test_score.dir/test_score.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/score && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_score.dir/test_score.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:42, from /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:50: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ [ 97%] Linking CXX executable ../../../bin/test_random cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/random && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_random.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_random.dir/test_random.cpp.o -o ../../../bin/test_random -lrt [ 97%] Linking CXX executable ../../../bin/test_modifier cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/modifier && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_modifier.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_modifier.dir/test_modifier.cpp.o -o ../../../bin/test_modifier -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target test_random make -f core/tests/seeds/CMakeFiles/test_seeds.dir/build.make core/tests/seeds/CMakeFiles/test_seeds.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/seeds /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/seeds /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/seeds/CMakeFiles/test_seeds.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target test_modifier Scanning dependencies of target test_seeds make -f core/tests/seq_io/CMakeFiles/test_seq_io.dir/build.make core/tests/seq_io/CMakeFiles/test_seq_io.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/seq_io /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/seq_io /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/seq_io/CMakeFiles/test_seq_io.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/seeds/CMakeFiles/test_seeds.dir/build.make core/tests/seeds/CMakeFiles/test_seeds.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 98%] Building CXX object core/tests/seeds/CMakeFiles/test_seeds.dir/test_seeds.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/seeds && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_seeds.dir/test_seeds.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp Scanning dependencies of target test_seq_io make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/seq_io/CMakeFiles/test_seq_io.dir/build.make core/tests/seq_io/CMakeFiles/test_seq_io.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 98%] Building CXX object core/tests/seq_io/CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/seq_io && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:52: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:52: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:48: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:676:15: required from 'void testScoreSequenceEntryForScore() [with TScoreSpec = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:696:43: required from 'void SEQAN_TEST_test_score_sequence_entry_for_score() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:710:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:48: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:48: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:677:16: required from 'void testScoreSequenceEntryForScore() [with TScoreSpec = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:696:43: required from 'void SEQAN_TEST_test_score_sequence_entry_for_score() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:710:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:48: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:48: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TValue = char; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = char]' /build/seqan-1.4.2+dfsg/core/include/seqan/score/score_matrix_io.h:210:20: required from 'int seqan::read(seqan::RecordReader >&, seqan::Score >&, const ScoreMatrixFile&) [with TStream = std::basic_fstream; TValue = int; TSequenceValue = seqan::SimpleType; TSpec = seqan::Tag; seqan::ScoreMatrixFile = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/score/score_matrix_io.h:329:9: required from 'void seqan::loadScoreMatrix(seqan::Score >&, const CharString&, TMeta&) [with TValue = int; TSequenceValue = seqan::SimpleType; TSpec = seqan::Tag; TMeta = seqan::String >; seqan::CharString = seqan::String >]' /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:264:20: required from 'void SEQAN_TEST_test_score_matrix_file() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:707:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/score/test_score.cpp:48: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:42: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:33: /usr/include/c++/8/new: In function 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/include/seqan/seeds.h:50, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:38, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_sequence_stream.h:40, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:38, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_sequence_stream.h:40, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/include/seqan/seeds.h:50, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/include/seqan/sequence.h:51, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:47, from /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp:40: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::PageBucketExtended; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::PageBucketExtended; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::PageBucketExtended; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::PageBucketExtended; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::PageBucketExtended; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::PageBucketExtended; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(seqan::PriorityType&) [with TValue = seqan::PageBucketExtended; TLess = seqan::MergeStreamComparer >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = unsigned int; TPoolSpec = seqan::SorterSpec > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler > > >, seqan::Tag >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pool_base.h:664:11, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = unsigned int; TSpec = seqan::SorterSpec > >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/pipe/pool_base.h:919:4, inlined from 'void testSorter(unsigned int)' at /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp:269:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/tests/pipe/test_pipe.cpp:33: /usr/include/c++/8/new: In function 'void testSorter(unsigned int)': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/include/seqan/seeds.h:50, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:62, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_sequence_stream.h:40, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alignQualityStoreLengthPre == 0u) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' sortAlignedReads(store.alignedReadStore, SortBeginPos()); ^~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/include/seqan/seeds.h:52, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/include/seqan/seeds.h:52, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ [ 98%] Linking CXX executable ../../../bin/test_pipe cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/pipe && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_pipe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_pipe.dir/test_pipe.cpp.o -o ../../../bin/test_pipe -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target test_pipe make -f core/tests/sequence/CMakeFiles/test_sequence.dir/build.make core/tests/sequence/CMakeFiles/test_sequence.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/sequence /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/sequence /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/sequence/CMakeFiles/test_sequence.dir/DependInfo.cmake --color= Scanning dependencies of target test_sequence make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/sequence/CMakeFiles/test_sequence.dir/build.make core/tests/sequence/CMakeFiles/test_sequence.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 98%] Building CXX object core/tests/sequence/CMakeFiles/test_sequence.dir/test_sequence.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/sequence && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_sequence.dir/test_sequence.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:126, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_stree_iterators.cpp:46: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h: In function 'void seqan::testSTreeIterators() [with TIndexSpec = seqan::IndexWotd >]': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_esa_stree.h:2147:9: warning: '*((void*)& iter +8)' may be used uninitialized in this function [-Wmaybe-uninitialized] it._parentDesc = value(it); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_write_fasta.h:50:16: required from 'void SEQAN_TEST_test_stream_write_record_fasta_default() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:168:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_write_fasta.h:160:19: required from 'void SEQAN_TEST_test_stream_write_record_fastq_default_qual_in_seq() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:172:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = std::basic_fstream; TSpec = void; TTag = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:603:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader&, const Fastq&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = std::basic_fstream; TPass = seqan::DoublePass<>; seqan::Fastq = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fastq.h:53:25: required from 'void FASTQ_TEST(TRecordReader&) [with TRecordReader = seqan::RecordReader, seqan::DoublePass<> >]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fastq.h:159:15: required from 'void SEQAN_TEST_test_stream_record_reader_fastq_double_fstream() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:115:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:873:16: required from 'int seqan::_readFastAQ(seqan::StringSet&, seqan::StringSet&, seqan::StringSet&, seqan::RecordReader >&, bool, const TTag&) [with TIdString = seqan::String >; TIdSpec = seqan::Owner<>; TSeqString = seqan::String >; TSeqSpec = seqan::Owner<>; TQualString = seqan::String >; TQualSpec = seqan::Owner<>; TFile = std::basic_fstream; TSpec = void; TTag = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:985:23: required from 'int seqan::read2(seqan::StringSet&, seqan::StringSet&, seqan::RecordReader >&, const Fastq&) [with TIdString = seqan::String >; TIdSpec = seqan::Owner<>; TSeqString = seqan::String >; TSeqSpec = seqan::Owner<>; TFile = std::basic_fstream; TSpec = void; seqan::Fastq = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fastq.h:80:20: required from 'void FASTQ_TEST_BATCH(TRecordReader&) [with TRecordReader = seqan::RecordReader, seqan::DoublePass<> >]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fastq.h:173:21: required from 'void SEQAN_TEST_test_stream_record_reader_fastq_batch_single_fstream() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:116:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Alloc<> >; TString2 = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TValue = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:1032:20: required from 'typename seqan::EnableIf::Type, seqan::Tag >::Type, typename seqan::IsSameType::Type, seqan::Tag >::Type>::Type, int>::Type seqan::read2(seqan::StringSet&, seqan::StringSet&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TIdSpec = seqan::Owner >; TSeqString = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag; typename seqan::EnableIf::Type, seqan::Tag >::Type, typename seqan::IsSameType::Type, seqan::Tag >::Type>::Type, int>::Type = int]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fasta.h:140:20: required from 'void FASTA_TEST_BATCH_CONCAT(TRecordReader&) [with TRecordReader = seqan::RecordReader >, seqan::SinglePass > >]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fasta.h:274:28: required from 'void SEQAN_TEST_test_stream_record_reader_fasta_batch_single_concat_mmap() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:109:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet >, seqan::Owner > >; TValue = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:1032:20: required from 'typename seqan::EnableIf::Type, seqan::Tag >::Type, typename seqan::IsSameType::Type, seqan::Tag >::Type>::Type, int>::Type seqan::read2(seqan::StringSet&, seqan::StringSet&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TIdSpec = seqan::Owner >; TSeqString = seqan::String >; TSeqSpec = seqan::Owner >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag; typename seqan::EnableIf::Type, seqan::Tag >::Type, typename seqan::IsSameType::Type, seqan::Tag >::Type>::Type, int>::Type = int]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fastq.h:114:20: required from 'void FASTQ_TEST_BATCH_CONCAT(TRecordReader&) [with TRecordReader = seqan::RecordReader >, seqan::SinglePass > >]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fastq.h:259:28: required from 'void SEQAN_TEST_test_stream_record_reader_fastq_batch_single_concat_mmap() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:121:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String, seqan::Alloc<> >; TString2 = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet, seqan::Alloc<> >, seqan::Owner > >; TValue = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:1032:20: required from 'typename seqan::EnableIf::Type, seqan::Tag >::Type, typename seqan::IsSameType::Type, seqan::Tag >::Type>::Type, int>::Type seqan::read2(seqan::StringSet&, seqan::StringSet&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TIdSpec = seqan::Owner >; TSeqString = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag; typename seqan::EnableIf::Type, seqan::Tag >::Type, typename seqan::IsSameType::Type, seqan::Tag >::Type>::Type, int>::Type = int]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fasta.h:140:20: required from 'void FASTA_TEST_BATCH_CONCAT(TRecordReader&) [with TRecordReader = seqan::RecordReader >, seqan::SinglePass > >]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fasta.h:274:28: required from 'void SEQAN_TEST_test_stream_record_reader_fasta_batch_single_concat_mmap() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:109:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet >, seqan::Owner > >; TValue = seqan::String >]' /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:1032:20: required from 'typename seqan::EnableIf::Type, seqan::Tag >::Type, typename seqan::IsSameType::Type, seqan::Tag >::Type>::Type, int>::Type seqan::read2(seqan::StringSet&, seqan::StringSet&, seqan::RecordReader >&, const TTag&) [with TIdString = seqan::String >; TIdSpec = seqan::Owner >; TSeqString = seqan::String >; TSeqSpec = seqan::Owner >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag; typename seqan::EnableIf::Type, seqan::Tag >::Type, typename seqan::IsSameType::Type, seqan::Tag >::Type>::Type, int>::Type = int]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fastq.h:114:20: required from 'void FASTQ_TEST_BATCH_CONCAT(TRecordReader&) [with TRecordReader = seqan::RecordReader >, seqan::SinglePass > >]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fastq.h:259:28: required from 'void SEQAN_TEST_test_stream_record_reader_fastq_batch_single_concat_mmap() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:121:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1477:56: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:300:23: required from 'int seqan::_readSequenceFastAQ(seqan::String&, TRecordReader&, const TFormatTag&) [with TAlph = seqan::SimpleType; TSpec = seqan::Alloc<>; TRecordReader = seqan::RecordReader, seqan::SinglePass >; TFormatTag = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:394:30: required from 'int seqan::_readMetaAndSequence(TIdString&, TSeqString&, seqan::RecordReader&, const TTag&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = std::basic_fstream; TPass = seqan::SinglePass; TTag = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:561:31: required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader&, const Fasta&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TFile = std::basic_fstream; TPass = seqan::SinglePass; seqan::Fasta = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fasta.h:74:25: required from 'void FASTA_TEST_PROTEIN(TRecordReader&) [with TRecordReader = seqan::RecordReader, seqan::SinglePass >]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_stream_record_reader_fasta.h:324:23: required from 'void SEQAN_TEST_test_stream_record_reader_fasta_protein_single_fstream() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:161:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:64, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_sequence_stream.h:40, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] _fileFormat = this->_checkFormat(*_istreamReader); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here case SeqIOFileType_::FILE_TYPE_AUTO: ^~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:54, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_sequence_stream.h:40, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h: In function 'int seqan::_readFastAQ(seqan::StringSet&, seqan::StringSet&, seqan::StringSet&, seqan::RecordReader >&, bool, const TTag&) [with TIdString = seqan::String >; TIdSpec = seqan::Owner<>; TSeqString = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TQualString = seqan::String >; TQualSpec = seqan::Owner<>; TFile = std::basic_fstream; TSpec = void; TTag = seqan::Tag]': /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:893:17: warning: this statement may fall through [-Wimplicit-fallthrough=] if (i >= sequenceCount -1) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:895:13: note: here default: ^~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h: In function 'int seqan::_readFastAQ(seqan::StringSet&, seqan::StringSet&, seqan::StringSet&, seqan::RecordReader >&, bool, const TTag&) [with TIdString = seqan::String >; TIdSpec = seqan::Owner<>; TSeqString = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TQualString = seqan::String >; TQualSpec = seqan::Owner<>; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag]': /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:893:17: warning: this statement may fall through [-Wimplicit-fallthrough=] if (i >= sequenceCount -1) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:895:13: note: here default: ^~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h: In function 'int seqan::_readFastAQ(seqan::StringSet > >&, seqan::StringSet > >&, seqan::StringSet > >&, seqan::RecordReader >&, bool, const TTag&) [with TIdString = seqan::String >; TSeqString = seqan::String, seqan::Alloc<> >; TQualString = seqan::String >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag]': /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:792:17: warning: this statement may fall through [-Wimplicit-fallthrough=] if (i >= sequenceCount -1) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:794:13: note: here default: ^~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h: In function 'int seqan::_readFastAQ(seqan::StringSet&, seqan::StringSet&, seqan::StringSet&, seqan::RecordReader >&, bool, const TTag&) [with TIdString = seqan::String >; TIdSpec = seqan::Owner<>; TSeqString = seqan::String >; TSeqSpec = seqan::Owner<>; TQualString = seqan::String >; TQualSpec = seqan::Owner<>; TFile = std::basic_fstream; TSpec = void; TTag = seqan::Tag]': /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:893:17: warning: this statement may fall through [-Wimplicit-fallthrough=] if (i >= sequenceCount -1) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:895:13: note: here default: ^~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h: In function 'int seqan::_readFastAQ(seqan::StringSet&, seqan::StringSet&, seqan::StringSet&, seqan::RecordReader >&, bool, const TTag&) [with TIdString = seqan::String >; TIdSpec = seqan::Owner<>; TSeqString = seqan::String >; TSeqSpec = seqan::Owner<>; TQualString = seqan::String >; TQualSpec = seqan::Owner<>; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag]': /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:893:17: warning: this statement may fall through [-Wimplicit-fallthrough=] if (i >= sequenceCount -1) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:895:13: note: here default: ^~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h: In function 'int seqan::_readFastAQ(seqan::StringSet > >&, seqan::StringSet > >&, seqan::StringSet > >&, seqan::RecordReader >&, bool, const TTag&) [with TIdString = seqan::String >; TSeqString = seqan::String >; TQualString = seqan::String >; TFile = seqan::String >; TSpec = seqan::Tag; TTag = seqan::Tag]': /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:792:17: warning: this statement may fall through [-Wimplicit-fallthrough=] if (i >= sequenceCount -1) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/read_fasta_fastq.h:794:13: note: here default: ^~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ [ 98%] Linking CXX executable ../../../bin/test_score cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/score && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_score.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_score.dir/test_score.cpp.o -o ../../../bin/test_score -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target test_score make -f core/tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make core/tests/sequence/CMakeFiles/test_sequence_v2.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/sequence /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/sequence /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/sequence/CMakeFiles/test_sequence_v2.dir/DependInfo.cmake --color= Scanning dependencies of target test_sequence_v2 make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/sequence/CMakeFiles/test_sequence_v2.dir/build.make core/tests/sequence/CMakeFiles/test_sequence_v2.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 98%] Building CXX object core/tests/sequence/CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/sequence && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence_v2.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::Pair; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::Pair; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::Pair; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc<> >; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::pop(T&) [with T = seqan::String, seqan::Alloc<> >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_block.h:598:11, inlined from 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]' at /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_childtab.h:284:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/index/test_index_fm.cpp:35: /usr/include/c++/8/new: In function 'void seqan::createChildtab(TDest&, const TLCPInput&) [with TLCPInput = seqan::String >; TDest = seqan::String >]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.h:43, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence_v2.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_string.h:545:16: required from 'void SEQAN_TEST_String_Packed() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp:81:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const char*; TExpand = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1445:42: required from 'void seqan::append(seqan::String&, TSourceValue*, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSourceValue = const char; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_string.h:549:15: required from 'void SEQAN_TEST_String_Packed() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp:81:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const char*; TExpand = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1445:42: required from 'void seqan::append(seqan::String&, TSourceValue*, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSourceValue = const char; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_string.h:549:15: required from 'void SEQAN_TEST_String_Packed() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp:81:2: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ [ 98%] Linking CXX executable ../../../bin/test_index_fm_rank_dictionary cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm_rank_dictionary.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_fm_rank_dictionary.dir/test_index_fm_rank_dictionary.cpp.o -o ../../../bin/test_index_fm_rank_dictionary -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target test_index_fm_rank_dictionary make -f core/tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make core/tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/sequence_journaled /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/sequence_journaled /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/DependInfo.cmake --color= Scanning dependencies of target test_sequence_journaled make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build.make core/tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 98%] Building CXX object core/tests/sequence_journaled/CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/sequence_journaled && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/sequence_journaled/test_sequence_journaled.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence_v2.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2091:19: required from 'typename seqan::Size::Type seqan::reserve(T&, const TSize&) [with T = seqan::String, seqan::Alloc<> >; TSize = unsigned int; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.h:1575:12: required from 'void testSequenceReserve(TString&) [with TString = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.h:1595:24: required from 'void StringTestCommon__Reserve::runTest() [with SEQAN_TParam = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.h:1590:1: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence_v2.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence_v2.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(seqan::String&, TSize, TPosition, TPosition, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1562:67: required from 'static void seqan::ReplaceString_::replace_(TTarget&, typename seqan::Size::Type, typename seqan::Size::Type, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1618:44: required from 'void seqan::replace(seqan::String&, TPositionBegin, TPositionEnd, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TPositionBegin = int; TPositionEnd = int; TSource = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:1909:12: required from 'void seqan::replace(TTarget&, TPositionBegin, TPositionEnd, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TPositionBegin = int; TPositionEnd = int; TSource = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.h:1525:16: required from 'void testSequenceReplace(TString&) [with TString = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.h:1561:24: required from 'void StringTestCommon__Replace::runTest() [with SEQAN_TParam = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.h:1556:1: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence_v2.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence_v2.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1562:67: required from 'static void seqan::ReplaceString_::replace_(TTarget&, typename seqan::Size::Type, typename seqan::Size::Type, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1618:44: required from 'void seqan::replace(seqan::String&, TPositionBegin, TPositionEnd, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TPositionBegin = int; TPositionEnd = int; TSource = seqan::String, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:1909:12: required from 'void seqan::replace(TTarget&, TPositionBegin, TPositionEnd, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TPositionBegin = int; TPositionEnd = int; TSource = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.h:1525:16: required from 'void testSequenceReplace(TString&) [with TString = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.h:1561:24: required from 'void StringTestCommon__Replace::runTest() [with SEQAN_TParam = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.h:1556:1: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence_v2.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/sequence_journaled/test_sequence_journaled.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds_combination.h:259:19: required from 'void SEQAN_TEST_test_seeds_combination_combine_seeds_simple_chaos_chaining_chained() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:93:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/seeds/test_banded_chain_alignment_interface.h:600:20: required from 'void SEQAN_TEST_test_banded_chain_alignment_gaps_linear_global_one_score() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:208:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >*>; TValue = seqan::String >*; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::String >*; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >*>; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >*>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String >*>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /usr/include/c++/8/new: In function 'void seqan::eraseBack(T&) [with T = seqan::String >*>]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io/fai_index.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/seq_io.h:83, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_sequence_stream.h:40, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/seq_io/test_seq_io.cpp:35: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp:36: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >*, seqan::Alloc<> >; TValue = seqan::String >*; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::String >*; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >*, seqan::Alloc<> >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::removeValueById(seqan::StringSet > >&, TId) [with TString = seqan::String >; TId = unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_dependent_generous.h:248:15: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/sequence/test_sequence.cpp:36: /usr/include/c++/8/new: In function 'void seqan::removeValueById(seqan::StringSet > >&, TId) [with TString = seqan::String >; TId = unsigned int]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds_extension.h:357:17: required from 'void testSeedsExtensionGappedXDropExtension(const TSeedSpec&) [with TSeedSpec = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds_extension.h:473:43: required from 'void SEQAN_TEST_test_seeds_extension_gapped_xdrop_extension_simple() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:166:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ [ 99%] Linking CXX executable ../../../bin/test_sequence_journaled cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/sequence_journaled && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequence_journaled.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_sequence_journaled.dir/test_sequence_journaled.cpp.o -o ../../../bin/test_sequence_journaled -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test_sequence_journaled make -f core/tests/store/CMakeFiles/test_store.dir/build.make core/tests/store/CMakeFiles/test_store.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/store /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/store /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/store/CMakeFiles/test_store.dir/DependInfo.cmake --color= Scanning dependencies of target test_store make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/store/CMakeFiles/test_store.dir/build.make core/tests/store/CMakeFiles/test_store.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 99%] Building CXX object core/tests/store/CMakeFiles/test_store.dir/test_store.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/store && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_store.dir/test_store.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/stream.h:86, from /build/seqan-1.4.2+dfsg/core/include/seqan/score.h:42, from /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align.h:45, from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:54, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:38, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store_io.h:38, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:38, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store_io.h:38, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:38, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store_io.h:38, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:62, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store_io.h:38, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore&, const TScore&, const TShrinkMatches&)': /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (alignQualityStoreLengthPre == 0u) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' sortAlignedReads(store.alignedReadStore, SortBeginPos()); ^~~~~~~~~~~~~~~~ [ 99%] Linking CXX executable ../../../bin/test_seq_io cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/seq_io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seq_io.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_seq_io.dir/test_seq_io.cpp.o -o ../../../bin/test_seq_io -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test_seq_io make -f core/tests/stream/CMakeFiles/test_stream.dir/build.make core/tests/stream/CMakeFiles/test_stream.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/stream /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/stream /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/stream/CMakeFiles/test_stream.dir/DependInfo.cmake --color= Scanning dependencies of target test_stream make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/stream/CMakeFiles/test_stream.dir/build.make core/tests/stream/CMakeFiles/test_stream.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 99%] Building CXX object core/tests/stream/CMakeFiles/test_stream.dir/test_stream.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/stream && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_stream.dir/test_stream.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/stream/test_stream.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TValue = seqan::SimpleType; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_io.h:695:18: required from 'int seqan::read(TFile&, seqan::FragmentStore&, Amos) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/store/test_store_io.h:545:19: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:57:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; TId = unsigned int; typename seqan::Size::TReadStore>::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_io.h:452:15: required from 'int seqan::read(TFile&, seqan::FragmentStore&, Amos) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/store/test_store_io.h:545:19: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:57:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType*; TSource1 = seqan::SimpleType*; TSource2 = seqan::SimpleType*]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType; size_t = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(seqan::String&, const TSource&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TSource = seqan::String >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(seqan::StringSet > >&, const TString2&, seqan::Tag) [with TString = seqan::String >; TString2 = seqan::String >; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(seqan::FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TRead = seqan::String >; TId = unsigned int; typename seqan::Size::TReadStore>::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/store/store_io.h:452:15: required from 'int seqan::read(TFile&, seqan::FragmentStore&, Amos) [with TFile = std::basic_fstream; TSpec = void; TConfig = seqan::FragmentStoreConfig; seqan::Amos = const seqan::Tag]' /build/seqan-1.4.2+dfsg/core/tests/store/test_store_io.h:545:19: required from 'void SEQAN_TEST_test_store_io_read_amos() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:57:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:39: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:56, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store_io.h:38, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] insertGaps(it, cigar[i].count); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h:535:13: note: here case 'I': ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps, seqan::Alloc<> > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] insertGaps(it, cigar[i].count); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h:535:13: note: here case 'I': ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = seqan::String >; TGaps = seqan::Gaps, seqan::Alloc<> > > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=] insertGaps(it, cigar[i].count); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/cigar.h:565:13: note: here case 'D': ^~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/tests/stream/test_stream.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/stream/test_stream.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const char; TExpand = seqan::Tag]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(seqan::String&, const TValue&, seqan::Tag) [with TTargetValue = seqan::SimpleType; TTargetSpec = seqan::Alloc<>; TValue = char; TExpand = seqan::TagGenerous_]' /build/seqan-1.4.2+dfsg/core/include/seqan/stream/tokenize.h:413:24: required from 'int seqan::_readHelper(TBuffer&, TRecordReader&, const seqan::Tag&, const seqan::Tag&, bool) [with TTagSpec = seqan::Dna5_; TTagSpec2 = seqan::Whitespace__; TRecordReader = seqan::RecordReader, seqan::SinglePass >; TBuffer = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/include/seqan/stream/tokenize.h:2271:23: required from 'int seqan::readDna5IgnoringWhitespaces(TBuffer&, seqan::RecordReader&) [with TStream = std::basic_fstream; TPass = seqan::SinglePass; TBuffer = seqan::String, seqan::Alloc<> >]' /build/seqan-1.4.2+dfsg/core/tests/stream/test_stream_tokenize.h:342:5: required from 'void SEQAN_TEST_test_stream_tokenizing_readIgnoring() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /build/seqan-1.4.2+dfsg/core/tests/stream/test_stream.cpp:270:5: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/stream/test_stream.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ [ 99%] Linking CXX executable ../../../bin/test_sequence cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_sequence.dir/test_sequence.cpp.o -o ../../../bin/test_sequence -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test_sequence make -f core/tests/swift_local/CMakeFiles/test_find_swift.dir/build.make core/tests/swift_local/CMakeFiles/test_find_swift.dir/depend make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-1.4.2+dfsg /build/seqan-1.4.2+dfsg/core/tests/swift_local /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/swift_local /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/swift_local/CMakeFiles/test_find_swift.dir/DependInfo.cmake --color= Scanning dependencies of target test_find_swift make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' make -f core/tests/swift_local/CMakeFiles/test_find_swift.dir/build.make core/tests/swift_local/CMakeFiles/test_find_swift.dir/build make[3]: Entering directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 99%] Building CXX object core/tests/swift_local/CMakeFiles/test_find_swift.dir/test_find_swift.cpp.o cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/swift_local && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/seqan-1.4.2+dfsg/core/include -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -o CMakeFiles/test_find_swift.dir/test_find_swift.cpp.o -c /build/seqan-1.4.2+dfsg/core/tests/swift_local/test_find_swift.cpp In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/file/stream_algorithms.h:40, from /build/seqan-1.4.2+dfsg/core/include/seqan/file.h:91, from /build/seqan-1.4.2+dfsg/core/include/seqan/pipe.h:41, from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:40, from /build/seqan-1.4.2+dfsg/core/tests/swift_local/test_find_swift.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /build/seqan-1.4.2+dfsg/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] if (c == EOF) ^ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:109, from /build/seqan-1.4.2+dfsg/core/tests/swift_local/test_find_swift.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[isa - 1] = h; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet&, const TSA&, seqan::Kasai)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' LCP[i] = h | mark; ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:128, from /build/seqan-1.4.2+dfsg/core/tests/swift_local/test_find_swift.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index > >&, TSize, TSize)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation] } else ^~~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) ^~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/index.h:157, from /build/seqan-1.4.2+dfsg/core/tests/swift_local/test_find_swift.cpp:37: /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; ^~~ /build/seqan-1.4.2+dfsg/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:166, from /build/seqan-1.4.2+dfsg/core/include/seqan/seeds.h:52, from /build/seqan-1.4.2+dfsg/core/tests/swift_local/test_find_swift.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String&, const seqan::String&, const MyersBitVector&)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (length(seqH) < length(seqV)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; ^~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/align.h:174, from /build/seqan-1.4.2+dfsg/core/include/seqan/seeds.h:52, from /build/seqan-1.4.2+dfsg/core/tests/swift_local/test_find_swift.cpp:38: /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ((actualCol == 0) || (actualRow == 0)) ^~ /build/seqan-1.4.2+dfsg/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); ^~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io.h:59, from /build/seqan-1.4.2+dfsg/core/include/seqan/store.h:41, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store_io.h:38, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:40: /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String >; TSourceIter = seqan::Iter >, seqan::AdaptorIterator > >]': /build/seqan-1.4.2+dfsg/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] snprintf(buffer, 4, "%d", x); ^~~~ In file included from /usr/include/stdio.h:873, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6400, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/store/test_store.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_fundamental.h:79, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:58, from /build/seqan-1.4.2+dfsg/core/tests/swift_local/test_find_swift.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]': /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType; TValueTarget = seqan::SimpleType]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]' /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /build/seqan-1.4.2+dfsg/core/tests/swift_local/test_find_swift.cpp:65:19: required from here /build/seqan-1.4.2+dfsg/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_alphabet.h:84, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:68, from /build/seqan-1.4.2+dfsg/core/tests/swift_local/test_find_swift.cpp:36: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here class SimpleType ^~~~~~~~~~ In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/stream/test_stream.cpp:37: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >*>; TValue = seqan::String >*; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::String >*; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >*>; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >*>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String >*>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'bool seqan::_fillNextBuffer(seqan::RecordReader >&) [with TFile = std::__cxx11::basic_stringstream]' at /build/seqan-1.4.2+dfsg/core/include/seqan/stream/record_reader_double.h:165:18: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/stream/test_stream.cpp:37: /usr/include/c++/8/new: In function 'bool seqan::_fillNextBuffer(seqan::RecordReader >&) [with TFile = std::__cxx11::basic_stringstream]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 99%] Linking CXX executable ../../../bin/test_index_stree_iterators cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_stree_iterators.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_stree_iterators.dir/test_index_stree_iterators.cpp.o -o ../../../bin/test_index_stree_iterators -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test_index_stree_iterators In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/stream/test_stream.cpp:37: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >*>; TValue = seqan::String >*; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = seqan::String >*; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >*>; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::String >*; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String >*>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = seqan::String >*>]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void seqan::startFirstPass(seqan::RecordReader >&) [with TFile = std::__cxx11::basic_stringstream]' at /build/seqan-1.4.2+dfsg/core/include/seqan/stream/record_reader_double.h:239:18: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/stream/test_stream.cpp:37: /usr/include/c++/8/new: In function 'void seqan::startFirstPass(seqan::RecordReader >&) [with TFile = std::__cxx11::basic_stringstream]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [ 99%] Linking CXX executable ../../../bin/test_find_swift cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/swift_local && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_find_swift.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_find_swift.dir/test_find_swift.cpp.o -o ../../../bin/test_find_swift -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target test_find_swift [100%] Linking CXX executable ../../../bin/test_stream cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/stream && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_stream.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_stream.dir/test_stream.cpp.o -o ../../../bin/test_stream -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [100%] Built target test_stream [100%] Linking CXX executable ../../../bin/test_store cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/store && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_store.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_store.dir/test_store.cpp.o -o ../../../bin/test_store -lrt -lz make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [100%] Built target test_store [100%] Linking CXX executable ../../../bin/test_align cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_align.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_align.dir/test_align.cpp.o -o ../../../bin/test_align -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [100%] Built target test_align In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:37: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:37: /usr/include/c++/8/new: In function 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [100%] Linking CXX executable ../../../bin/test_index_fm cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/index && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_index_fm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -Wl,-z,relro -rdynamic CMakeFiles/test_index_fm.dir/test_index_fm.cpp.o -o ../../../bin/test_index_fm -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [100%] Built target test_index_fm [100%] Linking CXX executable ../../../bin/test_sequence_v2 cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/sequence && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sequence_v2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_sequence_v2.dir/test_sequence_v2.cpp.o -o ../../../bin/test_sequence_v2 -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [100%] Built target test_sequence_v2 In file included from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_allocator.h:53, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:74, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:37: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag&) [with T = seqan::String >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(seqan::String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(seqan::String&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(seqan::String&, TSize_, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /build/seqan-1.4.2+dfsg/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(seqan::IdManager&) [with TIdType = unsigned int; TSpec = seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'bool seqan::convertAlignment(const seqan::Graph >&, TComponentMap&, TOrderMap&, TComponentLength&) [with TStringSet = seqan::StringSet >, seqan::Dependent > >; TCargo = void; TSpec = seqan::Tag; TComponentMap = seqan::String >; TOrderMap = seqan::String >; TComponentLength = std::map]' at /build/seqan-1.4.2+dfsg/core/include/seqan/graph_align/graph_impl_align.h:1755:49: /build/seqan-1.4.2+dfsg/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] */ data = (TValue *) operator new(count * sizeof(TValue)); ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/exception_ptr.h:40, from /usr/include/c++/8/exception:143, from /usr/include/c++/8/ios:39, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/debug_test_system.h:46, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic/basic_debug.h:52, from /build/seqan-1.4.2+dfsg/core/include/seqan/basic.h:49, from /build/seqan-1.4.2+dfsg/core/tests/seeds/test_seeds.cpp:37: /usr/include/c++/8/new: In function 'bool seqan::convertAlignment(const seqan::Graph >&, TComponentMap&, TOrderMap&, TComponentLength&) [with TStringSet = seqan::StringSet >, seqan::Dependent > >; TCargo = void; TSpec = seqan::Tag; TComponentMap = seqan::String >; TOrderMap = seqan::String >; TComponentLength = std::map]': /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) ^~~~~~~~ [100%] Linking CXX executable ../../../bin/test_seeds cd /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/core/tests/seeds && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_seeds.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-1.4.2+dfsg=. -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -Wl,-z,relro -rdynamic CMakeFiles/test_seeds.dir/test_seeds.cpp.o -o ../../../bin/test_seeds -lrt make[3]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' [100%] Built target test_seeds make[2]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/seqan-1.4.2+dfsg/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/seqan-1.4.2+dfsg' echo "Do not run test suite when building on architecture arm64" Do not run test suite when building on architecture arm64 make[1]: Leaving directory '/build/seqan-1.4.2+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep rm -f -- debian/seqan-dev.substvars rm -fr -- debian/.debhelper/generated/seqan-dev/ debian/seqan-dev/ debian/tmp/ dh_auto_install install -d /build/seqan-1.4.2\+dfsg/debian/seqan-dev debian/rules override_dh_install make[1]: Entering directory '/build/seqan-1.4.2+dfsg' dh_install install -d debian/seqan-dev/usr/include cp --reflink=auto -a ./core/include/seqan debian/seqan-dev/usr/include/ install -d debian/seqan-dev/usr/lib cp --reflink=auto -a ./util/cmake debian/seqan-dev/usr/lib/ install -d debian/.debhelper/generated/seqan-dev # ------------------------------------------------------------------ # Delete additional LICENSE files if [ -d /build/seqan-1.4.2+dfsg/debian/seqan-dev ] ; then \ find /build/seqan-1.4.2+dfsg/debian/seqan-dev -type f -name LICENSE -delete ; \ # Delete *.pyc files that somehow end up in seqan-dev documentation \ find /build/seqan-1.4.2+dfsg/debian/seqan-dev -type f -name "*.pyc" -delete ; \ fi make[1]: Leaving directory '/build/seqan-1.4.2+dfsg' dh_installdocs install -d debian/seqan-dev/usr/share/doc/seqan-dev install -p -m0644 debian/README.Debian debian/seqan-dev/usr/share/doc/seqan-dev/README.Debian install -p -m0644 debian/copyright debian/seqan-dev/usr/share/doc/seqan-dev/copyright dh_installchangelogs install -p -m0644 debian/changelog debian/seqan-dev/usr/share/doc/seqan-dev/changelog.Debian dh_perl dh_link dh_strip_nondeterminism Using 1531736514 as canonical time Normalizing debian/seqan-dev/usr/lib/cmake/ctd/icons/category.png using File::StripNondeterminism::handlers::png Normalizing debian/seqan-dev/usr/lib/cmake/ctd/icons/splash.png using File::StripNondeterminism::handlers::png Normalizing debian/seqan-dev/usr/lib/cmake/ctd/icons/app.png using File::StripNondeterminism::handlers::png dh_compress cd debian/seqan-dev chmod a-x usr/share/doc/seqan-dev/changelog.Debian gzip -9nf usr/share/doc/seqan-dev/changelog.Debian cd '/build/seqan-1.4.2+dfsg' rm -f debian/seqan-dev.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/seqan-1.4.2+dfsg' dh_fixperms find debian/seqan-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/seqan-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/seqan-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/seqan-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/seqan-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/seqan-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/seqan-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/seqan-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/*/usr/lib/cmake -type f -exec chmod -x \{\} \; make[1]: Leaving directory '/build/seqan-1.4.2+dfsg' dh_missing dh_installdeb install -d debian/seqan-dev/DEBIAN dh_gencontrol echo misc:Depends= >> debian/seqan-dev.substvars echo misc:Pre-Depends= >> debian/seqan-dev.substvars dpkg-gencontrol -pseqan-dev -ldebian/changelog -Tdebian/seqan-dev.substvars -Pdebian/seqan-dev -UMulti-Arch dpkg-gencontrol: warning: Depends field of package seqan-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/seqan-dev/DEBIAN/control chown 0:0 -- debian/seqan-dev/DEBIAN/control dh_md5sums cd debian/seqan-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/seqan-dev/DEBIAN/md5sums chown 0:0 -- debian/seqan-dev/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/seqan-dev .. dpkg-deb: building package 'seqan-dev' in '../seqan-dev_1.4.2+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../seqan_1.4.2+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/29832 and its subdirectories I: Current time: Wed Jul 22 11:21:44 -12 2020 I: pbuilder-time-stamp: 1595460104