I: pbuilder: network access will be disabled during build I: Current time: Mon Sep 6 03:09:18 -12 2021 I: pbuilder-time-stamp: 1630940958 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [rdkit_201809.1+dfsg-6.dsc] I: copying [./rdkit_201809.1+dfsg.orig.tar.xz] I: copying [./rdkit_201809.1+dfsg-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 31 01:20:34 2019 -12 gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rdkit_201809.1+dfsg-6.dsc dpkg-source: info: extracting rdkit in rdkit-201809.1+dfsg dpkg-source: info: unpacking rdkit_201809.1+dfsg.orig.tar.xz dpkg-source: info: unpacking rdkit_201809.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying NoDownloads.patch dpkg-source: info: applying postgres_v11_support.patch dpkg-source: info: applying postgres_Makefile_fixes.patch dpkg-source: info: applying postgres_disable_failing_tests.patch dpkg-source: info: applying sphinx_imgconverter.patch dpkg-source: info: applying catch2_header.patch dpkg-source: info: applying testcase_32bit_fix.patch dpkg-source: info: applying fix_coordgen_include_path.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1126/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1126' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Y4PqpsqMzN/pbuilderrc_TJ9q --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Y4PqpsqMzN/b1 --logfile b1/build.log rdkit_201809.1+dfsg-6.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled9-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 5 02:49 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/1126/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: bison, cmake, debhelper (>> 9), dh-python, doxygen, flex, imagemagick, latexmk, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libschroedinger-coordgenlibs-dev, libschroedinger-maeparser-dev, librsvg2-bin, libsqlite3-dev, pandoc, postgresql-server-dev-all, python-dev, python-pil, python-numpy, python-pandas, python3-sphinx, python3-recommonmark, rapidjson-dev, texlive-fonts-recommended, texlive-generic-extra, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>> 9); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on imagemagick; however: Package imagemagick is not installed. pbuilder-satisfydepends-dummy depends on latexmk; however: Package latexmk is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-regex-dev; however: Package libboost-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libschroedinger-coordgenlibs-dev; however: Package libschroedinger-coordgenlibs-dev is not installed. pbuilder-satisfydepends-dummy depends on libschroedinger-maeparser-dev; however: Package libschroedinger-maeparser-dev is not installed. pbuilder-satisfydepends-dummy depends on librsvg2-bin; however: Package librsvg2-bin is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on postgresql-server-dev-all; however: Package postgresql-server-dev-all is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-pil; however: Package python-pil is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-pandas; however: Package python-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-recommonmark; however: Package python3-recommonmark is not installed. pbuilder-satisfydepends-dummy depends on rapidjson-dev; however: Package rapidjson-dev is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-generic-extra; however: Package texlive-generic-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bison{a} bsdmainutils{a} ca-certificates{a} clang-7{a} cmake{a} cmake-data{a} dbus{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} distro-info-data{a} dmsetup{a} docutils-common{a} doxygen{a} dwz{a} file{a} flex{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} glib-networking{a} glib-networking-common{a} glib-networking-services{a} groff-base{a} gsettings-desktop-schemas{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} icu-devtools{a} imagemagick{a} imagemagick-6-common{a} imagemagick-6.q16{a} intltool-debian{a} latexmk{a} libapparmor1{a} libarchive-zip-perl{a} libarchive13{a} libargon2-1{a} libatk-bridge2.0-0{a} libatk1.0-0{a} libatk1.0-data{a} libatspi2.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbison-dev{a} libblas3{a} libboost-atomic1.67-dev{a} libboost-atomic1.67.0{a} libboost-chrono1.67-dev{a} libboost-chrono1.67.0{a} libboost-date-time1.67-dev{a} libboost-date-time1.67.0{a} libboost-dev{a} libboost-python-dev{a} libboost-python1.67-dev{a} libboost-python1.67.0{a} libboost-regex-dev{a} libboost-regex1.67-dev{a} libboost-regex1.67.0{a} libboost-serialization1.67-dev{a} libboost-serialization1.67.0{a} libboost-system-dev{a} libboost-system1.67-dev{a} libboost-thread-dev{a} libboost-thread1.67-dev{a} libboost-thread1.67.0{a} libboost1.67-dev{a} libbrotli1{a} libbsd0{a} libcairo-gobject2{a} libcairo2{a} libcap2{a} libclang-common-7-dev{a} libclang1-6.0{a} libclang1-7{a} libcolord2{a} libcroco3{a} libcryptsetup12{a} libcups2{a} libcupsimage2{a} libcurl4{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdevmapper1.02.1{a} libedit2{a} libelf1{a} libepoxy0{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf2.0-0{a} libgdk-pixbuf2.0-common{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a} libgtk-3-0{a} libgtk-3-common{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libheif1{a} libice6{a} libicu-dev{a} libicu63{a} libidn11{a} libijs-0.35{a} libimagequant0{a} libip4tc0{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-c3{a} libjson-glib-1.0-0{a} libjson-glib-1.0-common{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkmod2{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libllvm6.0{a} libllvm7{a} liblqr-1-0{a} libltdl7{a} liblua5.1-0{a} libmagic-mgc{a} libmagic1{a} libmagickcore-6.q16-6{a} libmagickwand-6.q16-6{a} libmpdec2{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnuma1{a} libobjc-8-dev{a} libobjc4{a} libopenjp2-7{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpotrace0{a} libpq-dev{a} libpq5{a} libprocps7{a} libproxy1v5{a} libpsl5{a} libptexenc1{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librest-0.7-0{a} librhash0{a} librsvg2-2{a} librsvg2-bin{a} librsvg2-common{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libschroedinger-coordgenlibs-dev{a} libschroedinger-coordgenlibs1{a} libschroedinger-maeparser-dev{a} libschroedinger-maeparser1{a} libsigsegv2{a} libsm6{a} libsoup-gnome2.4-1{a} libsoup2.4-1{a} libsqlite3-dev{a} libssh2-1{a} libssl1.1{a} libsynctex2{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libthai-data{a} libthai0{a} libtiff5{a} libtinfo-dev{a} libtool{a} libuchardet0{a} libuv1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libwoff1{a} libx11-6{a} libx11-data{a} libx265-165{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxmu6{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxt6{a} libxxhash0{a} libyaml-0-2{a} libzzip-0-13{a} llvm-7{a} llvm-7-dev{a} llvm-7-runtime{a} lsb-base{a} lsb-release{a} m4{a} man-db{a} mime-support{a} netbase{a} openssl{a} pandoc{a} pandoc-data{a} po-debconf{a} poppler-data{a} postgresql-client-common{a} postgresql-common{a} postgresql-server-dev-11{a} postgresql-server-dev-all{a} preview-latex-style{a} procps{a} python{a} python-babel-localedata{a} python-dateutil{a} python-dev{a} python-minimal{a} python-numpy{a} python-pandas{a} python-pandas-lib{a} python-pil{a} python-pkg-resources{a} python-six{a} python-tz{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-alabaster{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-commonmark-bkrs{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-packaging{a} python3-pkg-resources{a} python3-pygments{a} python3-pyparsing{a} python3-recommonmark{a} python3-requests{a} python3-roman{a} python3-six{a} python3-sphinx{a} python3-tz{a} python3-urllib3{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} rapidjson-dev{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} sphinx-common{a} ssl-cert{a} systemd{a} systemd-sysv{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-generic-extra{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} ucf{a} x11-common{a} xdg-utils{a} xkb-data{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: at-spi2-core atril curl evince fonts-droid-fallback ghostscript gsfonts gv javascript-common krb5-locales libarchive-cpio-perl libcupsfilters1 libfile-mimeinfo-perl libfl-dev libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk-3-bin libltdl-dev libmagickcore-6.q16-6-extra libmail-sendmail-perl libnet-dbus-perl libnss-systemd libomp-7-dev libsasl2-modules libx11-protocol-perl lmodern logrotate lynx mupdf netpbm okular psmisc publicsuffix python-bs4 python-html5lib python-lxml python-matplotlib python-numexpr python-olefile python-openpyxl python-scipy python-statsmodels python-tables python-xlrd python-xlwt python3-pil ruby tex-gyre tipa tk viewpdf.app wget x11-utils x11-xserver-utils xdg-user-dirs xpdf zathura-pdf-poppler zathura-ps 0 packages upgraded, 354 newly installed, 0 to remove and 0 not upgraded. Need to get 361 MB of archives. After unpacking 1606 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libapparmor1 arm64 2.13.2-10 [93.8 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 libcap2 arm64 1:2.25-2 [17.5 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libargon2-1 arm64 0~20171227-0.2 [18.9 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 dmsetup arm64 2:1.02.155-3 [83.9 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libdevmapper1.02.1 arm64 2:1.02.155-3 [124 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 libjson-c3 arm64 0.12.1+ds-2 [26.5 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 libcryptsetup12 arm64 2:2.1.0-5+deb10u2 [181 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 libidn11 arm64 1.33-2.2 [113 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 libip4tc0 arm64 1.8.2-4 [69.6 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libkmod2 arm64 26-1 [49.4 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 systemd arm64 241-7~deb10u4 [3256 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 systemd-sysv arm64 241-7~deb10u4 [99.9 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 flex arm64 2.6.4-6.2 [446 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 libfftw3-double3 arm64 3.3.8-2 [385 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 libpng16-16 arm64 1.6.36-6 [287 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 libfreetype6 arm64 2.9.1-3+deb10u1 [355 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 ucf all 3.0038+nmu1 [69.0 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 fontconfig-config all 2.13.1-2 [280 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libfontconfig1 arm64 2.13.1-2 [343 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libde265-0 arm64 1.0.3-1+b1 [205 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libnuma1 arm64 2.0.12-1 [25.6 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 libx265-165 arm64 2.9-4 [536 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libheif1 arm64 1.3.2-2~deb10u1 [114 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 liblcms2-2 arm64 2.9-3 [137 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 liblqr-1-0 arm64 0.4.2-2.1 [23.9 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libltdl7 arm64 2.4.6-9 [389 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libopenjp2-7 arm64 2.3.0-2+deb10u1 [148 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 libwebp6 arm64 0.6.1-2 [233 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 libtiff5 arm64 4.1.0+git191117-2~deb10u1 [259 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libwebpmux3 arm64 0.6.1-2 [95.4 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 libxau6 arm64 1:1.0.8-1+b2 [19.3 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 libxcb1 arm64 1.13.1-2 [135 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libx11-data all 2:1.6.7-1 [298 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libx11-6 arm64 2:1.6.7-1 [735 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libxext6 arm64 2:1.3.3-1+b2 [48.6 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 imagemagick-6-common all 8:6.9.10.23+dfsg-2.1+deb10u1 [200 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libmagickcore-6.q16-6 arm64 8:6.9.10.23+dfsg-2.1+deb10u1 [1594 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libmagickwand-6.q16-6 arm64 8:6.9.10.23+dfsg-2.1+deb10u1 [387 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 poppler-data all 0.4.9-2 [1473 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u2 [588 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u2 [1404 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u2 [1641 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u2 [330 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 sgml-base all 1.29 [14.8 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 tex-common all 6.11 [53.1 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 netbase all 5.6 [19.4 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 libprocps7 arm64 2:3.3.15-2 [58.0 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 lsb-base all 10.2019051400 [28.4 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 procps arm64 2:3.3.15-2 [245 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 libdbus-1-3 arm64 1.12.20-0+deb10u1 [206 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 dbus arm64 1.12.20-0+deb10u1 [227 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 89 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 92 http://deb.debian.org/debian buster/main arm64 libpam-systemd arm64 241-7~deb10u4 [200 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 shared-mime-info arm64 1.10-1 [764 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 libgdk-pixbuf2.0-common all 2.38.1+dfsg-1 [316 kB] Get: 96 http://deb.debian.org/debian buster/main arm64 libgdk-pixbuf2.0-0 arm64 2.38.1+dfsg-1 [166 kB] Get: 97 http://deb.debian.org/debian buster/main arm64 gtk-update-icon-cache arm64 3.24.5-1 [81.0 kB] Get: 98 http://deb.debian.org/debian buster/main arm64 libpixman-1-0 arm64 0.36.0-1 [436 kB] Get: 99 http://deb.debian.org/debian buster/main arm64 libxcb-render0 arm64 1.13.1-2 [108 kB] Get: 100 http://deb.debian.org/debian buster/main arm64 libxcb-shm0 arm64 1.13.1-2 [99.3 kB] Get: 101 http://deb.debian.org/debian buster/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 102 http://deb.debian.org/debian buster/main arm64 libcairo2 arm64 1.16.0-4 [644 kB] Get: 103 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 104 http://deb.debian.org/debian buster/main arm64 fontconfig arm64 2.13.1-2 [405 kB] Get: 105 http://deb.debian.org/debian buster/main arm64 libfribidi0 arm64 1.0.5-3.1+deb10u1 [63.6 kB] Get: 106 http://deb.debian.org/debian buster/main arm64 libthai-data all 0.1.28-2 [170 kB] Get: 107 http://deb.debian.org/debian buster/main arm64 libdatrie1 arm64 0.2.12-2 [38.6 kB] Get: 108 http://deb.debian.org/debian buster/main arm64 libthai0 arm64 0.1.28-2 [52.8 kB] Get: 109 http://deb.debian.org/debian buster/main arm64 libpango-1.0-0 arm64 1.42.4-8~deb10u1 [179 kB] Get: 110 http://deb.debian.org/debian buster/main arm64 libgraphite2-3 arm64 1.3.13-7 [75.8 kB] Get: 111 http://deb.debian.org/debian buster/main arm64 libharfbuzz0b arm64 2.3.1-1 [1155 kB] Get: 112 http://deb.debian.org/debian buster/main arm64 libpangoft2-1.0-0 arm64 1.42.4-8~deb10u1 [65.7 kB] Get: 113 http://deb.debian.org/debian buster/main arm64 libpangocairo-1.0-0 arm64 1.42.4-8~deb10u1 [54.0 kB] Get: 114 http://deb.debian.org/debian buster/main arm64 librsvg2-2 arm64 2.44.10-2.1 [1048 kB] Get: 115 http://deb.debian.org/debian buster/main arm64 librsvg2-common arm64 2.44.10-2.1 [23.3 kB] Get: 116 http://deb.debian.org/debian buster/main arm64 adwaita-icon-theme all 3.30.1-1 [11.7 MB] Get: 117 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 118 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 119 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 120 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 121 http://deb.debian.org/debian buster/main arm64 binfmt-support arm64 2.2.0-2 [67.0 kB] Get: 122 http://deb.debian.org/debian buster/main arm64 libbison-dev arm64 2:3.3.2.dfsg-1 [500 kB] Get: 123 http://deb.debian.org/debian buster/main arm64 bison arm64 2:3.3.2.dfsg-1 [855 kB] Get: 124 http://deb.debian.org/debian buster/main arm64 openssl arm64 1.1.1d-0+deb10u3 [823 kB] Get: 125 http://deb.debian.org/debian buster/main arm64 ca-certificates all 20190110 [157 kB] Get: 126 http://deb.debian.org/debian buster/main arm64 libedit2 arm64 3.1-20181209-1 [91.2 kB] Get: 127 http://deb.debian.org/debian buster/main arm64 libllvm7 arm64 1:7.0.1-8 [10.8 MB] Get: 128 http://deb.debian.org/debian buster/main arm64 libobjc4 arm64 8.3.0-6 [38.3 kB] Get: 129 http://deb.debian.org/debian buster/main arm64 libobjc-8-dev arm64 8.3.0-6 [199 kB] Get: 130 http://deb.debian.org/debian buster/main arm64 libclang-common-7-dev arm64 1:7.0.1-8 [2098 kB] Get: 131 http://deb.debian.org/debian buster/main arm64 libclang1-7 arm64 1:7.0.1-8 [4882 kB] Get: 132 http://deb.debian.org/debian buster/main arm64 clang-7 arm64 1:7.0.1-8 [6379 kB] Get: 133 http://deb.debian.org/debian buster/main arm64 cmake-data all 3.13.4-1 [1476 kB] Get: 134 http://deb.debian.org/debian buster/main arm64 libarchive13 arm64 3.3.3-4+deb10u1 [291 kB] Get: 135 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 136 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 137 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 138 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 139 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 140 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 141 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 142 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 143 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 144 http://deb.debian.org/debian buster/main arm64 libnghttp2-14 arm64 1.36.0-2+deb10u1 [81.9 kB] Get: 145 http://deb.debian.org/debian buster/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get: 146 http://deb.debian.org/debian buster/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get: 147 http://deb.debian.org/debian buster/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get: 148 http://deb.debian.org/debian buster/main arm64 libcurl4 arm64 7.64.0-4+deb10u1 [312 kB] Get: 149 http://deb.debian.org/debian buster/main arm64 libjsoncpp1 arm64 1.7.4-3 [71.0 kB] Get: 150 http://deb.debian.org/debian buster/main arm64 librhash0 arm64 1.3.8-1 [121 kB] Get: 151 http://deb.debian.org/debian buster/main arm64 libuv1 arm64 1.24.1-1 [105 kB] Get: 152 http://deb.debian.org/debian buster/main arm64 cmake arm64 3.13.4-1 [3046 kB] Get: 153 http://deb.debian.org/debian buster/main arm64 dbus-user-session arm64 1.12.20-0+deb10u1 [94.5 kB] Get: 154 http://deb.debian.org/debian buster/main arm64 libdconf1 arm64 0.30.1-2 [39.3 kB] Get: 155 http://deb.debian.org/debian buster/main arm64 dconf-service arm64 0.30.1-2 [34.9 kB] Get: 156 http://deb.debian.org/debian buster/main arm64 dconf-gsettings-backend arm64 0.30.1-2 [27.5 kB] Get: 157 http://deb.debian.org/debian buster/main arm64 dctrl-tools arm64 2.24-3 [101 kB] Get: 158 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 159 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 160 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 161 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 162 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 163 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 164 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 165 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 166 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 167 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 168 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 169 http://deb.debian.org/debian buster/main arm64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 170 http://deb.debian.org/debian buster/main arm64 python3-distutils all 3.7.3-1 [142 kB] Get: 171 http://deb.debian.org/debian buster/main arm64 dh-python all 3.20190308 [99.3 kB] Get: 172 http://deb.debian.org/debian buster/main arm64 distro-info-data all 0.41+deb10u2 [6584 B] Get: 173 http://deb.debian.org/debian buster/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get: 174 http://deb.debian.org/debian buster/main arm64 docutils-common all 0.14+dfsg-4 [167 kB] Get: 175 http://deb.debian.org/debian buster/main arm64 libllvm6.0 arm64 1:6.0.1-10 [13.1 MB] Get: 176 http://deb.debian.org/debian buster/main arm64 libclang1-6.0 arm64 1:6.0.1-10 [6190 kB] Get: 177 http://deb.debian.org/debian buster/main arm64 doxygen arm64 1.8.13-10 [3701 kB] Get: 178 http://deb.debian.org/debian buster/main arm64 fonts-lmodern all 2.004.5-6 [4539 kB] Get: 179 http://deb.debian.org/debian buster/main arm64 libproxy1v5 arm64 0.4.15-5 [53.3 kB] Get: 180 http://deb.debian.org/debian buster/main arm64 glib-networking-common all 2.58.0-2+deb10u2 [59.5 kB] Get: 181 http://deb.debian.org/debian buster/main arm64 glib-networking-services arm64 2.58.0-2+deb10u2 [13.6 kB] Get: 182 http://deb.debian.org/debian buster/main arm64 gsettings-desktop-schemas all 3.28.1-1 [529 kB] Get: 183 http://deb.debian.org/debian buster/main arm64 glib-networking arm64 2.58.0-2+deb10u2 [52.3 kB] Get: 184 http://deb.debian.org/debian buster/main arm64 icu-devtools arm64 63.1-6+deb10u1 [179 kB] Get: 185 http://deb.debian.org/debian buster/main arm64 imagemagick-6.q16 arm64 8:6.9.10.23+dfsg-2.1+deb10u1 [580 kB] Get: 186 http://deb.debian.org/debian buster/main arm64 imagemagick arm64 8:6.9.10.23+dfsg-2.1+deb10u1 [156 kB] Get: 187 http://deb.debian.org/debian buster/main arm64 libpaper1 arm64 1.1.28 [21.1 kB] Get: 188 http://deb.debian.org/debian buster/main arm64 libpaper-utils arm64 1.1.28 [18.0 kB] Get: 189 http://deb.debian.org/debian buster/main arm64 libkpathsea6 arm64 2018.20181218.49446-1 [164 kB] Get: 190 http://deb.debian.org/debian buster/main arm64 libptexenc1 arm64 2018.20181218.49446-1 [60.3 kB] Get: 191 http://deb.debian.org/debian buster/main arm64 libsynctex2 arm64 2018.20181218.49446-1 [77.8 kB] Get: 192 http://deb.debian.org/debian buster/main arm64 libtexlua52 arm64 2018.20181218.49446-1 [107 kB] Get: 193 http://deb.debian.org/debian buster/main arm64 libtexlua53 arm64 2018.20181218.49446-1 [118 kB] Get: 194 http://deb.debian.org/debian buster/main arm64 t1utils arm64 1.41-3 [59.7 kB] Get: 195 http://deb.debian.org/debian buster/main arm64 libbrotli1 arm64 1.0.7-2 [261 kB] Get: 196 http://deb.debian.org/debian buster/main arm64 libgs9-common all 9.27~dfsg-2+deb10u3 [5136 kB] Get: 197 http://deb.debian.org/debian buster/main arm64 libavahi-common-data arm64 0.7-4+b1 [122 kB] Get: 198 http://deb.debian.org/debian buster/main arm64 libavahi-common3 arm64 0.7-4+b1 [53.5 kB] Get: 199 http://deb.debian.org/debian buster/main arm64 libavahi-client3 arm64 0.7-4+b1 [56.8 kB] Get: 200 http://deb.debian.org/debian buster/main arm64 libcups2 arm64 2.2.10-6+deb10u3 [310 kB] Get: 201 http://deb.debian.org/debian buster/main arm64 libcupsimage2 arm64 2.2.10-6+deb10u3 [132 kB] Get: 202 http://deb.debian.org/debian buster/main arm64 libijs-0.35 arm64 0.35-14 [17.9 kB] Get: 203 http://deb.debian.org/debian buster/main arm64 libjbig2dec0 arm64 0.16-1 [58.1 kB] Get: 204 http://deb.debian.org/debian buster/main arm64 libgs9 arm64 9.27~dfsg-2+deb10u3 [2029 kB] Get: 205 http://deb.debian.org/debian buster/main arm64 libharfbuzz-icu0 arm64 2.3.1-1 [834 kB] Get: 206 http://deb.debian.org/debian buster/main arm64 x11-common all 1:7.7+19 [251 kB] Get: 207 http://deb.debian.org/debian buster/main arm64 libice6 arm64 2:1.0.9-2 [52.0 kB] Get: 208 http://deb.debian.org/debian buster/main arm64 libpotrace0 arm64 1.15-1 [23.6 kB] Get: 209 http://deb.debian.org/debian buster/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 210 http://deb.debian.org/debian buster/main arm64 libteckit0 arm64 2.5.8+ds2-5 [284 kB] Get: 211 http://deb.debian.org/debian buster/main arm64 libwoff1 arm64 1.0.2-1 [40.7 kB] Get: 212 http://deb.debian.org/debian buster/main arm64 libxt6 arm64 1:1.1.5-1+b3 [175 kB] Get: 213 http://deb.debian.org/debian buster/main arm64 libxmu6 arm64 2:1.1.2-2+b3 [57.8 kB] Get: 214 http://deb.debian.org/debian buster/main arm64 libxpm4 arm64 1:3.5.12-1 [43.9 kB] Get: 215 http://deb.debian.org/debian buster/main arm64 libxaw7 arm64 2:1.0.13-1+b2 [167 kB] Get: 216 http://deb.debian.org/debian buster/main arm64 libxi6 arm64 2:1.7.9-1 [79.0 kB] Get: 217 http://deb.debian.org/debian buster/main arm64 libxxhash0 arm64 0.6.5-2 [7684 B] Get: 218 http://deb.debian.org/debian buster/main arm64 libzzip-0-13 arm64 0.13.62-3.2 [55.5 kB] Get: 219 http://deb.debian.org/debian buster/main arm64 texlive-binaries arm64 2018.20181218.49446-1 [8464 kB] Get: 220 http://deb.debian.org/debian buster/main arm64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 221 http://deb.debian.org/debian buster/main arm64 texlive-base all 2018.20190227-2 [19.7 MB] Get: 222 http://deb.debian.org/debian buster/main arm64 texlive-latex-base all 2018.20190227-2 [984 kB] Get: 223 http://deb.debian.org/debian buster/main arm64 latexmk all 1:4.61-0.1 [390 kB] Get: 224 http://deb.debian.org/debian buster/main arm64 libatk1.0-data all 2.30.0-2 [145 kB] Get: 225 http://deb.debian.org/debian buster/main arm64 libatk1.0-0 arm64 2.30.0-2 [48.3 kB] Get: 226 http://deb.debian.org/debian buster/main arm64 libatspi2.0-0 arm64 2.30.0-7 [61.7 kB] Get: 227 http://deb.debian.org/debian buster/main arm64 libatk-bridge2.0-0 arm64 2.30.0-5 [58.3 kB] Get: 228 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 229 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 230 http://deb.debian.org/debian buster/main arm64 libboost1.67-dev arm64 1.67.0-13+deb10u1 [8388 kB] Get: 231 http://deb.debian.org/debian buster/main arm64 libboost-atomic1.67.0 arm64 1.67.0-13+deb10u1 [226 kB] Get: 232 http://deb.debian.org/debian buster/main arm64 libboost-atomic1.67-dev arm64 1.67.0-13+deb10u1 [225 kB] Get: 233 http://deb.debian.org/debian buster/main arm64 libboost-chrono1.67.0 arm64 1.67.0-13+deb10u1 [233 kB] Get: 234 http://deb.debian.org/debian buster/main arm64 libboost-chrono1.67-dev arm64 1.67.0-13+deb10u1 [235 kB] Get: 235 http://deb.debian.org/debian buster/main arm64 libboost-date-time1.67.0 arm64 1.67.0-13+deb10u1 [238 kB] Get: 236 http://deb.debian.org/debian buster/main arm64 libboost-serialization1.67.0 arm64 1.67.0-13+deb10u1 [311 kB] Get: 237 http://deb.debian.org/debian buster/main arm64 libboost-serialization1.67-dev arm64 1.67.0-13+deb10u1 [358 kB] Get: 238 http://deb.debian.org/debian buster/main arm64 libboost-date-time1.67-dev arm64 1.67.0-13+deb10u1 [248 kB] Get: 239 http://deb.debian.org/debian buster/main arm64 libboost-dev arm64 1.67.0.1 [3864 B] Get: 240 http://deb.debian.org/debian buster/main arm64 libboost-python1.67.0 arm64 1.67.0-13+deb10u1 [316 kB] Get: 241 http://deb.debian.org/debian buster/main arm64 libpython2.7 arm64 2.7.16-2+deb10u1 [958 kB] Get: 242 http://deb.debian.org/debian buster/main arm64 libexpat1-dev arm64 2.2.6-2+deb10u1 [128 kB] Get: 243 http://deb.debian.org/debian buster/main arm64 libpython2.7-dev arm64 2.7.16-2+deb10u1 [31.5 MB] Get: 244 http://deb.debian.org/debian buster/main arm64 libpython2-dev arm64 2.7.16-1 [20.9 kB] Get: 245 http://deb.debian.org/debian buster/main arm64 libpython-dev arm64 2.7.16-1 [20.9 kB] Get: 246 http://deb.debian.org/debian buster/main arm64 python2.7-dev arm64 2.7.16-2+deb10u1 [296 kB] Get: 247 http://deb.debian.org/debian buster/main arm64 python2-dev arm64 2.7.16-1 [1216 B] Get: 248 http://deb.debian.org/debian buster/main arm64 python-dev arm64 2.7.16-1 [1192 B] Get: 249 http://deb.debian.org/debian buster/main arm64 libpython3.7 arm64 3.7.3-2+deb10u2 [1371 kB] Get: 250 http://deb.debian.org/debian buster/main arm64 libpython3.7-dev arm64 3.7.3-2+deb10u2 [2380 kB] Get: 251 http://deb.debian.org/debian buster/main arm64 libpython3-dev arm64 3.7.3-1 [20.1 kB] Get: 252 http://deb.debian.org/debian buster/main arm64 python3.7-dev arm64 3.7.3-2+deb10u2 [509 kB] Get: 253 http://deb.debian.org/debian buster/main arm64 python3-dev arm64 3.7.3-1 [1264 B] Get: 254 http://deb.debian.org/debian buster/main arm64 libboost-python1.67-dev arm64 1.67.0-13+deb10u1 [329 kB] Get: 255 http://deb.debian.org/debian buster/main arm64 libboost-python-dev arm64 1.67.0.1 [3948 B] Get: 256 http://deb.debian.org/debian buster/main arm64 libboost-regex1.67.0 arm64 1.67.0-13+deb10u1 [458 kB] Get: 257 http://deb.debian.org/debian buster/main arm64 libicu-dev arm64 63.1-6+deb10u1 [9062 kB] Get: 258 http://deb.debian.org/debian buster/main arm64 libboost-regex1.67-dev arm64 1.67.0-13+deb10u1 [517 kB] Get: 259 http://deb.debian.org/debian buster/main arm64 libboost-regex-dev arm64 1.67.0.1 [3916 B] Get: 260 http://deb.debian.org/debian buster/main arm64 libboost-system1.67-dev arm64 1.67.0-13+deb10u1 [231 kB] Get: 261 http://deb.debian.org/debian buster/main arm64 libboost-system-dev arm64 1.67.0.1 [3788 B] Get: 262 http://deb.debian.org/debian buster/main arm64 libboost-thread1.67.0 arm64 1.67.0-13+deb10u1 [264 kB] Get: 263 http://deb.debian.org/debian buster/main arm64 libboost-thread1.67-dev arm64 1.67.0-13+deb10u1 [270 kB] Get: 264 http://deb.debian.org/debian buster/main arm64 libboost-thread-dev arm64 1.67.0.1 [3672 B] Get: 265 http://deb.debian.org/debian buster/main arm64 libcairo-gobject2 arm64 1.16.0-4 [124 kB] Get: 266 http://deb.debian.org/debian buster/main arm64 libcolord2 arm64 1.4.3-4 [131 kB] Get: 267 http://deb.debian.org/debian buster/main arm64 libepoxy0 arm64 1.5.3-0.1 [197 kB] Get: 268 http://deb.debian.org/debian buster/main arm64 libffi-dev arm64 3.2.1-9 [155 kB] Get: 269 http://deb.debian.org/debian buster/main arm64 libjson-glib-1.0-common all 1.4.4-2 [52.3 kB] Get: 270 http://deb.debian.org/debian buster/main arm64 libjson-glib-1.0-0 arm64 1.4.4-2 [56.0 kB] Get: 271 http://deb.debian.org/debian buster/main arm64 libsoup2.4-1 arm64 2.64.2-2 [239 kB] Get: 272 http://deb.debian.org/debian buster/main arm64 libsoup-gnome2.4-1 arm64 2.64.2-2 [17.8 kB] Get: 273 http://deb.debian.org/debian buster/main arm64 librest-0.7-0 arm64 0.8.1-1 [31.6 kB] Get: 274 http://deb.debian.org/debian buster/main arm64 libwayland-client0 arm64 1.16.0-1 [25.9 kB] Get: 275 http://deb.debian.org/debian buster/main arm64 libwayland-cursor0 arm64 1.16.0-1 [14.1 kB] Get: 276 http://deb.debian.org/debian buster/main arm64 libwayland-egl1 arm64 1.16.0-1 [8188 B] Get: 277 http://deb.debian.org/debian buster/main arm64 libxcomposite1 arm64 1:0.4.4-2 [16.1 kB] Get: 278 http://deb.debian.org/debian buster/main arm64 libxfixes3 arm64 1:5.0.3-1 [21.0 kB] Get: 279 http://deb.debian.org/debian buster/main arm64 libxcursor1 arm64 1:1.1.15-2 [36.0 kB] Get: 280 http://deb.debian.org/debian buster/main arm64 libxdamage1 arm64 1:1.1.4-3+b3 [14.8 kB] Get: 281 http://deb.debian.org/debian buster/main arm64 libxinerama1 arm64 2:1.1.4-2 [17.7 kB] Get: 282 http://deb.debian.org/debian buster/main arm64 xkb-data all 2.26-2 [681 kB] Get: 283 http://deb.debian.org/debian buster/main arm64 libxkbcommon0 arm64 0.8.2-1 [118 kB] Get: 284 http://deb.debian.org/debian buster/main arm64 libxrandr2 arm64 2:1.5.1-1 [35.3 kB] Get: 285 http://deb.debian.org/debian buster/main arm64 libgtk-3-common all 3.24.5-1 [3678 kB] Get: 286 http://deb.debian.org/debian buster/main arm64 libgtk-3-0 arm64 3.24.5-1 [2398 kB] Get: 287 http://deb.debian.org/debian buster/main arm64 libimagequant0 arm64 2.12.2-1.1 [30.3 kB] Get: 288 http://deb.debian.org/debian buster/main arm64 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 289 http://deb.debian.org/debian buster/main arm64 libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] Get: 290 http://deb.debian.org/debian buster/main arm64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 291 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 292 http://deb.debian.org/debian buster/main arm64 liblua5.1-0 arm64 5.1.5-8.1+b2 [97.2 kB] Get: 293 http://deb.debian.org/debian buster/main arm64 libncurses-dev arm64 6.1+20181013-2+deb10u2 [324 kB] Get: 294 http://deb.debian.org/debian buster/main arm64 libpq5 arm64 11.7-0+deb10u1 [162 kB] Get: 295 http://deb.debian.org/debian buster/main arm64 libpq-dev arm64 11.7-0+deb10u1 [159 kB] Get: 296 http://deb.debian.org/debian buster/main arm64 librsvg2-bin arm64 2.44.10-2.1 [34.2 kB] Get: 297 http://deb.debian.org/debian buster/main arm64 libschroedinger-maeparser1 arm64 1.0.1-4 [40.7 kB] Get: 298 http://deb.debian.org/debian buster/main arm64 libschroedinger-coordgenlibs1 arm64 1.1-3 [155 kB] Get: 299 http://deb.debian.org/debian buster/main arm64 libschroedinger-coordgenlibs-dev arm64 1.1-3 [27.8 kB] Get: 300 http://deb.debian.org/debian buster/main arm64 libschroedinger-maeparser-dev arm64 1.0.1-4 [10.6 kB] Get: 301 http://deb.debian.org/debian buster/main arm64 libsqlite3-dev arm64 3.27.2-3 [745 kB] Get: 302 http://deb.debian.org/debian buster/main arm64 libtinfo-dev arm64 6.1+20181013-2+deb10u2 [944 B] Get: 303 http://deb.debian.org/debian buster/main arm64 libwebpdemux2 arm64 0.6.1-2 [86.8 kB] Get: 304 http://deb.debian.org/debian buster/main arm64 libyaml-0-2 arm64 0.2.1-1 [41.4 kB] Get: 305 http://deb.debian.org/debian buster/main arm64 llvm-7-runtime arm64 1:7.0.1-8 [159 kB] Get: 306 http://deb.debian.org/debian buster/main arm64 llvm-7 arm64 1:7.0.1-8 [3606 kB] Get: 307 http://deb.debian.org/debian buster/main arm64 llvm-7-dev arm64 1:7.0.1-8 [19.3 MB] Get: 308 http://deb.debian.org/debian buster/main arm64 lsb-release all 10.2019051400 [27.5 kB] Get: 309 http://deb.debian.org/debian buster/main arm64 pandoc-data all 2.2.1-3 [329 kB] Get: 310 http://deb.debian.org/debian buster/main arm64 pandoc arm64 2.2.1-3+b2 [18.3 MB] Get: 311 http://deb.debian.org/debian buster/main arm64 postgresql-client-common all 200+deb10u3 [84.9 kB] Get: 312 http://deb.debian.org/debian buster/main arm64 ssl-cert all 1.0.39 [20.8 kB] Get: 313 http://deb.debian.org/debian buster/main arm64 postgresql-common all 200+deb10u3 [225 kB] Get: 314 http://deb.debian.org/debian buster/main arm64 postgresql-server-dev-11 arm64 11.7-0+deb10u1 [934 kB] Get: 315 http://deb.debian.org/debian buster/main arm64 postgresql-server-dev-all all 200+deb10u3 [74.2 kB] Get: 316 http://deb.debian.org/debian buster/main arm64 preview-latex-style all 11.91-2 [201 kB] Get: 317 http://deb.debian.org/debian buster/main arm64 python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB] Get: 318 http://deb.debian.org/debian buster/main arm64 python-six all 1.12.0-1 [15.7 kB] Get: 319 http://deb.debian.org/debian buster/main arm64 python-dateutil all 2.7.3-3 [76.8 kB] Get: 320 http://deb.debian.org/debian buster/main arm64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 321 http://deb.debian.org/debian buster/main arm64 python-numpy arm64 1:1.16.2-1 [1975 kB] Get: 322 http://deb.debian.org/debian buster/main arm64 python-tz all 2019.1-1 [33.6 kB] Get: 323 http://deb.debian.org/debian buster/main arm64 python-pandas-lib arm64 0.23.3+dfsg-3 [2611 kB] Get: 324 http://deb.debian.org/debian buster/main arm64 python-pandas all 0.23.3+dfsg-3 [1750 kB] Get: 325 http://deb.debian.org/debian buster/main arm64 python-pil arm64 5.4.1-2+deb10u2 [381 kB] Get: 326 http://deb.debian.org/debian buster/main arm64 python3-alabaster all 0.7.8-1 [18.4 kB] Get: 327 http://deb.debian.org/debian buster/main arm64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 328 http://deb.debian.org/debian buster/main arm64 python3-tz all 2019.1-1 [27.1 kB] Get: 329 http://deb.debian.org/debian buster/main arm64 python3-babel all 2.6.0+dfsg.1-1 [96.7 kB] Get: 330 http://deb.debian.org/debian buster/main arm64 python3-certifi all 2018.8.24-1 [140 kB] Get: 331 http://deb.debian.org/debian buster/main arm64 python3-chardet all 3.0.4-3 [80.5 kB] Get: 332 http://deb.debian.org/debian buster/main arm64 python3-commonmark-bkrs all 0.5.4+ds-2 [28.2 kB] Get: 333 http://deb.debian.org/debian buster/main arm64 python3-roman all 2.0.0-3 [8768 B] Get: 334 http://deb.debian.org/debian buster/main arm64 python3-docutils all 0.14+dfsg-4 [378 kB] Get: 335 http://deb.debian.org/debian buster/main arm64 python3-idna all 2.6-1 [34.3 kB] Get: 336 http://deb.debian.org/debian buster/main arm64 python3-imagesize all 1.0.0-1 [4960 B] Get: 337 http://deb.debian.org/debian buster/main arm64 python3-markupsafe arm64 1.1.0-1 [14.8 kB] Get: 338 http://deb.debian.org/debian buster/main arm64 python3-jinja2 all 2.10-2 [106 kB] Get: 339 http://deb.debian.org/debian buster/main arm64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get: 340 http://deb.debian.org/debian buster/main arm64 python3-six all 1.12.0-1 [15.7 kB] Get: 341 http://deb.debian.org/debian buster/main arm64 python3-packaging all 19.0-1 [20.5 kB] Get: 342 http://deb.debian.org/debian buster/main arm64 python3-pygments all 2.3.1+dfsg-1 [594 kB] Get: 343 http://deb.debian.org/debian buster/main arm64 python3-recommonmark all 0.4.0+ds-5 [14.9 kB] Get: 344 http://deb.debian.org/debian buster/main arm64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get: 345 http://deb.debian.org/debian buster/main arm64 python3-requests all 2.21.0-1 [66.9 kB] Get: 346 http://deb.debian.org/debian buster/main arm64 sphinx-common all 1.8.4-1 [500 kB] Get: 347 http://deb.debian.org/debian buster/main arm64 python3-sphinx all 1.8.4-1 [481 kB] Get: 348 http://deb.debian.org/debian buster/main arm64 rapidjson-dev all 1.1.0+dfsg2-5 [98.7 kB] Get: 349 http://deb.debian.org/debian buster/main arm64 texlive-fonts-recommended all 2018.20190227-2 [5228 kB] Get: 350 http://deb.debian.org/debian buster/main arm64 texlive-plain-generic all 2018.20190227-2 [24.3 MB] Get: 351 http://deb.debian.org/debian buster/main arm64 texlive-generic-extra all 2018.20190227-2 [32.2 kB] Get: 352 http://deb.debian.org/debian buster/main arm64 texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get: 353 http://deb.debian.org/debian buster/main arm64 texlive-pictures all 2018.20190227-2 [8201 kB] Get: 354 http://deb.debian.org/debian buster/main arm64 texlive-latex-extra all 2018.20190227-2 [12.3 MB] Fetched 361 MB in 41s (8748 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libapparmor1_2.13.2-10_arm64.deb ... Unpacking libapparmor1:arm64 (2.13.2-10) ... Selecting previously unselected package libcap2:arm64. Preparing to unpack .../01-libcap2_1%3a2.25-2_arm64.deb ... Unpacking libcap2:arm64 (1:2.25-2) ... Selecting previously unselected package libargon2-1:arm64. Preparing to unpack .../02-libargon2-1_0~20171227-0.2_arm64.deb ... Unpacking libargon2-1:arm64 (0~20171227-0.2) ... Selecting previously unselected package dmsetup. Preparing to unpack .../03-dmsetup_2%3a1.02.155-3_arm64.deb ... Unpacking dmsetup (2:1.02.155-3) ... Selecting previously unselected package libdevmapper1.02.1:arm64. Preparing to unpack .../04-libdevmapper1.02.1_2%3a1.02.155-3_arm64.deb ... Unpacking libdevmapper1.02.1:arm64 (2:1.02.155-3) ... Selecting previously unselected package libjson-c3:arm64. Preparing to unpack .../05-libjson-c3_0.12.1+ds-2_arm64.deb ... Unpacking libjson-c3:arm64 (0.12.1+ds-2) ... Selecting previously unselected package libssl1.1:arm64. Preparing to unpack .../06-libssl1.1_1.1.1d-0+deb10u3_arm64.deb ... Unpacking libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Selecting previously unselected package libcryptsetup12:arm64. Preparing to unpack .../07-libcryptsetup12_2%3a2.1.0-5+deb10u2_arm64.deb ... Unpacking libcryptsetup12:arm64 (2:2.1.0-5+deb10u2) ... 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Setting up libdevmapper1.02.1:arm64 (2:1.02.155-3) ... Setting up libcryptsetup12:arm64 (2:2.1.0-5+deb10u2) ... Setting up systemd (241-7~deb10u4) ... Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service -> /lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target -> /lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/dbus-org.freedesktop.timesync1.service -> /lib/systemd/system/systemd-timesyncd.service. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service -> /lib/systemd/system/systemd-timesyncd.service. Initializing machine ID from random generator. Setting up dmsetup (2:1.02.155-3) ... Selecting previously unselected package systemd-sysv. (Reading database ... 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Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' Unpacking postgresql-common (200+deb10u3) ... Selecting previously unselected package postgresql-server-dev-11. Preparing to unpack .../236-postgresql-server-dev-11_11.7-0+deb10u1_arm64.deb ... Unpacking postgresql-server-dev-11 (11.7-0+deb10u1) ... Selecting previously unselected package postgresql-server-dev-all. Preparing to unpack .../237-postgresql-server-dev-all_200+deb10u3_all.deb ... Unpacking postgresql-server-dev-all (200+deb10u3) ... Selecting previously unselected package preview-latex-style. Preparing to unpack .../238-preview-latex-style_11.91-2_all.deb ... Unpacking preview-latex-style (11.91-2) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../239-python-babel-localedata_2.6.0+dfsg.1-1_all.deb ... Unpacking python-babel-localedata (2.6.0+dfsg.1-1) ... Selecting previously unselected package python-six. 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Setting up libboost-chrono1.67.0:arm64 (1.67.0-13+deb10u1) ... Setting up mime-support (3.62) ... Setting up libtexlua52:arm64 (2018.20181218.49446-1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up libbison-dev:arm64 (2:3.3.2.dfsg-1) ... Setting up libdatrie1:arm64 (0.2.12-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libtexlua53:arm64 (2018.20181218.49446-1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libyaml-0-2:arm64 (0.2.1-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... Setting up distro-info-data (0.41+deb10u2) ... Setting up libijs-0.35:arm64 (0.35-14) ... Setting up libprocps7:arm64 (2:3.3.15-2) ... Setting up libbrotli1:arm64 (1.0.7-2) ... Setting up libgdk-pixbuf2.0-common (2.38.1+dfsg-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:arm64 (1.36.0-2+deb10u1) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up xkb-data (2.26-2) ... Setting up libobjc4:arm64 (8.3.0-6) ... Setting up libzzip-0-13:arm64 (0.13.62-3.2) ... Setting up libboost-date-time1.67.0:arm64 (1.67.0-13+deb10u1) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libffi-dev:arm64 (3.2.1-9) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up libcolord2:arm64 (1.4.3-4) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1) ... Setting up rapidjson-dev (1.1.0+dfsg2-5) ... Setting up libschroedinger-maeparser1:arm64 (1.0.1-4) ... Setting up poppler-data (0.4.9-2) ... Setting up libkrb5support0:arm64 (1.17-3) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... 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Setting up libfribidi0:arm64 (1.0.5-3.1+deb10u1) ... Setting up t1utils (1.41-3) ... Setting up libimagequant0:arm64 (2.12.2-1.1) ... Setting up libpng16-16:arm64 (1.6.36-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up binfmt-support (2.2.0-2) ... Created symlink /etc/systemd/system/multi-user.target.wants/binfmt-support.service -> /lib/systemd/system/binfmt-support.service. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libwebp6:arm64 (0.6.1-2) ... Setting up icu-devtools (63.1-6+deb10u1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libk5crypto3:arm64 (1.17-3) ... Setting up libltdl7:arm64 (2.4.6-9) ... Setting up libfftw3-double3:arm64 (3.3.8-2) ... Setting up libkpathsea6:arm64 (2018.20181218.49446-1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:arm64 (8.3.0-6) ... Setting up libatk1.0-data (2.30.0-2) ... Setting up libnuma1:arm64 (2.0.12-1) ... Setting up liblqr-1-0:arm64 (0.4.2-2.1) ... Setting up sensible-utils (0.0.12) ... Setting up librhash0:arm64 (1.3.8-1) ... Setting up libxxhash0:arm64 (0.6.5-2) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up liblua5.1-0:arm64 (5.1.5-8.1+b2) ... Setting up libboost-python1.67.0 (1.67.0-13+deb10u1) ... Setting up libpam-systemd:arm64 (241-7~deb10u4) ... Setting up fonts-lmodern (2.004.5-6) ... Setting up libopenjp2-7:arm64 (2.3.0-2+deb10u1) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:arm64 (1.8.0-2.1) ... Setting up netbase (5.6) ... Setting up libboost-atomic1.67.0:arm64 (1.67.0-13+deb10u1) ... Setting up libjson-glib-1.0-common (1.4.4-2) ... Setting up sgml-base (1.29) ... Setting up cmake-data (3.13.4-1) ... Setting up libboost-system1.67-dev:arm64 (1.67.0-13+deb10u1) ... Setting up libatk1.0-0:arm64 (2.30.0-2) ... Setting up libkrb5-3:arm64 (1.17-3) ... Setting up libboost-dev:arm64 (1.67.0.1) ... Setting up libtiff5:arm64 (4.1.0+git191117-2~deb10u1) ... Setting up libwayland-egl1:arm64 (1.16.0-1) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up pandoc-data (2.2.1-3) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up glib-networking-common (2.58.0-2+deb10u2) ... Setting up libde265-0:arm64 (1.0.3-1+b1) ... Setting up libboost-serialization1.67.0:arm64 (1.67.0-13+deb10u1) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libwebpmux3:arm64 (0.6.1-2) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libicu-dev:arm64 (63.1-6+deb10u1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up dctrl-tools (2.24-3) ... Setting up libjsoncpp1:arm64 (1.7.4-3) ... Setting up libsynctex2:arm64 (2018.20181218.49446-1) ... 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Setting up libboost-thread1.67.0:arm64 (1.67.0-13+deb10u1) ... Setting up libpython3.7:arm64 (3.7.3-2+deb10u2) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:arm64 (3.3.3-4+deb10u1) ... Setting up libxcb-render0:arm64 (1.13.1-2) ... Setting up libx265-165:arm64 (2.9-4) ... Setting up libboost-regex1.67-dev:arm64 (1.67.0-13+deb10u1) ... Setting up libpython3.7-dev:arm64 (3.7.3-2+deb10u2) ... Setting up libwebpdemux2:arm64 (0.6.1-2) ... Setting up libedit2:arm64 (3.1-20181209-1) ... Setting up libboost-system-dev:arm64 (1.67.0.1) ... Setting up libheif1:arm64 (1.3.2-2~deb10u1) ... Setting up libavahi-common3:arm64 (0.7-4+b1) ... Setting up libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libschroedinger-coordgenlibs1:arm64 (1.1-3) ... Setting up libxcb-shm0:arm64 (1.13.1-2) ... Setting up libllvm6.0:arm64 (1:6.0.1-10) ... Setting up libclang1-6.0:arm64 (1:6.0.1-10) ... Setting up libjson-glib-1.0-0:arm64 (1.4.4-2) ... Setting up libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Setting up libthai0:arm64 (0.1.28-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up dbus-user-session (1.12.20-0+deb10u1) ... Setting up libboost-date-time1.67-dev:arm64 (1.67.0-13+deb10u1) ... Setting up libblas3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up doxygen (1.8.13-10) ... Setting up libptexenc1:arm64 (2018.20181218.49446-1) ... Setting up pandoc (2.2.1-3+b2) ... Setting up libfreetype6:arm64 (2.9.1-3+deb10u1) ... Setting up ssl-cert (1.0.39) ... Setting up shared-mime-info (1.10-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libwayland-cursor0:arm64 (1.16.0-1) ... Setting up xml-core (0.18+nmu1) ... Setting up bison (2:3.3.2.dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libcurl4:arm64 (7.64.0-4+deb10u1) ... Setting up libllvm7:arm64 (1:7.0.1-8) ... Setting up libx11-6:arm64 (2:1.6.7-1) ... Setting up libharfbuzz0b:arm64 (2.3.1-1) ... Setting up libclang1-7 (1:7.0.1-8) ... Setting up libboost-regex-dev:arm64 (1.67.0.1) ... Setting up libxcomposite1:arm64 (1:0.4.4-2) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libavahi-client3:arm64 (0.7-4+b1) ... Setting up libpython3-stdlib:arm64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libtinfo-dev:arm64 (6.1+20181013-2+deb10u2) ... Setting up libpaper1:arm64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u2) ... Setting up libpython2.7:arm64 (2.7.16-2+deb10u1) ... Setting up flex (2.6.4-6.2) ... Setting up liblapack3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libpython2.7-dev:arm64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up libharfbuzz-icu0:arm64 (2.3.1-1) ... 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Setting up python3-markupsafe (1.1.0-1) ... Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u2) ... Setting up python3-tz (2019.1-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.12.0-1) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libatk-bridge2.0-0:arm64 (2.30.0-5) ... Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up python3-roman (2.0.0-3) ... Setting up python3-jinja2 (2.10-2) ... Setting up python3-pygments (2.3.1+dfsg-1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up libxfixes3:arm64 (1:5.0.3-1) ... Setting up libgdk-pixbuf2.0-0:arm64 (2.38.1+dfsg-1) ... Setting up sphinx-common (1.8.4-1) ... Setting up libxinerama1:arm64 (2:1.1.4-2) ... Setting up postgresql-common (200+deb10u3) ... Adding user postgres to group ssl-cert Creating config file /etc/postgresql-common/createcluster.conf with new version Building PostgreSQL dictionaries from installed myspell/hunspell packages... Removing obsolete dictionary files: Created symlink /etc/systemd/system/multi-user.target.wants/postgresql.service -> /lib/systemd/system/postgresql.service. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up python3-idna (2.6-1) ... Setting up libxrandr2:arm64 (2:1.5.1-1) ... Setting up libxt6:arm64 (1:1.1.5-1+b3) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up libcups2:arm64 (2.2.10-6+deb10u3) ... Setting up python3-commonmark-bkrs (0.5.4+ds-2) ... Setting up libclang-common-7-dev (1:7.0.1-8) ... Setting up cmake (3.13.4-1) ... Setting up libpython2-dev:arm64 (2.7.16-1) ... Setting up libfontconfig1:arm64 (2.13.1-2) ... Setting up lsb-release (10.2019051400) ... Setting up python3-lib2to3 (3.7.3-1) ... 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Setting up imagemagick-6.q16 (8:6.9.10.23+dfsg-2.1+deb10u1) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up glib-networking:arm64 (2.58.0-2+deb10u2) ... 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I: Building the package I: Running cd /build/rdkit-201809.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package rdkit dpkg-buildpackage: info: source version 201809.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael Banck dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean pg_buildext checkcontrol dh clean --with python2 --buildsystem=cmake --parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/rdkit-201809.1+dfsg' find /build/rdkit-201809.1+dfsg -name "*.pyc" | xargs rm -f rm -f -r Projects/DbCLI/testData/bzr/ rdkit/Chem/inchi.py rm -f -r Docs/Book/_build Code/docs rdkit/docs Code/doxygen_sqlite3.db rm -f \ Code/ForceField/MMFF/test_data/MMFF94_dative_min.sdf \ Code/ForceField/MMFF/test_data/MMFF94_dative_min_from_SMILES.sdf \ Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min.sdf \ Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min_from_SMILES.sdf \ Code/ForceField/MMFF/test_data/MMFF94_reference.log \ Code/ForceField/MMFF/test_data/MMFF94s_reference.log \ Code/ForceField/MMFF/test_data/testMMFFForceField.log \ Code/GraphMol/Depictor/test_data/cis_trans_cpp.out.sdf \ Code/GraphMol/Depictor/test_data/collisions.out.sdf \ Code/GraphMol/Depictor/test_data/first_200.out.sdf \ Code/GraphMol/Depictor/test_data/test1.out.sdf \ Code/GraphMol/FileParsers/test_data/blah.sdf \ Code/GraphMol/FileParsers/test_data/cdk2_stereo.sdf \ Code/GraphMol/FileParsers/test_data/outNCI_few.sdf \ Code/GraphMol/FileParsers/test_data/outNCI_few.tdt \ Code/GraphMol/FileParsers/test_data/outNCI_first_200.props.sdf \ Code/GraphMol/FileParsers/test_data/outSmiles.csv \ Code/GraphMol/ForceFieldHelpers/UFF/test_data/Issue62.sdf \ Code/GraphMol/MolAlign/test_data/ref_e2_pyCrippenO3A.sdf \ Code/GraphMol/SLNParse/lex.yysln.cpp \ Code/GraphMol/SLNParse/sln.tab.cpp \ Code/GraphMol/SLNParse/sln.tab.hpp \ Code/GraphMol/SmilesParse/lex.yysmarts.cpp \ Code/GraphMol/SmilesParse/lex.yysmiles.cpp \ Code/GraphMol/SmilesParse/smarts.tab.cpp \ Code/GraphMol/SmilesParse/smarts.tab.hpp \ Code/GraphMol/SmilesParse/smiles.tab.cpp \ Code/GraphMol/SmilesParse/smiles.tab.hpp \ Code/GraphMol/Wrap/test_data/outNCI_few.sdf \ Code/GraphMol/Wrap/test_data/outSmiles.txt \ Code/RDGeneral/versions.cpp \ Docs/Book/Cartridge.rst \ Docs/Book/Cookbook.rst \ Docs/Book/Install.rst \ Docs/Book/Overview.rst \ rdkit/ML/Data/test_data/testgeneral.dat.pkl \ rdkit/ML/Data/test_data/testquant.qdat.pkl rm -f Code/RDGeneral/versions.h rdkit/sping/tests/testallps.ps dh_auto_clean pg_buildext clean /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit build-%v ### clean 11 ### make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' dh_clean -O--buildsystem=cmake -O--parallel debian/rules build dh build --with python2 --buildsystem=cmake --parallel dh_update_autotools_config -O--buildsystem=cmake -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/rdkit-201809.1+dfsg' dh_auto_configure -- \ -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON \ -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF \ -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON \ -DRDK_OPTIMIZE_NATIVE=OFF cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_OPTIMIZE_NATIVE=OFF .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found Catch2 source in /build/rdkit-201809.1+dfsg/External/catch/catch CATCH: /build/rdkit-201809.1+dfsg/External/catch/catch/single_include -- Found PythonInterp: /usr/bin/python (found version "2.7.16") -- Found PythonLibs: /usr/lib/aarch64-linux-gnu/libpython2.7.so (found version "2.7.16") Python Install directory /usr/lib/python2.7/dist-packages PYTHON Py_ENABLE_SHARED: 1 PYTHON USING LINK LINE: -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Eigen3 not found, disabling the Descriptors3D build. -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.67.0 -- Found the following Boost libraries: -- serialization == Using strict rotor definition == Updating Filters.cpp from pains file == Done updating pains files -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/rdkit-201809.1+dfsg' dh_auto_build cd obj-aarch64-linux-gnu && make -j8 make[2]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/rdkit-201809.1+dfsg -B/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/External/catch /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/External/catch /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/External/INCHI-API /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/External/INCHI-API /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= Scanning dependencies of target inchi_support Scanning dependencies of target catch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build make -f 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'/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= [ 0%] Built target inchi_support Scanning dependencies of target hc make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target RDGeneral make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o [ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/hc.c [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/hcdriver.c cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/types.cpp [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/utils.cpp [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/Dict.cpp [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDLog.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/LocaleSwitcher.cpp [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/versions.cpp [ 3%] Linking C shared library ../../../../lib/libRDKithc.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2018.09.1 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.so.1.2018.09.1 ../../../../lib/libRDKithc.so.1 ../../../../lib/libRDKithc.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target hc [ 3%] Linking CXX shared library ../../lib/libRDKitRDGeneral.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target RDGeneral make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDBoost /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDBoost /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Catalogs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Catalogs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Query /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Query /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= Scanning dependencies of target testRDValue Scanning dependencies of target Catalogs Scanning dependencies of target testDict make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target DataStructs Scanning dependencies of target EigenSolvers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Catalogs/Catalog.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/testRDValue.cpp Scanning dependencies of target RDBoost Scanning dependencies of target testMatrices make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDict.dir/testDict.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/testDict.cpp Scanning dependencies of target testQuery cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVect.cpp [ 4%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/c++ -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o [ 4%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDBoost && /usr/bin/c++ -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/testMatrices.cpp [ 4%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Query && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testQuery.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Query/test.cpp [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/SparseBitVect.cpp [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogParams.cpp [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogEntry.cpp [ 5%] Linking CXX shared library ../../lib/libRDKitCatalogs.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2018.09.1 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 6%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 [ 6%] Built target Catalogs make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread Scanning dependencies of target testMatCalc make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 7%] Built target EigenSolvers make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target SimDivPickers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC 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../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 7%] Built target RDBoost make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= Scanning dependencies of target rdBase make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDBoost/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap/RDBase.cpp [ 7%] Linking CXX executable testMatCalc cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 7%] Built target testMatCalc make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= Scanning dependencies of target Clustering make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 7%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/c++ -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/Clustering.cpp [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/ExplicitBitVect.cpp [ 8%] Linking CXX executable testQuery cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testQuery.dir/test.cpp.o -o testQuery ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 8%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 8%] Built target testQuery [ 8%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.cpp [ 8%] Linking CXX executable testMatrices cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 8%] Built target testMatrices [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Utils.cpp [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/base64.cpp [ 8%] Linking CXX executable testRDValue cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testRDValue.dir/testRDValue.cpp.o -o testRDValue ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 8%] Built target testRDValue [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.cpp [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteDistMat.cpp [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteValueVect.cpp [ 9%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libRDKithc.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/FPBReader.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 9%] Built target SimDivPickers [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/MultiFPBReader.cpp Scanning dependencies of target testSimDivPickers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 9%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/testPickers.cpp [ 9%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o ../../../../lib/libRDKithc.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 9%] Built target Clustering [ 9%] Linking CXX executable testDict cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDict.dir/testDict.cpp.o -o testDict ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 9%] Built target testDict [ 10%] Linking CXX executable testSimDivPickers cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread ../../lib/libRDKithc.so.1.2018.09.1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 10%] Built target testSimDivPickers [ 10%] Linking CXX shared library ../../lib/libRDKitDataStructs.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2018.09.1 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 10%] Built target DataStructs make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend Scanning dependencies of target testDataStructs make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build Scanning dependencies of target RDGeometryLib make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target testFPB make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build Scanning dependencies of target testMultiFPB make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target cDataStructs make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 11%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target rdMetricMatrixCalc make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/testDatastructs.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target rdSimDivPickers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build [ 12%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/testFPB.cpp [ 12%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/testMultiFPB.cpp [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o [ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/DataStructs.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/point.cpp [ 13%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp [ 13%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/MaxMinPicker.cpp [ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Transform2D.cpp [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/DiscreteValueVect.cpp [ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Transform3D.cpp [ 13%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 13%] Built target rdMetricMatrixCalc make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= Scanning dependencies of target InfoTheory make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 13%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory && /usr/bin/c++ -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoBitRanker.cpp [ 13%] Linking CXX executable testFPB cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFPB.dir/testFPB.cpp.o -o testFPB ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 13%] Built target testFPB [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/SparseIntVect.cpp [ 13%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp [ 14%] Linking CXX executable testMultiFPB cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultiFPB.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -o testMultiFPB ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 14%] Built target testMultiFPB [ 14%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp [ 14%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/UniformGrid3D.cpp [ 15%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target InfoTheory make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= Scanning dependencies of target rdInfoTheory make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 15%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp [ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_SparseBV.cpp [ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp [ 16%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../../lib/libRDKithc.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 16%] Built target rdSimDivPickers make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Data /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Data /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= Scanning dependencies of target cQuantize make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 16%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Data && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/Data/cQuantize.cpp [ 16%] Linking CXX executable testDataStructs cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 16%] Built target testDataStructs [ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_BitOps.cpp [ 16%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/GridUtils.cpp [ 17%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 17%] Built target RDGeometryLib make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testTransforms make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 17%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/testTransforms.cpp [ 17%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 17%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp [ 17%] Linking CXX shared module ../../../rdkit/rdBase.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 17%] Built target cQuantize make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= Scanning dependencies of target testGrid make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 17%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/testGrid.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 17%] Built target rdBase make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= Scanning dependencies of target rdGeometry make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 17%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap/Point.cpp [ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_FPB.cpp [ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_Utils.cpp [ 19%] Linking CXX executable testTransforms cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 19%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Built target testTransforms make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= Scanning dependencies of target Alignment make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DAlignment_EXPORTS -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/AlignPoints.cpp [ 19%] Linking CXX executable testGrid cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target GraphMol make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Built target testGrid make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Atom.cpp Scanning dependencies of target ChemicalFeatures make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures && /usr/bin/c++ -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.cpp [ 19%] Linking CXX shared library ../../../lib/libRDKitAlignment.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2018.09.1 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Built target Alignment make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target testAlignment make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/testAlignment.cpp [ 19%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Built target ChemicalFeatures make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target rdAlignment make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap/rdAlignment.cpp [ 19%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o ../../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target testChemicalFeatures make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Built target rdInfoTheory [ 19%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures && /usr/bin/c++ -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/testChemicalFeatures.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryAtom.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryBond.cpp [ 20%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap/UniformGrid3D.cpp [ 20%] Linking CXX executable testChemicalFeatures cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1 [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Bond.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 20%] Built target testChemicalFeatures [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.cpp [ 20%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 20%] Linking CXX executable testAlignment cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 20%] Built target testAlignment [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FindRings.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 20%] Built target cDataStructs [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RWMol.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PeriodicTable.cpp [ 21%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 21%] Built target rdAlignment [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/atomic_data.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolPickler.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Canon.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/AtomIterators.cpp [ 23%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap/rdGeometry.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/BondIterators.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Aromaticity.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Kekulize.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDiscriminators.cpp [ 23%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 23%] Built target rdGeometry [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ConjugHybrid.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/AddHs.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Matrices.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Chirality.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RingInfo.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Renumber.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/AdjustQuery.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StereoGroup.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/new_canon.cpp [ 25%] Linking CXX shared library ../../lib/libRDKitGraphMol.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2018.09.1 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 25%] Built target GraphMol make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target Trajectory make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build Scanning dependencies of target PartialCharges make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target SubstructMatch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build Scanning dependencies of target SmilesParse make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target MolTransforms Scanning dependencies of target MolCatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target Subgraphs make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target MolInterchange make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 25%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.cpp [ 25%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o [ 25%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o [ 25%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Trajectory.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructMatch.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/MolTransforms.cpp [ 25%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParse.cpp [ 25%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp [ 25%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/Subgraphs.cpp [ 25%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolInterchange.dir/Parser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Parser.cpp [ 25%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.cpp [ 26%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.cpp [ 26%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.cpp [ 26%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2018.09.1 CMakeFiles/Trajectory.dir/Trajectory.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 26%] Built target Trajectory make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target SLNParse make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 26%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParse.cpp [ 26%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 26%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 26%] Built target MolTransforms make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 26%] Built target MolCatalog Scanning dependencies of target rdqueries make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 26%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdqueries.cpp Scanning dependencies of target rdtrajectory make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 26%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Trajectory.cpp [ 27%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.cpp [ 27%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolInterchange.dir/Writer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Writer.cpp [ 27%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 27%] Built target PartialCharges make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target rdChemicalFeatures make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 27%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp [ 27%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 28%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Queries.cpp [ 28%] Built target Subgraphs make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= Scanning dependencies of target Optimizer make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 28%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/BFGSOpt.cpp [ 28%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructUtils.cpp [ 28%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/LinearSearch.cpp [ 28%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp [ 28%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.cpp [ 28%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdTrajectory.cpp [ 29%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2018.09.1 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 29%] Built target Optimizer make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target rdPartialCharges make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 30%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp [ 30%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 30%] Built target SubstructMatch make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolTransforms make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 30%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp [ 30%] Linking CXX shared library ../../../lib/libRDKitMolInterchange.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolInterchange.so.1 -o ../../../lib/libRDKitMolInterchange.so.1.2018.09.1 CMakeFiles/MolInterchange.dir/Parser.cpp.o CMakeFiles/MolInterchange.dir/Writer.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInterchange.so.1.2018.09.1 ../../../lib/libRDKitMolInterchange.so.1 ../../../lib/libRDKitMolInterchange.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 30%] Built target MolInterchange make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target ShapeHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 30%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp [ 31%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNAttribs.cpp [ 31%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 31%] Built target rdtrajectory make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolInterchange make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make 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CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap/rdMolInterchange.cpp [ 31%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp [ 31%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 31%] Built target rdPartialCharges make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= Scanning dependencies of target testOptimizer make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 31%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/testOptimizer.cpp [ 31%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 31%] Built target rdChemicalFeatures make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= Scanning dependencies of target ForceField make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 32%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.cpp [ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.cpp [ 33%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 33%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 [ 33%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/sln.tab.cpp /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 33%] Built target ShapeHelpers make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= Scanning dependencies of target Depictor make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 33%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 33%] Built target rdqueries make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target rdShapeHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 33%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp [ 33%] Linking CXX executable testOptimizer cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 33%] Built target testOptimizer [ 33%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.cpp [ 33%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 [ 33%] Linking CXX shared module ../../../../rdkit/Chem/rdMolInterchange.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolInterchange.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolInterchange.so CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o ../../../../lib/libRDKitMolInterchange.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 33%] Built target rdMolInterchange [ 34%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/DepictUtils.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 34%] Built target rdMolTransforms [ 34%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/lex.yysln.cpp sln.yy: In function 'void yysln_error(const char*, std::vector*, bool, void*, const char*)': sln.yy:60:43: warning: unused parameter 'ms' [-Wunused-parameter] sln.yy:60:51: warning: unused parameter 'doQ' [-Wunused-parameter] sln.yy:61:13: warning: unused parameter 'scanner' [-Wunused-parameter] [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleBend.cpp /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void yy_fatal_error(const char*, yyscan_t)': /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2585:58: warning: unused parameter 'yyscanner' [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void* yysln_alloc(yy_size_t, yyscan_t)': /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2917:47: warning: unused parameter 'yyscanner' [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void* yysln_realloc(void*, yy_size_t, yyscan_t)': /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2922:62: warning: unused parameter 'yyscanner' [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void yysln_free(void*, yyscan_t)': /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2934:40: warning: unused parameter 'yyscanner' [-Wunused-parameter] [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/BondStretch.cpp In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h:14, from /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h:36, from /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13: /build/rdkit-201809.1+dfsg/Code/Geometry/point.h: In function 'boost::python::tuple RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)': /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:31: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:43: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:31: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:43: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:31: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:43: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:31: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:43: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Nonbonded.cpp [ 34%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2018.09.1 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 34%] Built target SLNParse [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionAngle.cpp [ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/CXSmilesOps.cpp [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/DistanceConstraint.cpp [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.cpp [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionConstraint.cpp [ 35%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 35%] Built target rdShapeHelpers [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.cpp [ 35%] Linking CXX shared library ../../../lib/libRDKitDepictor.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2018.09.1 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 35%] Built target Depictor [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Params.cpp [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.cpp [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.cpp [ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smarts.tab.cpp [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.cpp [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/OopBend.cpp [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.cpp [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.cpp [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/DistanceConstraint.cpp [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.cpp smarts.yy: In function 'void yysmarts_error(const char*, std::vector*, RDKit::Atom*&, RDKit::Bond*&, void*, int, const char*)': smarts.yy:24:29: warning: unused parameter 'input' [-Wunused-parameter] smarts.yy:25:46: warning: unused parameter 'ms' [-Wunused-parameter] smarts.yy:26:31: warning: unused parameter 'lastAtom' [-Wunused-parameter] smarts.yy:27:31: warning: unused parameter 'lastBond' [-Wunused-parameter] smarts.yy:28:9: warning: unused parameter 'scanner' [-Wunused-parameter] smarts.yy:28:21: warning: unused parameter 'start_token' [-Wunused-parameter] [ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smiles.tab.cpp [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionConstraint.cpp [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.cpp [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.cpp [ 38%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/lex.yysmarts.cpp [ 38%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/lex.yysmiles.cpp smiles.yy: In function 'void yysmiles_error(const char*, std::vector*, RDKit::Atom*&, RDKit::Bond*&, std::__cxx11::list*, void*, int, const char*)': smiles.yy:38:29: warning: unused parameter 'input' [-Wunused-parameter] smiles.yy:40:31: warning: unused parameter 'lastAtom' [-Wunused-parameter] smiles.yy:41:31: warning: unused parameter 'lastBond' [-Wunused-parameter] smiles.yy:42:42: warning: unused parameter 'branchPoints' [-Wunused-parameter] smiles.yy:43:9: warning: unused parameter 'scanner' [-Wunused-parameter] smiles.yy:43:21: warning: unused parameter 'start_token' [-Wunused-parameter] smiles.yy: In function 'void yysmiles_error(const char*, std::vector*, std::__cxx11::list*, void*, int, const char*)': smiles.yy:50:29: warning: unused parameter 'input' [-Wunused-parameter] smiles.yy:52:42: warning: unused parameter 'branchPoints' [-Wunused-parameter] smiles.yy:53:9: warning: unused parameter 'scanner' [-Wunused-parameter] smiles.yy:53:21: warning: unused parameter 'start_token' [-Wunused-parameter] [ 38%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target SmilesParse make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolMemTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build Scanning dependencies of target graphmoltestCanon make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target test-valgrind make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build Scanning dependencies of target graphmolqueryTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target graphmolIterTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target graphmolcpTest [ 38%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/memtest1.cpp Scanning dependencies of target FileParsers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 40%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/test-valgrind.cpp [ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o [ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/querytest.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testCanon.cpp [ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/cptest.cpp [ 41%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/itertest.cpp [ 41%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/Mol2FileParser.cpp [ 41%] Linking CXX shared library ../../lib/libRDKitForceField.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2018.09.1 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 41%] Built target ForceField make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target ChemTransforms make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 41%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.cpp [ 41%] Linking CXX executable test-valgrind cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1 [ 41%] Linking CXX executable graphmoltestCanon cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -o test-valgrind ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -o graphmoltestCanon ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 41%] Built target graphmoltestCanon make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend [ 41%] Built target test-valgrind make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= Scanning dependencies of target smiTest2 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target smaTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 42%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/test2.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smiTest2.dir/test2.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/test2.cpp [ 42%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smatest.cpp [ 42%] Linking CXX executable graphmolMemTest1 cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target graphmolMemTest1 make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target FilterCatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 43%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Filters.cpp [ 43%] Linking CXX executable graphmolIterTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 43%] Linking CXX executable graphmolcpTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 43%] Built target graphmolIterTest make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target Fingerprints make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make 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-Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target graphmolcpTest make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= Scanning dependencies of target testSubgraphs1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/test1.cpp [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileParser.cpp [ 44%] Linking CXX executable smiTest2 cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smiTest2.dir/test2.cpp.o -o smiTest2 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target smiTest2 make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= Scanning dependencies of target testSubgraphs2 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make 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CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/test2.cpp [ 44%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalog.cpp [ 44%] Linking CXX executable graphmolqueryTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.cpp [ 44%] Built target graphmolqueryTest make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target FragCatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp [ 44%] Linking CXX executable testSubgraphs1 cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Built target testSubgraphs1 make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target testPartialCharges make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/test1.cpp [ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/PatternFingerprints.cpp [ 45%] Linking CXX executable testSubgraphs2 cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target testSubgraphs2 make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target MolChemicalFeatures make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 45%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp [ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.cpp [ 46%] Linking CXX executable testPartialCharges cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 46%] Built target testPartialCharges make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target ReducedGraphs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 46%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp [ 46%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp [ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.cpp [ 47%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 47%] Built target ChemTransforms make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target testSLNParse make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 47%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/test.cpp [ 47%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp [ 47%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp [ 47%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp [ 47%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 47%] Built target ReducedGraphs make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target rdSLNParse make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 47%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp [ 47%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.cpp [ 47%] Linking CXX executable smaTest1 cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 47%] Built target smaTest1 [ 47%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o [ 47%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.cpp [ 47%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatParams.cpp [ 47%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileStereochem.cpp [ 48%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 48%] Built target rdSLNParse make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= Scanning dependencies of target rdchem make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 49%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdchem.cpp [ 49%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp [ 49%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MACCS.cpp [ 49%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.cpp [ 49%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp [ 50%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 50%] Built target MolChemicalFeatures make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target ForceFieldHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 50%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp [ 50%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileWriter.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of 'SparseBitVect* RDKit::FingerprintGenerator::getSparseFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:329:61: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:230:24: warning: comparison of integer expressions of different signedness: 'int' and 'const value_type' {aka 'const unsigned int'} [-Wsign-compare] if (val.second >= dp_fingerprintArguments->d_countBounds[i]) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of 'SparseBitVect* RDKit::FingerprintGenerator::getSparseFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:337:61: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:230:24: warning: comparison of integer expressions of different signedness: 'int' and 'const value_type' {aka 'const unsigned int'} [-Wsign-compare] /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of 'ExplicitBitVect* RDKit::FingerprintGenerator::getFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:360:61: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:293:24: warning: comparison of integer expressions of different signedness: 'int' and 'const value_type' {aka 'const unsigned int'} [-Wsign-compare] if (val.second >= dp_fingerprintArguments->d_countBounds[i]) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of 'ExplicitBitVect* RDKit::FingerprintGenerator::getFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:367:61: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:293:24: warning: comparison of integer expressions of different signedness: 'int' and 'const value_type' {aka 'const unsigned int'} [-Wsign-compare] [ 50%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 51%] Linking CXX executable testSLNParse cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse ../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 51%] Built target FilterCatalog make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolChemicalFeatures make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 51%] Built target testSLNParse make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend [ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target testReducedGraphs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 51%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/test1.cpp [ 51%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp [ 51%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 52%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 52%] Built target FragCatalog make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target rdReducedGraphs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 52%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp [ 52%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp [ 52%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Table.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Table.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of 'std::vector*> RDKit::AtomPair::AtomPairEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:138:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:139:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:140:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of 'std::vector*> RDKit::AtomPair::AtomPairEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:138:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:139:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:140:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of 'OutputType RDKit::AtomPair::AtomPairAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:83:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:86:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of 'OutputType RDKit::AtomPair::AtomPairAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:83:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:86:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::MorganFingerprint::getMorganGenerator(unsigned int, bool, bool, bool, bool, RDKit::AtomInvariantsGenerator*, RDKit::BondInvariantsGenerator*, uint32_t, std::vector, bool, bool) [with OutputType = unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:409:57: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:376:43: warning: unused parameter 'ownsBondInvGen' [-Wunused-parameter] const bool ownsAtomInvGen, const bool ownsBondInvGen) { ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::MorganFingerprint::getMorganGenerator(unsigned int, bool, bool, bool, bool, RDKit::AtomInvariantsGenerator*, RDKit::BondInvariantsGenerator*, uint32_t, std::vector, bool, bool) [with OutputType = long unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:418:57: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:376:43: warning: unused parameter 'ownsBondInvGen' [-Wunused-parameter] [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp [ 53%] Linking CXX executable testReducedGraphs cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testReducedGraphs.dir/test1.cpp.o -o testReducedGraphs ../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 53%] Built target testReducedGraphs [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SDMolSupplier.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'std::vector*> RDKit::MorganFingerprint::MorganEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:159:39: warning: unused parameter 'ignoreAtoms' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:159:62: warning: unused parameter 'confId' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:160:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:163:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'std::vector*> RDKit::MorganFingerprint::MorganEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:159:39: warning: unused parameter 'ignoreAtoms' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:159:62: warning: unused parameter 'confId' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:160:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:163:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 53%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'OutputType RDKit::MorganFingerprint::MorganAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:137:39: warning: unused parameter 'arguments' [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:138:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:139:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:140:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'OutputType RDKit::MorganFingerprint::MorganAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:137:39: warning: unused parameter 'arguments' [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:138:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:139:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:140:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 53%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp [ 54%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp [ 54%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o ../../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 54%] Built target rdReducedGraphs [ 54%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of 'std::vector*> RDKit::RDKitFP::RDKitFPEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:39: warning: unused parameter 'ignoreAtoms' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:62: warning: unused parameter 'confId' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:115:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:117:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:118:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of 'std::vector*> RDKit::RDKitFP::RDKitFPEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:39: warning: unused parameter 'ignoreAtoms' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:62: warning: unused parameter 'confId' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:115:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:117:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:118:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 54%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of 'OutputType RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:91:39: warning: unused parameter 'arguments' [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:92:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:93:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of 'OutputType RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:91:39: warning: unused parameter 'arguments' [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:92:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:93:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SDWriter.cpp [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp [ 54%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp [ 54%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Atom.cpp [ 54%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:11: /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of 'RDKit::TopologicalTorsion::TopologicalTorsionArguments::TopologicalTorsionArguments(bool, uint32_t, bool, std::vector, uint32_t) [with OutputType = long unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:161:7: required from 'RDKit::FingerprintGenerator* RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(bool, uint32_t, RDKit::AtomInvariantsGenerator*, bool, std::vector, uint32_t, bool) [with OutputType = long unsigned int; uint32_t = unsigned int]' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:183:58: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:26:18: warning: 'RDKit::TopologicalTorsion::TopologicalTorsionArguments::d_torsionAtomCount' will be initialized after [-Wreorder] const uint32_t d_torsionAtomCount; ^~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:27:76: warning: base 'RDKit::FingerprintArguments' [-Wreorder] FingerprintArguments(countSimulation, countBounds, fpSize){}; ^ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:21:1: warning: when initialized here [-Wreorder] TopologicalTorsionArguments::TopologicalTorsionArguments( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of 'std::vector*> RDKit::TopologicalTorsion::TopologicalTorsionEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:58:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:61:62: warning: unused parameter 'confId' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:62:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:64:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of 'OutputType RDKit::TopologicalTorsion::TopologicalTorsionAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:44:39: warning: unused parameter 'arguments' [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:45:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:46:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:47:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:47:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SmilesWriter.cpp [ 54%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TDTMolSupplier.cpp [ 54%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2018.09.1 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 54%] Built target Fingerprints make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= Scanning dependencies of target rdFingerprintGenerator make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 54%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TDTWriter.cpp [ 55%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp [ 55%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TplFileParser.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: In function 'const std::vector RDKit::FingerprintWrapper::convertPyArgumentsForBulk(const boost::python::list&)': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:190:25: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] for (int i = 0; i < len; i++) { ~~^~~~~ [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TplFileWriter.cpp In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:17: /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::MorganWrapper::getMorganGenerator(unsigned int, bool, bool, bool, bool, bool, boost::python::api::object&, uint32_t, boost::python::api::object&, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp:121:63: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp:24:50: warning: unused parameter 'includeRingMembership' [-Wunused-parameter] const bool onlyNonzeroInvariants, const bool includeRingMembership, ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:18: /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::RDKitFPWrapper::getRDKitFPGenerator(unsigned int, unsigned int, bool, bool, bool, bool, boost::python::api::object&, uint32_t, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp:92:63: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp:27:28: warning: unused variable 'bondInvariantsGenerator' [-Wunused-variable] BondInvariantsGenerator *bondInvariantsGenerator = nullptr; ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:19: /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::TopologicalTorsionWrapper::getTopologicalTorsionFPGenerator(bool, uint32_t, bool, boost::python::api::object&, uint32_t, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp:75:63: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp:26:28: warning: unused variable 'bondInvariantsGenerator' [-Wunused-variable] BondInvariantsGenerator *bondInvariantsGenerator = nullptr; ^~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBParser.cpp [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBWriter.cpp [ 55%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 55%] Built target ForceFieldHelpers make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= Scanning dependencies of target SubstructLibrary make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 55%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBSupplier.cpp [ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MaeMolSupplier.cpp [ 57%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 57%] Built target rdMolChemicalFeatures make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeometry make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 57%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/DistGeomUtils.cpp [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ProximityBonds.cpp [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.cpp [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceWriters.cpp [ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Bond.cpp [ 57%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 57%] Built target rdFingerprintGenerator make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target MolAlign make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 57%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/AlignMolecules.cpp [ 58%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 58%] Built target SubstructLibrary make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceField make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 59%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/Wrap/ForceField.cpp [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SVGParser.cpp make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceFieldHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp [ 59%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/TriangleSmooth.cpp [ 59%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/DistViolationContrib.cpp [ 59%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp [ 59%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/ChiralViolationContrib.cpp [ 59%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Mol.cpp [ 59%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Conformer.cpp [ 59%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2018.09.1 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 59%] Built target DistGeometry make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeomHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 59%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp [ 59%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lmaeparser ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 59%] Built target FileParsers make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target testDistGeom make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 59%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/testDistGeom.cpp [ 59%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2018.09.1 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 59%] Built target MolAlign make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeom make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 59%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom/Wrap && /usr/bin/c++ -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/Wrap/DistGeom.cpp [ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/RingInfo.cpp [ 60%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 60%] Built target rdForceFieldHelpers make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolMolOpsTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 60%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/molopstest.cpp [ 60%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.cpp [ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/EditableMol.cpp [ 60%] Linking CXX executable testDistGeom cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom ../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 60%] Built target testDistGeom make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 61%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/test1.cpp [ 61%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 61%] Built target rdForceField make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestChirality make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 61%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testChirality.cpp [ 61%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 61%] Built target DistGeom make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestPickler make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testPickler.cpp [ 62%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MonomerInfo.cpp [ 63%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 63%] Built target DistGeomHelpers make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color= Scanning dependencies of target molBundleTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 63%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testMolBundle.cpp [ 63%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp [ 63%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MolBundle.cpp make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color= Scanning dependencies of target resMolSupplierTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 63%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/resMolSupplierTest.cpp [ 63%] Linking CXX executable molBundleTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 63%] Built target molBundleTest make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestPicklerGlobalSetting make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 63%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testPicklerGlobalSettings.cpp [ 63%] Linking CXX executable graphmolTest1 cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 63%] Built target graphmolTest1 make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= Scanning dependencies of target hanoiTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 63%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/hanoitest.cpp make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg 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-I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/catch_tests.cpp [ 63%] Linking CXX executable graphmoltestPickler cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 63%] Built target graphmoltestPickler make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg 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-I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/testDepictor.cpp [ 64%] Linking CXX executable resMolSupplierTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target resMolSupplierTest make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg 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-DrdDepictor_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp [ 64%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 64%] Linking CXX executable graphmoltestPicklerGlobalSetting cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target rdchem make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= Scanning dependencies of target smiTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f 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CMakeFiles/smiTest1.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/test.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target graphmoltestPicklerGlobalSetting make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color= Scanning dependencies of target cxsmilesTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/cxsmiles_test.cpp [ 64%] Linking CXX executable graphmoltestChirality cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target graphmoltestChirality make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color= Scanning dependencies of target smiTestCatch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/catch_tests.cpp [ 64%] Linking CXX executable hanoiTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target hanoiTest make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= Scanning dependencies of target testMol2ToMol make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testMol2ToMol.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp: In function 'unsigned int RDDepict::Compute2DCoords(RDKit::ROMol&, bool, bool, boost::python::dict&, unsigned int, unsigned int, int, bool, double, bool)': /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:49:61: warning: '*((void*)& +40)' may be used uninitialized in this function [-Wmaybe-uninitialized] cMap[id] = python::extract(coordMap[id]); ^ [ 64%] Linking CXX executable testDepictor cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target testDepictor make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color= Scanning dependencies of target testExtendedStereoParsing make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp [ 64%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target rdDepictor make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= Scanning dependencies of target testMolWriter make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testMolWriter.cpp [ 64%] Linking CXX executable cxsmilesTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -o cxsmilesTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target cxsmilesTest make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color= Scanning dependencies of target testMolSupplier make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testMolSupplier.cpp [ 64%] Linking CXX executable testMol2ToMol cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target testMol2ToMol make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color= Scanning dependencies of target fileParsersCatchTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/catch_tests.cpp [ 65%] Linking CXX executable testExtendedStereoParsing cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testExtendedStereoParsing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic 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/build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= Scanning dependencies of target fileParsersTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/test1.cpp [ 65%] Linking CXX executable testMolWriter cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 65%] Built target testMolWriter make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= Scanning dependencies of target testTplParser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testTpls.cpp [ 66%] Linking CXX executable testMolSupplier cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Built target testMolSupplier make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color= Scanning dependencies of target testSequence make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testSequence.cpp [ 66%] Linking CXX executable testSequence cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSequence.dir/testSequence.cpp.o -o testSequence ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Built target testSequence make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= Scanning dependencies of target testSubstructMatch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/test1.cpp [ 66%] Linking CXX executable testTplParser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Built target testTplParser make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= Scanning dependencies of target Descriptors make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Crippen.cpp [ 66%] Linking CXX executable smiTest1 cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o -o smiTest1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 66%] Built target smiTest1 make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make 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Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/testChemTransforms.cpp [ 67%] Linking CXX executable graphmolMolOpsTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 67%] Built target graphmolMolOpsTest make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= Scanning dependencies of target filterCatalogTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 67%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp [ 67%] Linking CXX executable graphmolTestsCatch cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTestsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o -o graphmolTestsCatch ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 67%] Built target graphmolTestsCatch make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdfiltercatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 68%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp [ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors.cpp [ 68%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp [ 68%] Linking CXX executable filterCatalogTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1 [ 68%] Linking CXX executable smiTestCatch cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -o filterCatalogTest ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -o smiTestCatch ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 68%] Built target filterCatalogTest make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target testFragCatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 68%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/test1.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 68%] Built target smiTestCatch make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdfragcatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 68%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp [ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolSurf.cpp [ 68%] Linking CXX executable testSubstructMatch cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 68%] Built target testSubstructMatch make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target testFingerprints make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/test1.cpp [ 69%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp [ 69%] Linking CXX executable fileParsersCatchTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -o fileParsersCatchTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 69%] Built target fileParsersCatchTest make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color= Scanning dependencies of target testFingerprintGenerators make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp [ 69%] Linking CXX executable testFragCatalog cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 69%] Built target testFragCatalog make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testMolTransforms make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/test1.cpp [ 69%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.cpp In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/RDKitBase.h:21, from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:12: /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp: In function 'void testAtomPairNonSparseBitvector()': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:225:42: warning: comparison of integer expressions of different signedness: 'int' and '__gnu_cxx::__alloc_traits, unsigned int>::value_type' {aka 'unsigned int'} [-Wsign-compare] TEST_ASSERT(isSet == (it->second >= defaultCountBounds[i])); /build/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.h:152:9: note: in definition of macro 'TEST_ASSERT' if (!(expr)) { \ ^~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:242:42: warning: comparison of integer expressions of different signedness: 'int' and '__gnu_cxx::__alloc_traits, unsigned int>::value_type' {aka 'unsigned int'} [-Wsign-compare] TEST_ASSERT(isSet == (it->second >= defaultCountBounds[i])); /build/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.h:152:9: note: in definition of macro 'TEST_ASSERT' if (!(expr)) { \ ^~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp: In function 'void testBulkFP()': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:2388:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (int i = 0; i < results->size(); i++) { ~~^~~~~~~~~~~~~~~~~ [ 69%] Linking CXX executable testChemTransforms cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 69%] Built target testChemTransforms make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testMMFFForceFieldHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp [ 69%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp [ 69%] Linking CXX executable fileParsersTest1 cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lmaeparser ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 69%] Built target fileParsersTest1 make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testUFFForceFieldHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp [ 69%] Linking CXX executable testMolTransforms cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 69%] Built target testMolTransforms make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testCrystalForceField make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp [ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp [ 71%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp [ 71%] Linking CXX executable testCrystalForceField cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -o testCrystalForceField ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 71%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MQN.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 71%] Built target testCrystalForceField make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testDistGeomHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 71%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp [ 71%] Linking CXX executable testMMFFForceFieldHelpers cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 71%] Built target testMMFFForceFieldHelpers make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target rdDistGeom make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 72%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++ -DBOOST_PYTHON_MAX_ARITY=32 -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp [ 72%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Property.cpp [ 72%] Linking CXX executable testFingerprintGenerators cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 72%] Built target testFingerprintGenerators make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target testFeatures make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 72%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp [ 72%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp [ 72%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 72%] Linking CXX executable testUFFForceFieldHelpers cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 72%] Built target rdfiltercatalog make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testShapeHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 72%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp [ 72%] Built target testUFFForceFieldHelpers make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target testMolCatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 72%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/test1.cpp [ 72%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR2D.cpp [ 72%] Linking CXX executable testFingerprints cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFingerprints.dir/test1.cpp.o -o testFingerprints ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 72%] Built target testFingerprints make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolCatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp [ 73%] Linking CXX executable testShapeHelpers cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1 In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h:14, from /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h:36, from /build/rdkit-201809.1+dfsg/Code/GraphMol/GraphMol.h:19, from /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:17: /build/rdkit-201809.1+dfsg/Code/Geometry/point.h: In function 'RDKit::INT_VECT RDKit::EmbedMultipleConfs(RDKit::ROMol&, unsigned int, unsigned int, int, bool, bool, double, bool, unsigned int, double, boost::python::dict&, double, bool, bool, int, bool, bool, bool)': /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:85:15: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] x = other.x; ~~~~~~^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread /build/rdkit-201809.1+dfsg/Code/Geometry/point.h: In function 'int RDKit::EmbedMolecule(RDKit::ROMol&, unsigned int, int, bool, bool, double, bool, unsigned int, boost::python::dict&, double, bool, bool, bool, bool, bool)': /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:85:15: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] x = other.x; ~~~~~~^ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target testShapeHelpers make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= Scanning dependencies of target FMCS make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/FMCS.cpp [ 73%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong 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../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target rdfragcatalog make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= Scanning dependencies of target MMPA make[4]: Leaving directory 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-fPIC -fPIC -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.cpp [ 73%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp [ 73%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp [ 73%] Linking CXX executable testFeatures cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target testFeatures make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Trajectory 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-O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/trajectoryTest.cpp [ 73%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDistGeom.so 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'/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp [ 73%] Linking CXX executable testMolCatalog cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target testMolCatalog make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= Scanning dependencies of target rdSubstructLibrary make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp [ 73%] Linking CXX executable testDistGeomHelpers cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Built target testDistGeomHelpers make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/DependInfo.cmake --color= Scanning dependencies of target molInterchangeTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 73%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/test1.cpp [ 74%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.cpp [ 74%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp [ 74%] Linking CXX shared library ../../../lib/libRDKitMMPA.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2018.09.1 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target MMPA make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= [ 74%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 Scanning dependencies of target rdmolfiles make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 74%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdmolfiles.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Built target rdMolCatalog make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/UFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/UFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testUFFForceField make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 74%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/UFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/testUFFForceField.cpp [ 75%] Linking CXX executable trajectoryTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -o trajectoryTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 75%] Built target trajectoryTest make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testMMFFForceField [ 75%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Seed.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 76%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/MMFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/testMMFFForceField.cpp [ 76%] Linking CXX executable substructLibraryTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 76%] Built target substructLibraryTest make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg 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-I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA_UnitTest.cpp [ 76%] Linking CXX executable molInterchangeTest1 cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/molInterchangeTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro 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-Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2018.09.1 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target Descriptors make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= Scanning dependencies of target ChemReactions make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 78%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.cpp [ 78%] Linking CXX executable testMMPA cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -o testMMPA ../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread [ 78%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS 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'/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= Scanning dependencies of target testDescriptors make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/test.cpp [ 78%] Linking CXX executable testUFFForceField cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 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make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp [ 78%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/MDLParser.cpp [ 78%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o ../../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 78%] Built target rdMMPA make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolDescriptors make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 78%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD 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testAUTOCORR2D ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 78%] Built target testAUTOCORR2D make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolAlign make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 78%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp [ 78%] Linking CXX executable testMMFFForceField cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -o testMMFFForceField ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 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-I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/MolHash.cpp [ 79%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp [ 79%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/DaylightParser.cpp [ 79%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.cpp [ 79%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/HashToString.cpp [ 79%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionPickler.cpp [ 80%] Linking CXX executable testMolAlign cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1 [ 80%] Linking CXX shared library ../../../lib/libRDKitMolHash.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2018.09.1 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target MolHash make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target testMolAlign make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color= Scanning dependencies of target StructChecker make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target testMolHash make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build [ 80%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructChecker.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 80%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/testMolHash.cpp [ 80%] Linking CXX shared library ../../../lib/libRDKitFMCS.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2018.09.1 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread [ 80%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MaeMolSupplier.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target FMCS make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolHash make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 80%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp [ 80%] Linking CXX executable testDescriptors cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target testDescriptors make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= Scanning dependencies of target RGroupDecomposition make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 80%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h:14, from /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h:36, from /build/rdkit-201809.1+dfsg/Code/GraphMol/GraphMol.h:19, from /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12: /build/rdkit-201809.1+dfsg/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)': /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:85:15: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] x = other.x; ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:86:15: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] y = other.y; ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:87:15: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] z = other.z; ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributions(boost::python::api::object, boost::python::api::object)': /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:85:15: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] x = other.x; ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:86:15: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] y = other.y; ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:87:15: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] z = other.z; ~~~~~~^ [ 80%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 80%] Built target rdMolAlign make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= Scanning dependencies of target testFMCS make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 80%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/testFMCS_Unit.cpp [ 80%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp [ 80%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionWriter.cpp [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o ../../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 81%] Built target rdMolHash make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= Scanning dependencies of target rdFMCS make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 81%] Linking CXX executable testMolHash cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o -o testMolHash ../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread [ 81%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 81%] Built target testMolHash make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= Scanning dependencies of target FMCStest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Test && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector >&)': /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:354:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d", &n); ~~~~~~^~~~~~~~~~~~~~ [ 82%] Linking CXX executable testFMCS cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target testFMCS [ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionDepict.cpp [ 83%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SDMolSupplier.cpp [ 84%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp [ 84%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructureFlags.cpp [ 84%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 84%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionUtils.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Built target RGroupDecomposition make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color= Scanning dependencies of target testRGroupDecomp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp [ 84%] Linking CXX executable FMCStest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Built target FMCStest make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= [ 84%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o Scanning dependencies of target rdRGroupDecomposition cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/MoleculeParser.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 84%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Utilites.cpp [ 85%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 85%] Built target rdMolDescriptors [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Pattern.cpp [ 85%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 85%] Built target rdFMCS [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Stereo.cpp [ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.cpp [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/TDTMolSupplier.cpp [ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/PreprocessRxn.cpp [ 85%] Linking CXX executable testRGroupDecomp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -o testRGroupDecomp ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 85%] Built target testRGroupDecomp [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SmilesMolSupplier.cpp [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StripSmallFragments.cpp [ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.cpp [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/ReCharge.cpp [ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Tautomer.cpp [ 86%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o ../../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 86%] Built target rdRGroupDecomposition [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp [ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SmilesWriter.cpp [ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SDWriter.cpp [ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/TDTWriter.cpp [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp [ 87%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2018.09.1 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/PDBWriter.cpp cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target StructChecker make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color= Scanning dependencies of target testStructChecker make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/testStructChecker.cpp [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color= Scanning dependencies of target rdStructChecker make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap/structchecker.cpp [ 88%] Linking CXX executable testStructChecker cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -o testStructChecker ../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target testStructChecker [ 88%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target rdmolfiles [ 88%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2018.09.1 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target ChemReactions make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color= Scanning dependencies of target testEnumeration make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target testReaction Scanning dependencies of target rdChemReactions make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build Scanning dependencies of target rxnTestCatch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Scanning dependencies of target testReactionFingerprints make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 88%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o Scanning dependencies of target MolDraw2D cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/testReaction.cpp [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/catch_tests.cpp Scanning dependencies of target MolStandardize make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp [ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.cpp [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/MolStandardize.cpp [ 90%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o ../../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 90%] Built target rdStructChecker [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Metal.cpp [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Normalize.cpp [ 90%] Linking CXX executable testReactionFingerprints cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 90%] Built target testReactionFingerprints [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Validate.cpp [ 90%] Linking CXX executable testEnumeration cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -o testEnumeration ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Charge.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 90%] Built target testEnumeration [ 90%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS 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Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.cpp [ 91%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.cpp [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.cpp [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.cpp [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.cpp [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.cpp [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp [ 93%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -lboost_serialization cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Built target MolDraw2D make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D 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'/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/test1.cpp [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/rxn_test1.cpp make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolDraw2D make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp [ 93%] Linking CXX executable rxnTestCatch cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -o rxnTestCatch ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend [ 93%] Built target rxnTestCatch make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= Scanning dependencies of target rdmolops make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdmolops.cpp [ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MolOps.cpp [ 94%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o ../../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 94%] Built target rdChemReactions [ 94%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolStandardize.so.1 -o ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -lboost_serialization cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitMolStandardize.so.1 ../../../lib/libRDKitMolStandardize.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 94%] Built target MolStandardize make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/DependInfo.cmake --color= Scanning dependencies of target molChargeTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build Scanning dependencies of target molTautomerTest make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testTautomer.cpp [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molChargeTest.dir/testCharge.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testCharge.cpp make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake --color= Scanning dependencies of target molValidateTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molValidateTest.dir/testValidate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testValidate.cpp [ 94%] Linking CXX executable moldraw2DRxnTest1 cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -o moldraw2DRxnTest1 ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 94%] Built target moldraw2DRxnTest1 make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color= Scanning dependencies of target molNormalizeTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testNormalize.cpp [ 95%] Linking CXX executable molNormalizeTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molNormalizeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -o molNormalizeTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Built target molNormalizeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake --color= Scanning dependencies of target molFragmentTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testFragment.cpp [ 96%] Linking CXX executable molChargeTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molChargeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molChargeTest.dir/testCharge.cpp.o -o molChargeTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target molChargeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color= Scanning dependencies of target molStandardizeTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molStandardizeTest.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/test1.cpp [ 96%] Linking CXX executable molValidateTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molValidateTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molValidateTest.dir/testValidate.cpp.o -o molValidateTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread [ 97%] Linking CXX executable moldraw2DTest1 cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1 ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 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/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color= Scanning dependencies of target molStandardizeSmallTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/test2.cpp [ 97%] Built target moldraw2DTest1 make 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directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 97%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/rdMolStandardize.cpp [ 97%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization [ 97%] Linking CXX executable molFragmentTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molFragmentTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -o molFragmentTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target rdMolDraw2D [ 97%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Validate.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target molFragmentTest [ 97%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Charge.cpp [ 97%] Linking CXX executable molStandardizeSmallTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeSmallTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -o molStandardizeSmallTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target molStandardizeSmallTest [ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp [ 98%] Linking CXX executable molStandardizeTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molStandardizeTest.dir/test1.cpp.o -o molStandardizeTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target molStandardizeTest [ 98%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp [ 99%] Linking CXX executable testReaction cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testReaction.dir/testReaction.cpp.o -o testReaction ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Metal.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target testReaction [ 99%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o ../../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target rdMolStandardize [ 99%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 99%] Built target rdmolops [100%] Linking CXX executable molTautomerTest cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTautomerTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -o molTautomerTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [100%] Built target molTautomerTest make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' STATIC_LINK=0 RDKIT_LIBDIR=/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu//lib pg_buildext build /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit build-%v ### build 11 ### make[2]: Entering directory '/build/rdkit-201809.1+dfsg/build-11' gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o rdkit_io.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_io.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o mol_op.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'mol_murckoscaffold': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:253:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] CROMol scaffold = MolMurckoScaffold(mol); ^~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'mol_hash': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:273:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *res = pnstrdup(str, len); ^~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'mol_adjust_query_properties': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:286:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *data = PG_GETARG_CSTRING(1); ^~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:290:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] Mol *res = deconstructROMol(adj); ^~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'mol_to_svg': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:305:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *legend = PG_GETARG_CSTRING(1); ^~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:329:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *res = pnstrdup(str, strlen(str)); ^~~~ In file included from /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:34: /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol2s_transition': /usr/include/postgresql/11/server/fmgr.h:238:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion] #define PG_GETARG_DATUM(n) (fcinfo->arg[n]) ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:381:18: note: in expansion of macro 'PG_GETARG_DATUM' CROMol mol = PG_GETARG_DATUM(1); ^~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:397:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] text *ts = (text *)palloc(ts_size); // new return value ^~~~ In file included from /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:34: /usr/include/postgresql/11/server/fmgr.h:238:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion] #define PG_GETARG_DATUM(n) (fcinfo->arg[n]) ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:409:18: note: in expansion of macro 'PG_GETARG_DATUM' CROMol mol = PG_GETARG_DATUM(1); ^~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:417:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *smiles = makeMolText(mol, &len, false); ^~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mols': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:455:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int32 ts_size = VARHDRSZ + strlen(str); ^~~~~ In file included from /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:34: /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition': /usr/include/postgresql/11/server/fmgr.h:238:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion] #define PG_GETARG_DATUM(n) (fcinfo->arg[n]) ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:477:18: note: in expansion of macro 'PG_GETARG_DATUM' CROMol mol = PG_GETARG_DATUM(1); ^~~~~~~~~~~~~~~ In file included from /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:33: /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:484:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] PG_RETURN_INT32((int32)lst); ^ /usr/include/postgresql/11/server/postgres.h:464:36: note: in definition of macro 'Int32GetDatum' #define Int32GetDatum(X) ((Datum) (X)) ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:484:5: note: in expansion of macro 'PG_RETURN_INT32' PG_RETURN_INT32((int32)lst); ^~~~~~~~~~~~~~~ In file included from /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:34: /usr/include/postgresql/11/server/fmgr.h:238:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion] #define PG_GETARG_DATUM(n) (fcinfo->arg[n]) ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:488:18: note: in expansion of macro 'PG_GETARG_DATUM' CROMol mol = PG_GETARG_DATUM(1); ^~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o bfp_op.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_op.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o sfp_op.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/sfp_op.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o rxn_op.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment] // /* keep compiler quiet - no extra ; */ \ ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c: In function 'reaction_to_svg': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c:179:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] bool highlightByReactants = PG_GETARG_BOOL(1); ^~~~ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o rdkit_gist.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldistsign': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:240:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *as = (uint8 *)VARDATA(a); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: implicit declaration of function 'floor' [-Wimplicit-function-declaration] return (int) floor(10000*soergeldistsign(a, b)); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: incompatible implicit declaration of built-in function 'floor' /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:275:16: note: include '' or provide a declaration of 'floor' /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:42:1: +#include /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:275:16: return (int) floor(10000*soergeldistsign(a, b)); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable 'd' [-Wunused-variable] double d; ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function 'gmol_consistent': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:526:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:538:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:570:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function 'rdkit_consistent': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:658:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int siglen = SIGLEN(query); ^~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:673:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function 'gsfp_consistent': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:708:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int sum, overlapSum, overlapN; ^~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:714:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int nKey = (ISALLTRUE(key)) ? ^~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function 'greaction_consistent': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:787:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:804:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:832:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ At top level: /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:646:1: warning: 'rdkit_consistent' defined but not used [-Wunused-function] rdkit_consistent(GISTENTRY *entry, StrategyNumber strategy, bytea *key, bytea *query) ^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:261:1: warning: 'soergeldist' defined but not used [-Wunused-function] soergeldist(bytea *a, bytea *b) { ^~~~~~~~~~~ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o bfp_gist.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gist.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gist.c: In function 'merge_key': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gist.c:699:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int siglen = GBFP_INNER_SIGLEN(result); ^~~ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o bfp_gin.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gin.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o low_gist.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c: In function 'gslfp_consistent': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function 'searchSfpCache' [-Wimplicit-function-declaration] fcinfo->flinfo->fn_extra = searchSfpCache( ^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment to 'void *' from 'int' makes pointer from integer without a cast [-Wint-conversion] fcinfo->flinfo->fn_extra = searchSfpCache( ^ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o guc.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/guc.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o cache.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c: In function 'createCache': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c:312:17: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] methodsOrig = ctx->methods; ^ g++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-function -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o adapter.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/adapter.cpp gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o bitstring.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ g++ -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -shared -o rdkit.so rdkit_io.o mol_op.o bfp_op.o sfp_op.o rxn_op.o rdkit_gist.o bfp_gist.o bfp_gin.o low_gist.o guc.o cache.o adapter.o bitstring.o -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -Wl,-z,now -L/usr/lib/llvm-7/lib -L/usr/lib/aarch64-linux-gnu/mit-krb5 -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu//lib -lRDKitMolDraw2D -lRDKitMolTransforms -lRDKitMolHash -lRDKitFMCS -lRDKitChemReactions -lRDKitChemTransforms -lRDKitFileParsers -lRDKitSmilesParse -lRDKitFingerprints -lRDKitSubgraphs -lRDKitDescriptors -lRDKitPartialCharges -lRDKitSubstructMatch -lRDKitGraphMol -lRDKitEigenSolvers -lRDKitDataStructs -lRDKitDepictor -lRDKitRDGeometryLib -lRDKitRDGeneral -pthread sed -e's/@RDKIT_PG_BFP_GIST_FETCH@/FUNCTION 9 gbfp_fetch (internal),/;' \ -e's/@RDKIT_GIN_BFP_TRICONSISTENT@/FUNCTION 6 gin_bfp_triconsistent(internal, int2, bfp, int4, internal, internal, internal),/' \ -e's/@RDKIT_PARALLEL_SAFE@/PARALLEL SAFE/' \ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit.sql.in > rdkit--3.7.sql /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o rdkit_io.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_io.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o mol_op.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control may reach end of non-void function [-Wreturn-type] } ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:381:12: warning: incompatible integer to pointer conversion initializing 'CROMol' (aka 'void *') with an expression of type 'Datum' (aka 'unsigned long') [-Wint-conversion] CROMol mol = PG_GETARG_DATUM(1); ^ ~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:409:12: warning: incompatible integer to pointer conversion initializing 'CROMol' (aka 'void *') with an expression of type 'Datum' (aka 'unsigned long') [-Wint-conversion] CROMol mol = PG_GETARG_DATUM(1); ^ ~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:477:12: warning: incompatible integer to pointer conversion initializing 'CROMol' (aka 'void *') with an expression of type 'Datum' (aka 'unsigned long') [-Wint-conversion] CROMol mol = PG_GETARG_DATUM(1); ^ ~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:488:12: warning: incompatible integer to pointer conversion initializing 'CROMol' (aka 'void *') with an expression of type 'Datum' (aka 'unsigned long') [-Wint-conversion] CROMol mol = PG_GETARG_DATUM(1); ^ ~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control may reach end of non-void function [-Wreturn-type] } ^ 6 warnings generated. /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o bfp_op.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_op.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o sfp_op.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/sfp_op.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o rxn_op.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o rdkit_gist.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o bfp_gist.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gist.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o bfp_gin.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gin.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o low_gist.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function 'searchSfpCache' is invalid in C99 [-Wimplicit-function-declaration] fcinfo->flinfo->fn_extra = searchSfpCache( ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c:410:28: warning: incompatible integer to pointer conversion assigning to 'void *' from 'int' [-Wint-conversion] fcinfo->flinfo->fn_extra = searchSfpCache( ^ ~~~~~~~~~~~~~~~ 2 warnings generated. /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o guc.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/guc.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o cache.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c:312:17: warning: assigning to 'MemoryContextMethods *' (aka 'struct MemoryContextMethods *') from 'const MemoryContextMethods *' (aka 'const struct MemoryContextMethods *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] methodsOrig = ctx->methods; ^ ~~~~~~~~~~~~ 1 warning generated. /usr/bin/clang-7 -xc++ -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -emit-llvm -c -o adapter.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/adapter.cpp opt-7 -module-summary -f adapter.bc -o adapter.bc /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o bitstring.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/build-11' (cd /build/rdkit-201809.1+dfsg/Code; doxygen doxygen/doxygen.config) warning: Tag `SYMBOL_CACHE_SIZE' at line 337 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `SHOW_DIRECTORIES' at line 557 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `HTML_ALIGN_MEMBERS' at line 971 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `USE_INLINE_TREES' at line 1162 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 1425 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 1431 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/tutorial Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints Searching for files in directory 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directory /build/rdkit-201809.1+dfsg/Code/RDGeneral/hash Searching for files in directory /build/rdkit-201809.1+dfsg/Code/RDGeneral/hash/detail Searching for files in directory /build/rdkit-201809.1+dfsg/Code/RDBoost Searching for files in directory /build/rdkit-201809.1+dfsg/Code/DistGeom Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ForceField Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ForceField/UFF Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Numerics Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Geometry Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Features Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures Reading and parsing tag files Parsing files Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Atom.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Atom.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/atomic_data.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/atomic_data.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/AtomIterators.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/AtomIterators.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Bond.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Bond.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/BondIterators.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/BondIterators.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Canon.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Canon.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/CartesianProduct.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/CartesianProduct.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/Enumerate.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/Enumerate.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerateBase.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerateBase.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/RandomSample.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/RandomSample.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/PreprocessRxn.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/PreprocessRxn.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionFingerprints.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionFingerprints.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionParser.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionParser.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionPickler.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionPickler.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Chirality.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Chirality.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/DepictUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/DepictUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR2D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR2D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR3D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR3D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/ConnectivityDescriptors.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/ConnectivityDescriptors.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Crippen.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Crippen.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Data3Ddescriptors.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Data3Ddescriptors.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/EEM.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/EEM.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/GETAWAY.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/GETAWAY.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolData3Ddescriptors.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolData3Ddescriptors.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors3D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors3D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolSurf.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolSurf.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MORSE.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MORSE.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MQN.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MQN.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/PBF.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/PBF.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/PMI.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/PMI.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Property.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Property.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/RDF.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/RDF.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/RegisterDescriptor.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/RegisterDescriptor.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/WHIM.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/WHIM.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/details.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/details.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParsers.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParsers.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParserUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParserUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileStereochem.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileStereochem.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolWriters.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolWriters.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ProximityBonds.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ProximityBonds.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceWriters.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceWriters.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalog.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalog.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Filters.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Filters.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MACCS.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MACCS.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Composition2N.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Composition2N.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/DebugTrace.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/DebugTrace.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/DuplicatedSeedCache.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/DuplicatedSeedCache.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/FMCS.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/FMCS.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Graph.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Graph.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MatchTable.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MatchTable.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/RingMatchTableSet.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/RingMatchTableSet.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Seed.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Seed.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SeedSet.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SeedSet.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructureCache.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructureCache.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Target.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Target.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/TargetMatch.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/TargetMatch.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/MMFF.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/MMFF.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/UFF.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/UFF.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/GraphMol.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/GraphMol.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/AlignMolecules.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/AlignMolecules.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolBundle.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolBundle.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalog.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalog.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DCairo.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DCairo.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DQt.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DQt.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2Dwx.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2Dwx.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MultiMolDraw2D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MultiMolDraw2D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/MolHash.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/MolHash.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/details.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/details.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/MolInterchange.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/MolInterchange.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolPickler.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolPickler.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Charge.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Charge.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Fragment.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Fragment.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Metal.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Metal.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/MolStandardize.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/MolStandardize.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Normalize.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Normalize.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Tautomer.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Tautomer.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Validate.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Validate.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/MolTransforms.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/MolTransforms.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MonomerInfo.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MonomerInfo.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/new_canon.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/new_canon.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/PeriodicTable.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/PeriodicTable.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryAtom.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryAtom.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryBond.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryBond.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/RDKitBase.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/RDKitBase.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/RDKitQueries.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/RDKitQueries.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/RGroupDecomp.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/RGroupDecomp.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/RingInfo.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/RingInfo.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Rings.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Rings.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/RWMol.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/RWMol.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SanitException.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SanitException.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNAttribs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNAttribs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParse.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParse.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParseOps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParseOps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/primes.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/primes.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParse.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParse.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StereoGroup.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StereoGroup.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Pattern.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Pattern.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/ReCharge.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/ReCharge.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Stereo.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Stereo.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StripSmallFragments.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StripSmallFragments.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructChecker.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructChecker.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Tautomer.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Tautomer.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Utilites.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Utilites.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/Subgraphs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/Subgraphs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructMatch.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructMatch.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/SubstructLibrary.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/SubstructLibrary.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Snapshot.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Snapshot.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Trajectory.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Trajectory.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Catalogs/Catalog.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Catalogs/Catalog.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/base64.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/base64.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVect.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVect.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVects.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVects.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVectUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVectUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/DatastructsException.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/DatastructsException.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteDistMat.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteDistMat.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteValueVect.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteValueVect.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/ExplicitBitVect.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/ExplicitBitVect.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/FPBReader.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/FPBReader.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/MultiFPBReader.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/MultiFPBReader.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/SparseBitVect.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/SparseBitVect.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/SparseIntVect.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/SparseIntVect.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/AndQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/AndQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/EqualityQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/EqualityQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/GreaterEqualQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/GreaterEqualQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/GreaterQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/GreaterQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/LessEqualQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/LessEqualQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/LessQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/LessQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/OrQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/OrQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/Query.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/Query.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/QueryObjects.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/QueryObjects.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/RangeQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/RangeQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/SetQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/SetQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/XOrQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/XOrQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/CorrMatGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/CorrMatGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoBitRanker.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoBitRanker.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoGainFuncs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoGainFuncs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/MetricFuncs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/MetricFuncs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/SimDivPickers/DistPicker.h... Parsing file /build/rdkit-201809.1+dfsg/Code/SimDivPickers/DistPicker.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.h... Parsing file /build/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.h... Parsing file /build/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/BadFileException.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/BadFileException.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/BoostEndInclude.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/BoostEndInclude.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/BoostStartInclude.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/BoostStartInclude.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/Dict.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/Dict.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/Exceptions.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/Exceptions.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/export.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/export.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/FileParseException.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/FileParseException.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/hanoiSort.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/hanoiSort.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/LocaleSwitcher.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/LocaleSwitcher.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/Ranking.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/Ranking.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDAny.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDAny.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDConfig.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDConfig.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDLog.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDLog.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDProps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDProps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDThreads.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDThreads.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue-doublemagic.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue-doublemagic.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue-taggedunion.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue-taggedunion.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/StreamOps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/StreamOps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/types.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/types.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/utils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/utils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/versions.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/versions.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/boost_numpy.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/boost_numpy.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/import_array.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/import_array.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/iterator_next.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/iterator_next.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/pyint_api.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/pyint_api.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/python.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/python.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/BoundsMatrix.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/BoundsMatrix.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/ChiralSet.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/ChiralSet.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/ChiralViolationContrib.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/ChiralViolationContrib.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/DistGeomUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/DistGeomUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/DistViolationContrib.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/DistViolationContrib.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/FourthDimContrib.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/FourthDimContrib.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/TriangleSmooth.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/TriangleSmooth.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/Contrib.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/Contrib.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/DistanceConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/DistanceConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/OopBend.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/OopBend.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleBend.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleBend.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/BondStretch.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/BondStretch.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/DistanceConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/DistanceConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Nonbonded.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Forc/build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h:15: warning: the name `Contribs.h' supplied as the second argument in the \file statement matches the following input files: /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h Please use a more specific name by including a (larger) part of the path! /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h:13: warning: the name `Contribs.h' supplied as the second argument in the \file statement matches the following input files: /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h Please use a more specific name by including a (larger) part of the path! eField/UFF/Nonbonded.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Params.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Params.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionAngle.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionAngle.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/AlignPoints.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/AlignPoints.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/Matrix.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/Matrix.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/BFGSOpt.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/BFGSOpt.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/SquareMatrix.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/SquareMatrix.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/SymmMatrix.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/SymmMatrix.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/Vector.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/Vector.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/Grid3D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/Grid3D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/GridUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/GridUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/point.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/point.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/Transform.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/Transform.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/Transform2D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/Transform2D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/Transform3D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/Transform3D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/UniformGrid3D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/UniformGrid3D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/Utils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/Utils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Features/Feature.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Features/Feature.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/ChemicalFeature.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/ChemicalFeature.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.h... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file AcidBaseCatalogEntry.h... Generating code for file AcidBaseCatalogParams.h... Generating code for file AcidBaseCatalogUtils.h... Generating code for file AlignMolecules.h... Generating code for file AlignPoints.h... Generating code for file AndQuery.h... Generating code for file AngleBend.h... Generating code for file AngleBend.h... Generating code for file AngleConstraint.h... Generating code for file AngleConstraint.h... Generating code for file Atom.h... Generating code for file atomic_data.h... Generating code for file AtomIterators.h... Generating code for file AtomPairGenerator.h... Generating code for file AtomPairs.h... Generating code for file AtomTyper.h... Generating code for file AtomTyper.h... Generating code for file AUTOCORR2D.h... Generating code for file AUTOCORR3D.h... Generating code for file BadFileException.h... Generating code for file base64.h... Generating code for file BFGSOpt.h... Generating code for file BitOps.h... Generating code for file BitVect.h... Generating code for file BitVects.h... Generating code for file BitVectUtils.h... Generating code for file Bond.h... Generating code for file BondIterators.h... Generating code for file BondStretch.h... Generating code for file BondStretch.h... Generating code for file boost_numpy.h... Generating code for file BoostEndInclude.h... Generating code for file BoostStartInclude.h... Generating code for file BoundsMatrix.h... Generating code for file BoundsMatrixBuilder.h... Generating code for file Builder.h... Generating code for file Builder.h... Generating code for file Canon.h... Generating code for file CartesianProduct.h... Generating code for file Catalog.h... Generating code for file CatalogEntry.h... Generating code for file CatalogParams.h... Generating code for file Charge.h... Generating code for file ChemicalFeature.h... Generating code for file ChemTransforms.h... Generating code for file Chirality.h... Generating code for file ChiralSet.h... Generating code for file ChiralViolationContrib.h... Generating code for file Composition2N.h... Generating code for file Conformer.h... Generating code for file ConnectivityDescriptors.h... Generating code for file Contrib.h... Generating code for file Contribs.h... Generating code for file Contribs.h... Generating code for file CorrMatGenerator.h... Generating code for file Crippen.h... Generating code for file Data3Ddescriptors.h... Generating code for file DatastructsException.h... Generating code for file DebugTrace.h... Generating code for file DepictUtils.h... Generating code for file details.h... Generating code for file details.h... Generating code for file Dict.h... Generating code for file DiscreteDistMat.h... Generating code for file DiscreteValueVect.h... Generating code for file DistanceConstraint.h... Generating code for file DistanceConstraint.h... Generating code for file DistGeomUtils.h... Generating code for file DistPicker.h... Generating code for file DistViolationContrib.h... Generating code for file DuplicatedSeedCache.h... Generating code for file EEM.h... Generating code for file EmbeddedFrag.h... Generating code for file Embedder.h... Generating code for file Enumerate.h... Generating code for file EnumerateBase.h... Generating code for file EnumerateTypes.h... Generating code for file EnumerationPickler.h... Generating code for file EnumerationStrategyBase.h... Generating code for file EqualityQuery.h... Generating code for file EvenSamplePairs.h... Generating code for file Exceptions.h... Generating code for file ExplicitBitVect.h... Generating code for file export.h... Generating code for file Feature.h... Generating code for file FeatureParser.h... Generating code for file FileParseException.h... Generating code for file FileParsers.h... Generating code for file FileParserUtils.h... Generating code for file FilterCatalog.h... Generating code for file FilterCatalogEntry.h... Generating code for file FilterMatcherBase.h... Generating code for file FilterMatchers.h... Generating code for file Filters.h... Generating code for file FingerprintGenerator.h... Generating code for file Fingerprints.h... Generating code for file FingerprintUtil.h... Generating code for file FMCS.h... Generating code for file ForceField.h... Generating code for file FourthDimContrib.h... Generating code for file FPBReader.h... Generating code for file FragCatalogEntry.h... Generating code for file FragCatalogUtils.h... Generating code for file FragCatGenerator.h... Generating code for file FragCatParams.h... Generating code for file FragFPGenerator.h... Generating code for file Fragment.h... Generating code for file FragmentCatalogEntry.h... Generating code for file FragmentCatalogParams.h... Generating code for file FragmentCatalogUtils.h... Generating code for file FreeChemicalFeature.h... Generating code for file FunctionalGroupHierarchy.h... Generating code for file GasteigerCharges.h... Generating code for file GasteigerParams.h... Generating code for file GETAWAY.h... Generating code for file Graph.h... Generating code for file GraphMol.h... Generating code for file GreaterEqualQuery.h... Generating code for file GreaterQuery.h... Generating code for file Grid3D.h... Generating code for file GridUtils.h... Generating code for file hanoiSort.h... Generating code for file HierarchicalClusterPicker.h... Generating code for file import_array.h... Generating code for file InfoBitRanker.h... Generating code for file InfoGainFuncs.h... Generating code for file Invariant.h... Generating code for file Inversion.h... Generating code for file iterator_next.h... Generating code for file LessEqualQuery.h... Generating code for file LessQuery.h... Generating code for file Lipinski.h... Generating code for file LocaleSwitcher.h... Generating code for file MACCS.h... Generating code for file MatchTable.h... Generating code for file Matrix.h... Generating code for file MaximumCommonSubgraph.h... Generating code for file MaxMinPicker.h... Generating code for file Metal.h... Generating code for file MetricFuncs.h... Generating code for file MetricMatrixCalc.h... Generating code for file MMFF.h... Generating code for file MMPA.h... Generating code for file MolBundle.h... Generating code for file MolCatalog.h... Generating code for file MolCatalogEntry.h... Generating code for file MolCatalogParams.h... Generating code for file MolChemicalFeature.h... Generating code for file MolChemicalFeatureDef.h... Generating code for file MolChemicalFeatureFactory.h... Generating code for file MolData3Ddescriptors.h... Generating code for file MolDescriptors.h... Generating code for file MolDescriptors3D.h... Generating code for file MolDraw2D.h... Generating code for file MolDraw2DCairo.h... Generating code for file MolDraw2DDetails.h... Generating code for file MolDraw2DQt.h... Generating code for file MolDraw2DSVG.h... Generating code for file MolDraw2DUtils.h... Generating code for file MolDraw2Dwx.h... Generating code for file MolFileStereochem.h... Generating code for file MolFragmenter.h... Generating code for file MolHash.h... Generating code for file MolInterchange.h... Generating code for file MolOps.h... Generating code for file MolPickler.h... Generating code for file MolStandardize.h... Generating code for file MolSupplier.h... Generating code for file MolSurf.h... Generating code for file MolTransforms.h... Generating code for file MolWriters.h... Generating code for file MonomerInfo.h... Generating code for file MorganFingerprints.h... Generating code for file MorganGenerator.h... Generating code for file MORSE.h... Generating code for file MQN.h... Generating code for file MultiFPBReader.h... Generating code for file MultiMolDraw2D.h... Generating code for file new_canon.h... Generating code for file Nonbonded.h... Generating code for file Nonbonded.h... Generating code for file Normalize.h... Generating code for file O3AAlignMolecules.h... Generating code for file OopBend.h... Generating code for file OrQuery.h... Generating code for file Params.h... Generating code for file Params.h... Generating code for file Pattern.h... Generating code for file PBF.h... Generating code for file PeriodicTable.h... Generating code for file PMI.h... Generating code for file point.h... Generating code for file PositionConstraint.h... Generating code for file PositionConstraint.h... Generating code for file PowerEigenSolver.h... Generating code for file PreprocessRxn.h... Generating code for file primes.h... Generating code for file Property.h... Generating code for file ProximityBonds.h... Generating code for file pyint_api.h... Generating code for file PySequenceHolder.h... Generating code for file python.h... Generating code for file python_streambuf.h... Generating code for file Query.h... Generating code for file QueryAtom.h... Generating code for file QueryBond.h... Generating code for file QueryObjects.h... Generating code for file QueryOps.h... Generating code for file RandomSample.h... Generating code for file RandomSampleAllBBs.h... Generating code for file RangeQuery.h... Generating code for file Ranking.h... Generating code for file RDAny.h... Generating code for file RDConfig.h... Generating code for file RDDepictor.h... Generating code for file RDF.h... Generating code for file RDKitBase.h... Generating code for file RDKitFPGenerator.h... Generating code for file RDKitQueries.h... Generating code for file RDLog.h... Generating code for file RDProps.h... Generating code for file RDThreads.h... Generating code for file RDValue-doublemagic.h... Generating code for file RDValue-taggedunion.h... Generating code for file RDValue.h... Generating code for file Reaction.h... Generating code for file ReactionFingerprints.h... Generating code for file ReactionParser.h... Generating code for file ReactionPickler.h... Generating code for file ReactionRunner.h... Generating code for file ReactionUtils.h... Generating code for file ReCharge.h... Generating code for file ReducedGraphs.h... Generating code for file RegisterDescriptor.h... Generating code for file Resonance.h... Generating code for file RGroupDecomp.h... Generating code for file RingInfo.h... Generating code for file RingMatchTableSet.h... Generating code for file Rings.h... Generating code for file ROMol.h... Generating code for file RWMol.h... Generating code for file SanitException.h... Generating code for file SanitizeRxn.h... Generating code for file Seed.h... Generating code for file SeedSet.h... Generating code for file SequenceParsers.h... Generating code for file SequenceWriters.h... Generating code for file SetQuery.h... Generating code for file ShapeEncoder.h... Generating code for file ShapeUtils.h... Generating code for file SLNAttribs.h... Generating code for file SLNParse.h... Generating code for file SLNParseOps.h... Generating code for file SmartsWrite.h... Generating code for file SmilesParse.h... Generating code for file SmilesParseOps.h... Generating code for file SmilesWrite.h... Generating code for file Snapshot.h... Generating code for file SparseBitVect.h... Generating code for file SparseIntVect.h... Generating code for file SquareMatrix.h... Generating code for file Stereo.h... Generating code for file StereoGroup.h... Generating code for file StreamOps.h... Generating code for file StretchBend.h... Generating code for file StripSmallFragments.h... Generating code/build/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.h:174: warning: found at different nesting level (7) than expected (4) /build/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.h:175: warning: end of comment block while expecting command for file StructChecker.h... Generating code for file StructCheckerOptions.h... Generating code for file Subgraphs.h... Generating code for file SubgraphUtils.h... Generating code for file SubstructLibrary.h... Generating code for file SubstructMatch.h... Generating code for file SubstructMatchCustom.h... Generating code for file SubstructureCache.h... Generating code for file SubstructUtils.h... Generating code for file SymmMatrix.h... Generating code for file Target.h... Generating code for file TargetMatch.h... Generating code for file Tautomer.h... Generating code for file Tautomer.h... Generating code for file TautomerCatalogEntry.h... Generating code for file TautomerCatalogParams.h... Generating code for file TautomerCatalogUtils.h... Generating code for file TopologicalTorsionGenerator.h... Generating code for file TorsionAngle.h... Generating code for file TorsionAngle.h... Generating code for file TorsionAngleM6.h... Generating code for file TorsionConstraint.h... Generating code for file TorsionConstraint.h... Generating code for file TorsionPreferences.h... Generating code for file Trajectory.h... Generating code for file Transform.h... Generating code for file Transform2D.h... Generating code for file Transform3D.h... Generating code for file TransformCatalogEntry.h... Generating code for file TransformCatalogParams.h... Generating code for file TransformCatalogUtils.h... Generating code for file TriangleSmooth.h... Generating code for file types.h... Generating code for file UFF.h... Generating code for file UniformGrid3D.h... Generating code for file USRDescriptor.h... Generating code for file Utilites.h... Generating code for file Utils.h... Generating code for file utils.h... Generating code for file Validate.h... Generating code for file Vector.h... Generating code for file versions.h... Generating code for file WHIM.h... Generating code for file XOrQuery.h... Generating file documentation... Generating docs for file AcidBaseCatalogEntry.h... Generating docs for file AcidBaseCatalogParams.h... Generating docs for file AcidBaseCatalogUtils.h... Generating docs for file AlignMolecules.h... Generating docs for file AlignPoints.h... Generating docs for file AndQuery.h... Generating docs for file AngleBend.h... Generating docs for file AngleBend.h... Generating docs for file AngleConstraint.h... Generating docs for file AngleConstraint.h... Generating docs for file Atom.h... Generating docs for file atomic_data.h... Generating docs for file AtomIterators.h... Generating docs for file AtomPairGenerator.h... Generating docs for file AtomPairs.h... Generating docs for file AtomTyper.h... Generating docs for file AtomTyper.h... Generating docs for file AUTOCORR2D.h... Generating docs for file AUTOCORR3D.h... Generating docs for file BadFileException.h... Generating docs for file base64.h... Generating docs for file BFGSOpt.h... Generating docs for file BitOps.h... Generating docs for file BitVect.h... Generating docs for file BitVects.h... Generating docs for file BitVectUtils.h... Generating docs for file Bond.h... Generating docs for file BondIterators.h... Generating docs for file BondStretch.h... Generating docs for file BondStretch.h... Generating docs for file boost_numpy.h... Generating docs for file BoostEndInclude.h... Generating docs for file BoostStartInclude.h... Generating docs for file BoundsMatrix.h... Generating docs for file BoundsMatrixBuilder.h... Generating docs for file Builder.h... Generating docs for file Builder.h... Generating docs for file Canon.h... Generating docs for file CartesianProduct.h... Generating docs for file Catalog.h... Generating docs for file CatalogEntry.h... Generating docs for file CatalogParams.h... Generating docs for file Charge.h... Generating docs for file ChemicalFeature.h... Generating docs for file ChemTransforms.h... Generating docs for file Chirality.h... Generating docs for file ChiralSet.h... Generating docs for file ChiralViolationContrib.h... Generating docs for file Composition2N.h... Generating docs for file Conformer.h... Generating docs for file ConnectivityDescriptors.h... Generating docs for file Contrib.h... Generating docs for file Contribs.h... Generating docs for file Contribs.h... Generating docs for file CorrMatGenerator.h... Generating docs for file Crippen.h... Generating docs for file Data3Ddescriptors.h... Generating docs for file DatastructsException.h... Generating docs for file DebugTrace.h... Generating docs for file DepictUtils.h... Generating docs for file details.h... Generating docs for file details.h... Generating docs for file Dict.h... Generating docs for file DiscreteDistMat.h... Generating docs for file DiscreteValueVect.h... Generating docs for file DistanceConstraint.h... Generating docs for file DistanceConstraint.h... Generating docs for file DistGeomUtils.h... Generating docs for file DistPicker.h... Generating docs for file DistViolationContrib.h... Generating docs for file DuplicatedSeedCache.h... Generating docs for file EEM.h... Generating docs for file EmbeddedFrag.h... Generating docs for file Embedder.h... Generating docs for file Enumerate.h... Generating docs for file EnumerateBase.h... Generating docs for file EnumerateTypes.h... Generating docs for file EnumerationPickler.h... Generating docs for file EnumerationStrategyBase.h... Generating docs for file EqualityQuery.h... Generating docs for file EvenSamplePairs.h... Generating docs for file Exceptions.h... Generating docs for file ExplicitBitVect.h... Generating docs for file export.h... Generating docs for file Feature.h... Generating docs for file FeatureParser.h... Generating docs for file FileParseException.h... Generating docs for file FileParsers.h... Generating docs for file FileParserUtils.h... Generating docs for file FilterCatalog.h... Generating docs for file FilterCatalogEntry.h... Generating docs for file FilterMatcherBase.h... Generating docs for file FilterMatchers.h... Generating docs for file Filters.h... Generating docs for file FingerprintGenerator.h... Generating docs for file Fingerprints.h... Generating docs for file FingerprintUtil.h... Generating docs for file FMCS.h... Generating docs for file ForceField.h... Generating docs for file FourthDimContrib.h... Generating docs for file FPBReader.h... Generating docs for file FragCatalogEntry.h... Generating docs for file FragCatalogUtils.h... Generating docs for file FragCatGenerator.h... Generating docs for file FragCatParams.h... Generating docs for file FragFPGenerator.h... Generating docs for file Fragment.h... Generating docs for file FragmentCatalogEntry.h... Generating docs for file FragmentCatalogParams.h... Generating docs for file FragmentCatalogUtils.h... Generating docs for file FreeChemicalFeature.h... Generating docs for file FunctionalGroupHierarchy.h... Generating docs for file GasteigerCharges.h... Generating docs for file GasteigerParams.h... Generating docs for file GETAWAY.h... Generating docs for file Graph.h... Generating docs for file GraphMol.h... Generating docs for file GreaterEqualQuery.h... Generating docs for file GreaterQuery.h... Generating docs for file Grid3D.h... Generating docs for file GridUtils.h... Generating docs for file hanoiSort.h... Generating docs for file HierarchicalClusterPicker.h... Generating docs for file import_array.h... Generating docs for file InfoBitRanker.h... Generating docs for file InfoGainFuncs.h... Generating docs for file Invariant.h... Generating docs for file Inversion.h... Generating docs for file iterator_next.h... Generating docs for file LessEqualQuery.h... Generating docs for file LessQuery.h... Generating docs for file Lipinski.h... Generating docs for file LocaleSwitcher.h... Generating docs for file MACCS.h... Generating docs for file MatchTable.h... Generating docs for file Matrix.h... Generating docs for file MaximumCommonSubgraph.h... Generating docs for file MaxMinPicker.h... Generating docs for file Metal.h... Generating docs for file MetricFuncs.h... Generating docs for file MetricMatrixCalc.h... Generating docs for file MMFF.h... Generating docs for file MMPA.h... Generating docs for file MolBundle.h... Generating docs for file/build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:485: warning: Found unknown command `\overloadquery' /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:494: warning: Found unknown command `\overloadquery' MolCatalog.h... Generating docs for file MolCatalogEntry.h... Generating docs for file MolCatalogParams.h... Generating docs for file MolChemicalFeature.h... Generating docs for file MolChemicalFeatureDef.h... Generating docs for file MolChemicalFeatureFactory.h... Generating docs for file MolData3Ddescriptors.h... Generating docs for file MolDescriptors.h... Generating docs for file MolDescriptors3D.h... Generating docs for file MolDraw2D.h... Generating docs for file MolDraw2DCairo.h... Generating docs for file MolDraw2DDetails.h... Generating docs for file MolDraw2DQt.h... Generating docs for file MolDraw2DSVG.h... Generating docs for file MolDraw2DUtils.h... Generating docs for file MolDraw2Dwx.h... Generating docs for file MolFileStereochem.h... Generating docs for file MolFragmenter.h... Generating docs for file MolHash.h... Generating docs for file MolInterchange.h... Generating docs for file MolOps.h... Generating docs for file MolPickler.h... Generating docs for file MolStandardize.h... Generating docs for file MolSupplier.h... Generating docs for file MolSurf.h... Generating docs for file MolTransforms.h... Generating docs for file MolWriters.h... Generating docs for file MonomerInfo.h... Generating docs for file MorganFingerprints.h... Generating docs for file MorganGenerator.h... Generating docs for file MORSE.h... Generating docs for file MQN.h... Generating docs for file MultiFPBReader.h... Generating docs for file MultiMolDraw2D.h... Generating docs for file new_canon.h... Generating docs for file Nonbonded.h... Generating docs for file Nonbonded.h... Generating docs for file Normalize.h... Generating docs for file O3AAlignMolecules.h... Generating docs for file OopBend.h... Generating docs for file OrQuery.h... Generating docs for file Params.h... Generating docs for file Params.h... Generating docs for file Pattern.h... Generating docs for file PBF.h... Generating docs for file PeriodicTable.h... Generating docs for file PMI.h... Generating docs for file point.h... Generating docs for file PositionConstraint.h... Generating docs for file PositionConstraint.h... Generating docs for file PowerEigenSolver.h... Generating docs for file PreprocessRxn.h... Generating docs for file primes.h... Generating docs for file Property.h... Generating docs for file ProximityBonds.h... Generating docs for file pyint_api.h... Generating docs for file PySequenceHolder.h... Generating docs for file python.h... Generating docs for file python_streambuf.h... Generating docs for file Query.h... Generating docs for file QueryAtom.h... Generating docs for file QueryBond.h... Generating docs for file QueryObjects.h... Generating docs for file QueryOps.h... Generating docs for file RandomSample.h... Generating docs for file RandomSampleAllBBs.h... Generating docs for file RangeQuery.h... Generating docs for file Ranking.h... Generating docs for file RDAny.h... Generating docs for file RDConfig.h... Generating docs for file RDDepictor.h... Generating docs for file RDF.h... Generating docs for file RDKitBase.h... Generating docs for file RDKitFPGenerator.h... Generating docs for file RDKitQueries.h... Generating docs for file RDLog.h... Generating docs for file RDProps.h... Generating docs for file RDThreads.h... Generating docs for file RDValue-doublemagic.h... Generating docs for file RDValue-taggedunion.h... Generating docs for file RDValue.h... Generating docs for file Reaction.h... Generating docs for file ReactionFingerprints.h... Generating docs for file ReactionParser.h... Generating docs for file ReactionPickler.h... Generating docs for file ReactionRunner.h... Generating docs for file ReactionUtils.h... Generating docs for file ReCharge.h... Generating docs for file ReducedGraphs.h... Generating docs for file RegisterDescriptor.h... Generating docs for file Resonance.h... Generating docs for file RGroupDecomp.h... Generating docs for file RingInfo.h... Generating docs for file RingMatchTableSet.h... Generating docs for file Rings.h... Generating docs for file ROMol.h... Generating docs for file RWMol.h... Generating docs for file SanitException.h... Generating docs for file SanitizeRxn.h... Generating docs for file Seed.h... Generating docs for file SeedSet.h... Generating docs for file SequenceParsers.h... Generating docs for file SequenceWriters.h... Generating docs for file SetQuery.h... Generating docs for file ShapeEncoder.h... Generating docs for file ShapeUtils.h... Generating docs for file SLNAttribs.h... Generating docs for file SLNParse.h... Generating docs for file SLNParseOps.h... Generating docs for file SmartsWrite.h... Generating docs for file SmilesParse.h... Generating docs for file SmilesParseOps.h... Generating docs for file SmilesWrite.h... Generating docs for file Snapshot.h... Generating docs for file SparseBitVect.h... Generating docs for file SparseIntVect.h... Generating docs for file SquareMatrix.h... Generating docs for file Stereo.h... Generating docs for file StereoGroup.h... Generating docs for file StreamOps.h... Generating docs for file StretchBend.h... Generating docs for file StripSmallFragments.h... Generating docs for file StructChecker.h... Generating docs for file StructCheckerOptions.h... Generating docs for file Subgraphs.h... Generating docs for file SubgraphUtils.h... Generating docs for file SubstructLibrary.h... Generating docs for file SubstructMatch.h... Generating docs for file SubstructMatchCustom.h... Generating docs for file SubstructureCache.h... Generating docs for file SubstructUtils.h... Generating docs for file SymmMatrix.h... Generating docs for file Target.h... Generating docs for file TargetMatch.h... Generating docs for file Tautomer.h... Generating docs for file Tautomer.h... Generating docs for file TautomerCatalogEntry.h... Generating docs for file TautomerCatalogParams.h... Generating docs for file TautomerCatalogUtils.h... Generating docs for file TopologicalTorsionGenerator.h... Generating docs for file TorsionAngle.h... Generating docs for file TorsionAngle.h... Generating docs for file TorsionAngleM6.h... Generating docs for file TorsionConstraint.h... Generating docs for file TorsionConstraint.h... Generating docs for file TorsionPreferences.h... Generating docs for file Trajectory.h... Generating docs for file Transform.h... Generating docs for file Transform2D.h... Generating docs for file Transform3D.h... Generating docs for file TransformCatalogEntry.h... Generating docs for file TransformCatalogParams.h... Generating docs for file TransformCatalogUtils.h... Generating docs for file TriangleSmooth.h... Generating docs for file types.h... Generating docs for file UFF.h... Generating docs for file UniformGrid3D.h... Generating docs for file USRDescriptor.h... Generating docs for file Utilites.h... Generating docs for file Utils.h... Generating docs for file utils.h... Generating docs for file Validate.h... Generating docs for file Vector.h... Generating docs for file versions.h... Generating docs for file WHIM.h... Generating docs for file XOrQuery.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound BitVect... Generating docs for compound Data3Ddescriptors... Generating docs for compound DatastructsException... Generating docs for compound ExplicitBitVect... Generating docs for compound IndexErrorException... Generating docs for compound KeyErrorException... Generating docs for compound MolData3Ddescriptors... Generating docs for compound PySequenceHolder... Generating docs for compound SparseBitVect... Generating docs for compound ValueErrorException... Generating namespace index... Generating docs for namespace BFGSOpt Generating docs for namespace boost Generating docs for namespace boost::logging Generating docs for compound boost::logging::rdLogger... Generating docs for namespace boost_adaptbx Generating docs for namespace boost_adaptbx::python Generating docs for compound boost_adaptbx::python::ostream... Generating docs for compound boost_adaptbx::python::streambuf... Generating docs for nested compound boost_adaptbx::python::streambuf::istream... Generating docs for nested compo/build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h:133: warning: The following parameters of ForceFields::ForceField::minimize(unsigned int snapshotFreq, RDKit::SnapshotVect *snapshotVect, unsigned int maxIts=200, double forceTol=1e-4, double energyTol=1e-6) are not documented: parameter 'snapshotFreq' parameter 'snapshotVect' /build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h:139: warning: argument 'snapshotFreq' of command @param is not found in the argument list of ForceFields::ForceField::minimize(unsigned int maxIts=200, double forceTol=1e-4, double energyTol=1e-6) /build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h:139: warning: argument 'snapshotVect' of command @param is not found in the argument list of ForceFields::ForceField::minimize(unsigned int maxIts=200, double forceTol=1e-4, double energyTol=1e-6) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.h:31: warning: argument 'angleType' of command @param is not found in the argument list of ForceFields::MMFF::AngleBendContrib::AngleBendContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, const MMFFAngle *mmffAngleParams, const MMFFProp *mmffPropParamsCentralAtom) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.h:40: warning: The following parameters of ForceFields::MMFF::AngleBendContrib::AngleBendContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, const MMFFAngle *mmffAngleParams, const MMFFProp *mmffPropParamsCentralAtom) are not documented: parameter 'mmffAngleParams' parameter 'mmffPropParamsCentralAtom' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h:27: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h:27: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h:36: warning: The following parameters of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented: parameter 'minAngleDeg' parameter 'maxAngleDeg' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h:28: warning: argument 'bondType' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h:28: warning: argument 'end1Params' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h:28: warning: argument 'end2Params' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h:36: warning: The following parameters of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) are not documented: parameter 'mmffBondParams' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.h:59: warning: The following parameters of ForceFields::MMFF::EleContrib::EleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, double chargeTerm, boost::uint8_t dielModel, bool is1_4) are not documented: parameter 'chargeTerm' parameter 'dielModel' parameter 'is1_4' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h:161: warning: argument 'mmffArom' of command @param is not found in the argument list of ForceFields::MMFF::MMFFAromCollection::getMMFFArom(const boost::uint8_t *aromatic_types=NULL) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h:177: warning: The following parameters of ForceFields::MMFF::MMFFAromCollection::getMMFFArom(const boost::uint8_t *aromatic_types=NULL) are not documented: parameter 'aromatic_types' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h:1086: warning: The following parameters of ForceFields::MMFF::MMFFOopCollection::getMMFFOop(const bool isMMFFs=false, const std::string &mmffOop="") are not documented: parameter 'isMMFFs' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h:1215: warning: The following parameters of ForceFields::MMFF::MMFFTorCollection::getMMFFTor(const bool isMMFFs, const std::string &mmffTor="") are not documented: parameter 'isMMFFs' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.h:28: warning: argument 'minDispl' of command @param is not found in the argument list of ForceFields::MMFF::PositionConstraintContrib::PositionConstraintContrib(ForceField *owner, unsigned int idx, double maxDispl, double forceConst) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.h:32: warning: argument 'angleType' of command @param is not found in the argument list of ForceFields::MMFF::StretchBendContrib::StretchBendContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const unsigned int idx3, const MMFFStbn *mmffStbnParams, const MMFFAngle *mmffAngleParams, const MMFFBond *mmffBondParams1, const MMFFBond *mmffBondParams2) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.h:41: warning: The following parameters of ForceFields::MMFF::StretchBendContrib::StretchBendContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const unsigned int idx3, const MMFFStbn *mmffStbnParams, const MMFFAngle *mmffAngleParams, const MMFFBond *mmffBondParams1, const MMFFBond *mmffBondParams2) are not documented: parameter 'mmffStbnParams' parameter 'mmffAngleParams' parameter 'mmffBondParams1' parameter 'mmffBondParams2' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.h:34: warning: argument 'torsionType' of command @param is not found in the argument list of ForceFields::MMFF::TorsionAngleContrib::TorsionAngleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.h:45: warning: The following parameters of ForceFields::MMFF::TorsionAngleContrib::TorsionAngleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams) are not documented: parameter 'mmffTorParams' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.h:35: warning: The following parameters of ForceFields::MMFF::VdWContrib::VdWContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, const MMFFVdWRijstarEps *mmffVdWConstants) are not documented: parameter 'mmffVdWConstants' /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h:27: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h:27: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h:36: warning: The following parameters of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented: parameter 'minAngleDeg' parameter 'maxAngleDeg' und boost_adaptbx::python::streambuf::ostream... Generating docs for compound boost_adaptbx::python::streambuf_capsule... Generating docs for namespace ChemicalFeatures Generating docs for compound ChemicalFeatures::ChemicalFeature... Generating docs for compound ChemicalFeatures::FreeChemicalFeature... Generating docs for namespace DistGeom Generating docs for compound DistGeom::BoundsMatrix... Generating docs for compound DistGeom::ChiralSet... Generating docs for compound DistGeom::ChiralViolationContrib... Generating docs for compound DistGeom::DistViolationContrib... Generating docs for compound DistGeom::FourthDimContrib... Generating docs for namespace ForceFields Generating docs for compound ForceFields::ForceField... Generating docs for compound ForceFields::ForceFieldContrib... Generating docs for namespace ForceFields::CrystalFF Generating docs for compound ForceFields::CrystalFF::TorsionAngleContribM6... Generating docs for namespace ForceFields::MMFF Generating docs for compound ForceFields::MMFF::AngleBendContrib... Generating docs for compound ForceFields::MMFF::AngleConstraintContrib... Generating docs for compound ForceFields::MMFF::BondStretchContrib... Generating docs for compound ForceFields::MMFF::DistanceConstraintContrib... Generating docs for compound ForceFields::MMFF::EleContrib... Generating docs for compound ForceFields::MMFF::MMFFAngle... Generating docs for compound ForceFields::MMFF::MMFFAngleCollection... Generating docs for compound ForceFields::MMFF::MMFFAromCollection... Generating docs for compound ForceFields::MMFF::MMFFBndkCollection... Generating docs for compound ForceFields::MMFF::MMFFBond... Generating docs for compound ForceFields::MMFF::MMFFBondCollection... Generating docs for compound ForceFields::MMFF::MMFFChg... Generating docs for compound ForceFields::MMFF::MMFFChgCollection... Generating docs for compound ForceFields::MMFF::MMFFCovRadPauEle... Generating docs for compound ForceFields::MMFF::MMFFCovRadPauEleCollection... Generating docs for compound ForceFields::MMFF::MMFFDef... Generating docs for compound ForceFields::MMFF::MMFFDefCollection... Generating docs for compound ForceFields::MMFF::MMFFDfsbCollection... Generating docs for compound ForceFields::MMFF::MMFFHerschbachLaurie... Generating docs for compound ForceFields::MMFF::MMFFHerschbachLaurieCollection... Generating docs for compound ForceFields::MMFF::MMFFOop... Generating docs for compound ForceFields::MMFF::MMFFOopCollection... Generating docs for compound ForceFields::MMFF::MMFFPBCI... Generating docs for compound ForceFields::MMFF::MMFFPBCICollection... Generating docs for compound ForceFields::MMFF::MMFFProp... Generating docs for compound ForceFields::MMFF::MMFFPropCollection... Generating docs for compound ForceFields::MMFF::MMFFStbn... Generating docs for compound ForceFields::MMFF::MMFFStbnCollection... Generating docs for compound ForceFields::MMFF::MMFFTor... Generating docs for compound ForceFields::MMFF::MMFFTorCollection... Generating docs for compound ForceFields::MMFF::MMFFVdW... Generating docs for compound ForceFields::MMFF::MMFFVdWCollection... Generating docs for compound ForceFields::MMFF::MMFFVdWRijstarEps... Generating docs for compound ForceFields::MMFF::OopBendContrib... Generating docs for compound ForceFields::MMFF::PositionConstraintContrib... Generating docs for compound ForceFields::MMFF::StretchBendContrib... Generating docs for compound ForceFields::MMFF::TorsionAngleContrib... Generating docs for compound ForceFields::MMFF::TorsionConstraintContrib... Generating docs for compound ForceFields::MMFF::VdWContrib... Generating docs for namespace ForceFields::MMFF::Utils Generating docs for namespace ForceFields::UFF Generating docs for compound ForceFields::UFF::AngleBendContrib... Generating docs for compound ForceFields::UFF::AngleConstraintContrib... Generating docs for compound ForceFields::UFF::AtomicParams... Generating docs for compound ForceFields::UFF::BondStretchContrib... Generating docs for compound ForceFields::UFF::DistanceConstraintContrib... Generating docs for comp/build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.h:39: warning: The following parameters of ForceFields::UFF::InversionContrib::InversionContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, int at2AtomicNum, bool isCBoundToO, double oobForceScalingFactor=1.0) are not documented: parameter 'oobForceScalingFactor' /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.h:28: warning: argument 'minDispl' of command @param is not found in the argument list of ForceFields::UFF::PositionConstraintContrib::PositionConstraintContrib(ForceField *owner, unsigned int idx, double maxDispl, double forceConst) /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:73: warning: The following parameters of RDDepict::compute2DCoords(RDKit::ROMol &mol, const RDGeom::INT_POINT2D_MAP *coordMap=0, bool canonOrient=false, bool clearConfs=true, unsigned int nFlipsPerSample=0, unsigned int nSamples=0, int sampleSeed=0, bool permuteDeg4Nodes=false, bool forceRDKit=false) are not documented: parameter 'forceRDKit' /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:130: warning: The following parameters of RDDepict::compute2DCoordsMimicDistMat(RDKit::ROMol &mol, const DOUBLE_SMART_PTR *dmat=0, bool canonOrient=true, bool clearConfs=true, double weightDistMat=0.5, unsigned int nFlipsPerSample=3, unsigned int nSamples=100, int sampleSeed=25, bool permuteDeg4Nodes=true, bool forceRDKit=false) are not documented: parameter 'forceRDKit' /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:162: warning: The following parameters of RDDepict::generateDepictionMatching2DStructure(RDKit::ROMol &mol, const RDKit::ROMol &reference, int confId=-1, RDKit::ROMol *referencePattern=static_cast< RDKit::ROMol * >(0), bool acceptFailure=false, bool forceRDKit=false) are not documented: parameter 'forceRDKit' /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:170: warning: argument 'refPattern' of command @param is not found in the argument list of RDDepict::generateDepictionMatching3DStructure(RDKit::ROMol &mol, const RDKit::ROMol &reference, int confId=-1, RDKit::ROMol *referencePattern=0, bool acceptFailure=false, bool forceRDKit=false) /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:189: warning: The following parameters of RDDepict::generateDepictionMatching3DStructure(RDKit::ROMol &mol, const RDKit::ROMol &reference, int confId=-1, RDKit::ROMol *referencePattern=0, bool acceptFailure=false, bool forceRDKit=false) are not documented: parameter 'referencePattern' parameter 'forceRDKit' /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:485: warning: Found unknown command `\overloadquery' /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:494: warning: Found unknown command `\overloadquery' /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h:94: warning: argument 'seq' of command @param is not found in the argument list of RDKit::HELMToMol(const char *helm, bool sanitize=true) /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h:99: warning: The following parameters of RDKit::HELMToMol(const char *helm, bool sanitize=true) are not documented: parameter 'helm' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h:105: warning: The following parameters of RDKit::LayeredFingerprintMol(const ROMol &mol, unsigned int layerFlags=0xFFFFFFFF, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, std::vector< unsigned int > *atomCounts=0, ExplicitBitVect *setOnlyBits=0, bool branchedPaths=true, const std::vector< boost::uint32_t > *fromAtoms=0) are not documented: parameter 'fromAtoms' /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:485: warning: Found unknown command `\overloadquery' /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:494: warning: Found unknown command `\overloadquery' /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParsers.h:267: warning: argument 'fName' of command @param is not found in the argument list of RDKit::MolToPDBFile(const ROMol &mol, const std::string &fname, int confId=-1, unsigned int flavor=0) /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParsers.h:278: warning: The following parameters of RDKit::MolToPDBFile(const ROMol &mol, const std::string &fname, int confId=-1, unsigned int flavor=0) are not documented: parameter 'fname' /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.h:71: warning: The following parameters of RDKit::MolToSmiles(const ROMol &mol, bool doIsomericSmiles=true, bool doKekule=false, int rootedAtAtom=-1, bool canonical=true, bool allBondsExplicit=false, bool allHsExplicit=false, bool doRandom=false) are not documented: parameter 'doRandom' /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:236: warning: argument 'delimiter' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:236: warning: argument 'comment' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:236: warning: argument 'nameColumn' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:236: warning: argument 'smartsColumn' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h:26: warning: argument 'useBondOrders' of command @param is not found in the argument list of RDKit::RDKFingerprintMol(const ROMol &mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=true, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=true, bool useBondOrder=true, std::vector< boost::uint32_t > *atomInvariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, std::vector< std::vector< boost::uint32_t > > *atomBits=0, std::map< boost::uint32_t, std::vector< std::vector< int > > > *bitInfo=0) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h:53: warning: The following parameters of RDKit::RDKFingerprintMol(const ROMol &mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=true, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=true, bool useBondOrder=true, std::vector< boost::uint32_t > *atomInvariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, std::vector< std::vector< boost::uint32_t > > *atomBits=0, std::map< boost::uint32_t, std::vector< std::vector< int > > > *bitInfo=0) are not documented: parameter 'useBondOrder' parameter 'bitInfo' /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h:96: warning: The following parameters of RDKit::reduceProductToSideChains(const ROMOL_SPTR &product, bool addDummyAtoms=true) are not documented: parameter 'product' /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:111: warning: argument 'useChirality' of command @param is not found in the argument list of RDKit::replaceCore(const ROMol &mol, const ROMol &core, const MatchVectType &matchVect, bool replaceDummies=true, bool labelByIndex=false, bool requireDummyMatch=false) /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h:64: warning: argument 'reactantTemplateIdx' of command @param is not found in the argument list of RDKit::run_Reactant(const ChemicalReaction &rxn, const ROMOL_SPTR &reactant, unsigned int reactantIdx) /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h:77: warning: The following parameters of RDKit::run_Reactant(const ChemicalReaction &rxn, const ROMOL_SPTR &reactant, unsigned int reactantIdx) are not documented: parameter 'rxn' parameter 'reactantIdx' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.h:107: warning: The following parameters of RDKit::AtomEnvironment::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const=0 are not documented: parameter 'AdditionalOutput' ound ForceFields::UFF::InversionContrib... Generating docs for compound ForceFields::UFF::ParamCollection... Generating docs for compound ForceFields::UFF::PositionConstraintContrib... Generating docs for compound ForceFields::UFF::TorsionAngleContrib... Generating docs for compound ForceFields::UFF::TorsionConstraintContrib... Generating docs for compound ForceFields::UFF::UFFAngle... Generating docs for compound ForceFields::UFF::UFFBond... Generating docs for compound ForceFields::UFF::UFFInv... Generating docs for compound ForceFields::UFF::UFFTor... Generating docs for compound ForceFields::UFF::UFFVdW... Generating docs for compound ForceFields::UFF::vdWContrib... Generating docs for namespace ForceFields::UFF::Params Generating docs for namespace ForceFields::UFF::Utils Generating docs for namespace Invar Generating docs for compound Invar::Invariant... Generating docs for namespace MolTransforms Generating docs for namespace Queries Generating docs for compound Queries::AndQuery... Generating docs for compound Queries::EqualityQuery... Generating docs for compound Queries::GreaterEqualQuery... Generating docs for compound Queries::GreaterQuery... Generating docs for compound Queries::Int2Type... Generating docs for compound Queries::LessEqualQuery... Generating docs for compound Queries::LessQuery... Generating docs for compound Queries::OrQuery... Generating docs for compound Queries::Query... Generating docs for compound Queries::RangeQuery... Generating docs for compound Queries::SetQuery... Generating docs for compound Queries::XOrQuery... Generating docs for namespace Rankers Generating docs for compound Rankers::argless... Generating docs for compound Rankers::pairGreater... Generating docs for compound Rankers::pairLess... Generating docs for namespace RDCatalog Generating docs for compound RDCatalog::Catalog... Generating docs for compound RDCatalog::CatalogEntry... Generating docs for compound RDCatalog::CatalogParams... Generating docs for compound RDCatalog::HierarchCatalog... Generating docs for nested compound RDCatalog::HierarchCatalog::vertex_entry_t... Generating docs for compound RDCatalog::LinearCatalog... Generating docs for namespace RDDataManip Generating docs for compound RDDataManip::MetricMatrixCalc... Generating docs for namespace RDDepict Generating docs for compound RDDepict::DepictException... Generating docs for compound RDDepict::EmbeddedAtom... Generating docs for compound RDDepict::EmbeddedFrag... Generating docs for compound RDDepict::gtIIPair... Generating docs for namespace RDFeatures Generating docs for compound RDFeatures::ExplicitFeature... Generating docs for compound RDFeatures::ImplicitFeature... Generating docs for namespace RDGeom Generating docs for compound RDGeom::Grid3D... Generating docs for compound RDGeom::GridException... Generating docs for compound RDGeom::Point... Generating docs for compound RDGeom::Point2D... Generating docs for compound RDGeom::Point3D... Generating docs for compound RDGeom::PointND... Generating docs for compound RDGeom::Transform2D... Generating docs for compound RDGeom::Transform3D... Generating docs for compound RDGeom::UniformGrid3D... Generating docs for namespace RDInfoTheory Generating docs for compound RDInfoTheory::BitCorrMatGenerator... Generating docs for compound RDInfoTheory::InfoBitRanker... Generating docs for namespace RDKit Generating docs for compound RDKit::AdditionalOutput... Generating docs for compound RDKit::AromaticAtomIterator_... Generating docs for compound RDKit::Atom... Generating docs for compound RDKit::AtomEnvironment... Generating docs for compound RDKit::AtomEnvironmentGenerator... Generating docs for compound RDKit::atomicData... Generating docs for compound RDKit::AtomInvariantsGenerator... Generating docs for compound RDKit::AtomIterator_... Generating docs for compound RDKit::AtomMonomerInfo... Generating docs for compound RDKit::AtomPDBResidueInfo... Generating docs for compound RDKit::AtomRingQuery... Generating docs for compound RDKit::BadFileException... Generating docs for compound RDKit::Bond... /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.h:207: warning: argument 'maxProducts' of command @param is not found in the argument list of RDKit::ChemicalReaction::runReactants(const MOL_SPTR_VECT reactants, unsigned int numProducts=1000) const /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.h:221: warning: The following parameters of RDKit::ChemicalReaction::runReactants(const MOL_SPTR_VECT reactants, unsigned int numProducts=1000) const are not documented: parameter 'numProducts' /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:415: warning: argument 'matches' of command @param is not found in the argument list of RDKit::ExclusionList::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:415: warning: The following parameters of RDKit::ExclusionList::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:100: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatcherBase::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const=0 /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:106: warning: The following parameters of RDKit::FilterMatcherBase::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const=0 are not documented: parameter 'matchVect' /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:176: warning: The following parameters of RDKit::MolDraw2D::drawMolecule(const ROMol &mol, const std::string &legend, const std::vector< int > *highlight_atoms, const std::vector< int > *highlight_bonds, const std::map< int, DrawColour > *highlight_atom_map=NULL, const std::map< int, DrawColour > *highlight_bond_map=NULL, const std::map< int, double > *highlight_radii=NULL, int confId=-1) are not documented: parameter 'highlight_bonds' /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:207: warning: argument 'highlight_atom_map' of command @param is not found in the argument list of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=NULL, const std::vector< std::vector< int > > *highlight_atoms=NULL, const std::vector< std::vector< int > > *highlight_bonds=NULL, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=NULL, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=NULL, const std::vector< std::map< int, double > > *highlight_radii=NULL, const std::vector< int > *confIds=NULL) /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:207: warning: argument 'highlight_bond_map' of command @param is not found in the argument list of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=NULL, const std::vector< std::vector< int > > *highlight_atoms=NULL, const std::vector< std::vector< int > > *highlight_bonds=NULL, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=NULL, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=NULL, const std::vector< std::map< int, double > > *highlight_radii=NULL, const std::vector< int > *confIds=NULL) /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:207: warning: argument 'confId' of command @param is not found in the argument list of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=NULL, const std::vector< std::vector< int > > *highlight_atoms=NULL, const std::vector< std::vector< int > > *highlight_bonds=NULL, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=NULL, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=NULL, const std::vector< std::map< int, double > > *highlight_radii=NULL, const std::vector< int > *confIds=NULL) /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:231: warning: The following parameters of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=NULL, const std::vector< std::vector< int > > *highlight_atoms=NULL, const std::vector< std::vector< int > > *highlight_bonds=NULL, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=NULL, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=NULL, const std::vector< std::map< int, double > > *highlight_radii=NULL, const std::vector< int > *confIds=NULL) are not documented: parameter 'highlight_bonds' parameter 'highlight_atom_maps' parameter 'highlight_bond_maps' parameter 'confIds' Generating docs for compound RDKit::BondInvariantsGenerator... Generating docs for compound RDKit::BondIterator_... Generating docs for compound RDKit::CachedMolHolder... Generating docs for compound RDKit::CachedSmilesMolHolder... Generating docs for compound RDKit::CachedTrustedSmilesMolHolder... Generating docs for compound RDKit::CartesianProductStrategy... Generating docs for compound RDKit::charptr_functor... Generating docs for compound RDKit::ChemicalReaction... Generating docs for compound RDKit::ChemicalReactionException... Generating docs for compound RDKit::ChemicalReactionParserException... Generating docs for compound RDKit::Conformer... Generating docs for compound RDKit::ConformerException... Generating docs for compound RDKit::ConstBondIterator_... Generating docs for compound RDKit::CXXAtomIterator... Generating docs for nested compound RDKit::CXXAtomIterator::CXXAtomIter... Generating docs for compound RDKit::CXXBondIterator... Generating docs for nested compound RDKit::CXXBondIterator::CXXBondIter... Generating docs for compound RDKit::Dict... Generating docs for nested compound RDKit::Dict::Pair... Generating docs for compound RDKit::DiscreteDistMat... Generating docs for compound RDKit::DiscreteValueVect... Generating docs for compound RDKit::EnumerateLibrary... Generating docs for compound RDKit::EnumerateLibraryBase... Generating docs for compound RDKit::EnumerationParams... Generating docs for compound RDKit::EnumerationStrategyBase... Generating docs for compound RDKit::EnumerationStrategyException... Generating docs for compound RDKit::EvenSamplePairsStrategy... Generating docs for compound RDKit::ExclusionList... Generating docs for compound RDKit::FeatureFileParseException... Generating docs for compound RDKit::FileParseException... Generating docs for compound RDKit::FilterCatalog... Generating docs for compound RDKit::FilterCatalogEntry... Generating docs for compound RDKit::FilterCatalogParams... Generating docs for compound RDKit::FilterData_t... Generating docs for compound RDKit::FilterHierarchyMatcher... Generating docs for compound RDKit::FilterMatch... Generating docs for compound RDKit::FilterMatcherBase... Generating docs for compound RDKit::FilterProperty_t... Generating docs for compound RDKit::FingerprintArguments... Generating docs for compound RDKit::FingerprintGenerator... Generating docs for compound RDKit::ForwardSDMolSupplier... Generating docs for compound RDKit::FPBReader... Generating docs for compound RDKit::FPHolderBase... Generating docs for compound RDKit::FragCatalogEntry... Generating docs for compound RDKit::FragCatGenerator... Generating docs for compound RDKit::FragCatParams... Generating docs for compound RDKit::FragFPGenerator... Generating docs for compound RDKit::GasteigerParams... Generating docs for compound RDKit::HasPropQuery... Generating docs for compound RDKit::HasPropWithValueQuery... Generating docs for compound RDKit::HasPropWithValueQuery< TargetPtr, std::string >... Generating docs for compound RDKit::HeteroatomIterator_... Generating docs for compound RDKit::larger_of... Generating docs for compound RDKit::ltDouble... Generating docs for compound RDKit::MatchingAtomIterator_... Generating docs for compound RDKit::MCSAtomCompareParameters... Generating docs for compound RDKit::MCSBondCompareParameters... Generating docs for compound RDKit::MCSParameters... Generating docs for compound RDKit::MCSProgressData... Generating docs for compound RDKit::MCSResult... Generating docs for compound RDKit::MolBundle... Generating docs for compound RDKit::MolCatalogEntry... Generating docs for compound RDKit::MolCatalogParams... Generating docs for compound RDKit::MolChemicalFeature... Generating docs for compound RDKit::MolChemicalFeatureDef... Generating docs for compound RDKit::MolChemicalFeatureFactory... Generating docs for compound RDKit::MolDraw2D... Generating docs for compound RDKit::MolDraw2DCairo... Generating docs for compound RDKit::MolDraw2DQt... Generating docs for compound RDKit::MolDraw2DSVG... Generating docs for compound RDKit::MolDraw2Dwx./build/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.h:56: warning: argument 'numThreads' of command @param is not found in the argument list of RDKit::ResonanceMolSupplier::ResonanceMolSupplier(ROMol &mol, unsigned int flags=0, unsigned int maxStructs=1000) /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:322: warning: argument 'matches' of command @param is not found in the argument list of RDKit::SmartsMatcher::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:322: warning: The following parameters of RDKit::SmartsMatcher::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'delimiter' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'smilesColumn' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'nameColumn' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'titleLine' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'sanitize' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.h:103: warning: The following parameters of RDKit::AtomPair::AtomPairAtomEnv::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const are not documented: parameter 'AdditionalOutput' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.h:121: warning: The following parameters of RDKit::AtomPairs::getHashedAtomPairFingerprint(const ROMol &mol, unsigned int nBits=2048, unsigned int minLength=1, unsigned int maxLength=maxPathLen - 1, const std::vector< boost::uint32_t > *fromAtoms=0, const std::vector< boost::uint32_t > *ignoreAtoms=0, const std::vector< boost::uint32_t > *atomInvariants=0, bool includeChirality=false, bool use2D=true, int confId=-1) are not documented: parameter 'confId' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.h:77: warning: The following parameters of RDKit::AtomPairs::getTopologicalTorsionCode(const std::vector< std::uint32_t > &atomCodes, bool includeChirality=false) are not documented: parameter 'includeChirality' /build/rdkit-201809.1+dfsg/Code/GraphMol/Canon.h:113: warning: The following parameters of RDKit::Canon::canonicalizeFragment(ROMol &mol, int atomIdx, std::vector< AtomColors > &colors, const std::vector< unsigned int > &ranks, MolStack &molStack, const boost::dynamic_bitset<> *bondsInPlay=0, const std::vector< std::string > *bondSymbols=0, bool doIsomericSmiles=false, bool doRandom=false) are not documented: parameter 'bondsInPlay' parameter 'bondSymbols' parameter 'doIsomericSmiles' parameter 'doRandom' /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.h:45: warning: argument 'strict' of command @param is not found in the argument list of RDKit::Descriptors::calcNumRotatableBonds(const ROMol &mol, NumRotatableBondsOptions useStrictDefinition=Default) /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.h:52: warning: The following parameters of RDKit::Descriptors::calcNumRotatableBonds(const ROMol &mol, NumRotatableBondsOptions useStrictDefinition=Default) are not documented: parameter 'useStrictDefinition' /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.h:79: warning: The following parameters of RDKit::Descriptors::USRCAT(const ROMol &mol, std::vector< double > &descriptor, std::vector< std::vector< unsigned int >> &atomIds, int confId=-1) are not documented: parameter 'atomIds' .. Generating docs for compound RDKit::MolDrawOptions... Generating docs for compound RDKit::MolHolder... Generating docs for compound RDKit::MolHolderBase... Generating docs for compound RDKit::MolPickler... Generating docs for compound RDKit::MolPicklerException... Generating docs for compound RDKit::MolSanitizeException... Generating docs for compound RDKit::MolSupplier... Generating docs for compound RDKit::MolWriter... Generating docs for compound RDKit::MultiFPBReader... Generating docs for compound RDKit::MultiMolDraw2D... Generating docs for compound RDKit::PatternHolder... Generating docs for compound RDKit::PDBMolSupplier... Generating docs for compound RDKit::PDBWriter... Generating docs for compound RDKit::PeriodicTable... Generating docs for compound RDKit::QueryAtom... Generating docs for compound RDKit::QueryAtomIterator_... Generating docs for compound RDKit::QueryBond... Generating docs for compound RDKit::RandomSampleAllBBsStrategy... Generating docs for compound RDKit::RandomSampleStrategy... Generating docs for compound RDKit::RDAny... Generating docs for compound RDKit::RDProps... Generating docs for compound RDKit::RDValue... Generating docs for compound RDKit::ReactionFingerprintParams... Generating docs for compound RDKit::ReactionPickler... Generating docs for compound RDKit::ReactionPicklerException... Generating docs for compound RDKit::RecursiveStructureQuery... Generating docs for compound RDKit::ResonanceMolSupplier... Generating docs for compound RDKit::RGroupDecomposition... Generating docs for compound RDKit::RGroupDecompositionParameters... Generating docs for compound RDKit::RingInfo... Generating docs for compound RDKit::ROMol... Generating docs for compound RDKit::RWMol... Generating docs for compound RDKit::RxnSanitizeException... Generating docs for compound RDKit::SDMolSupplier... Generating docs for compound RDKit::SDWriter... Generating docs for compound RDKit::SLNParseException... Generating docs for compound RDKit::SmartsMatcher... Generating docs for compound RDKit::SmilesMolSupplier... Generating docs for compound RDKit::SmilesParseException... Generating docs for compound RDKit::SmilesParserParams... Generating docs for compound RDKit::SmilesWriter... Generating docs for compound RDKit::Snapshot... Generating docs for compound RDKit::SparseIntVect... Generating docs for compound RDKit::StereoGroup... Generating docs for compound RDKit::SubstructLibrary... Generating docs for compound RDKit::TDTMolSupplier... Generating docs for compound RDKit::TDTWriter... Generating docs for compound RDKit::Trajectory... Generating docs for compound RDKit::UnimplementedFPException... Generating docs for namespace RDKit::AtomPair Generating docs for compound RDKit::AtomPair::AtomPairArguments... Generating docs for compound RDKit::AtomPair::AtomPairAtomEnv... Generating docs for compound RDKit::AtomPair::AtomPairAtomInvGenerator... Generating docs for compound RDKit::AtomPair::AtomPairEnvGenerator... Generating docs for namespace RDKit::AtomPairs Generating docs for namespace RDKit::Canon Generating docs for compound RDKit::Canon::AtomCompareFunctor... Generating docs for compound RDKit::Canon::bondholder... Generating docs for compound RDKit::Canon::canon_atom... Generating docs for compound RDKit::Canon::ChiralAtomCompareFunctor... Generating docs for compound RDKit::Canon::MolStackElem... Generating docs for compound RDKit::Canon::MolStackUnion... Generating docs for compound RDKit::Canon::SpecialChiralityAtomCompareFunctor... Generating docs for compound RDKit::Canon::SpecialSymmetryAtomCompareFunctor... Generating docs for namespace RDKit::common_properties Generating docs for namespace RDKit::constants Generating docs for namespace RDKit::Descriptors Generating docs for compound RDKit::Descriptors::CrippenParamCollection... Generating docs for compound RDKit::Descriptors::CrippenParams... Generating docs for compound RDKit::Descriptors::Properties... Generating docs for compound RDKit::Descriptors::PropertyFunctor... Generating docs for namespace RDKit::Descriptors::detail Generating d/build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:86: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::And::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:86: warning: The following parameters of RDKit::FilterMatchOps::And::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:204: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::Not::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:204: warning: The following parameters of RDKit::FilterMatchOps::Not::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:148: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::Or::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:148: warning: The following parameters of RDKit::FilterMatchOps::Or::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.h:36: warning: The following parameters of RDKit::MMPA::fragmentMol(const ROMol &mol, std::vector< std::pair< ROMOL_SPTR, ROMOL_SPTR > > &result, unsigned int maxCuts=3, unsigned int maxCutBonds=20, const std::string &pattern="[#6+0;!$(*=,#[!#6])]!@!=!#[*]") are not documented: parameter 'pattern' /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.h:57: warning: The following parameters of RDKit::MMPA::fragmentMol(const ROMol &mol, std::vector< std::pair< ROMOL_SPTR, ROMOL_SPTR > > &result, unsigned int minCuts, unsigned int maxCuts, unsigned int maxCutBonds, const std::string &pattern="[#6+0;!$(*=,#[!#6])]!@!=!#[*]") are not documented: parameter 'pattern' /build/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.h:645: warning: The following parameters of RDKit::MolOps::getAdjacencyMatrix(const ROMol &mol, bool useBO=false, int emptyVal=0, bool force=false, const char *propNamePrefix=0, const boost::dynamic_bitset<> *bondsToUse=0) are not documented: parameter 'bondsToUse' /build/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.h:257: warning: The following parameters of RDKit::MolOps::mergeQueryHs(const ROMol &mol, bool mergeUnmappedOnly=false) are not documented: parameter 'mergeUnmappedOnly' ocs for namespace RDKit::detail Generating docs for namespace RDKit::DGeomHelpers Generating docs for compound RDKit::DGeomHelpers::EmbedParameters... Generating docs for namespace RDKit::DTags Generating docs for namespace RDKit::EnumerationStrategyPickler Generating docs for namespace RDKit::EnumerationTypes Generating docs for namespace RDKit::FileParserUtils Generating docs for namespace RDKit::FilterMatchOps Generating docs for compound RDKit::FilterMatchOps::And... Generating docs for compound RDKit::FilterMatchOps::Not... Generating docs for compound RDKit::FilterMatchOps::Or... Generating docs for namespace RDKit::FMCS Generating docs for compound RDKit::FMCS::Composition2N... Generating docs for compound RDKit::FMCS::DuplicatedSeedCache... Generating docs for nested compound RDKit::FMCS::DuplicatedSeedCache::TKey... Generating docs for compound RDKit::FMCS::ExecStatistics... Generating docs for compound RDKit::FMCS::Graph... Generating docs for compound RDKit::FMCS::MaximumCommonSubgraph... Generating docs for compound RDKit::FMCS::MolFragment... Generating docs for compound RDKit::FMCS::NewBond... Generating docs for compound RDKit::FMCS::RingMatchTableSet... Generating docs for compound RDKit::FMCS::Seed... Generating docs for compound RDKit::FMCS::SeedSet... Generating docs for compound RDKit::FMCS::SubstructureCache... Generating docs for nested compound RDKit::FMCS::SubstructureCache::HashKey... Generating docs for nested compound RDKit::FMCS::SubstructureCache::KeyNumericMetrics... Generating docs for compound RDKit::FMCS::Target... Generating docs for compound RDKit::FMCS::TargetMatch... Generating docs for compound RDKit::FMCS::TArray2D... Generating docs for namespace RDKit::Local Generating docs for namespace RDKit::MACCSFingerprints Generating docs for namespace RDKit::MMFF Generating docs for compound RDKit::MMFF::MMFFAtomProperties... Generating docs for compound RDKit::MMFF::MMFFMolProperties... Generating docs for namespace RDKit::MMFF::Tools Generating docs for compound RDKit::MMFF::Tools::DefaultTorsionBondSmarts... Generating docs for namespace RDKit::MMPA Generating docs for namespace RDKit::MolAlign Generating docs for compound RDKit::MolAlign::LAP... Generating docs for compound RDKit::MolAlign::MolAlignException... Generating docs for compound RDKit::MolAlign::MolHistogram... Generating docs for compound RDKit::MolAlign::O3A... Generating docs for compound RDKit::MolAlign::O3AConstraint... Generating docs for compound RDKit::MolAlign::O3AConstraintVect... Generating docs for compound RDKit::MolAlign::O3AFuncData... Generating docs for compound RDKit::MolAlign::SDM... Generating docs for namespace RDKit::MolDraw2D_detail Generating docs for namespace RDKit::MolDraw2DUtils Generating docs for namespace RDKit::MolFragmenter Generating docs for compound RDKit::MolFragmenter::FragmenterBondType... Generating docs for namespace RDKit::MolHash Generating docs for compound RDKit::MolHash::HashSet... Generating docs for namespace RDKit::MolInterchange Generating docs for compound RDKit::MolInterchange::JSONParseParameters... Generating docs for namespace RDKit::MolOps Generating docs for compound RDKit::MolOps::AdjustQueryParameters... Generating docs for namespace RDKit::MolShapes Generating docs for namespace RDKit::MolStandardize Generating docs for compound RDKit::MolStandardize::AcidBaseCatalogEntry... Generating docs for compound RDKit::MolStandardize::AcidBaseCatalogParams... Generating docs for compound RDKit::MolStandardize::AllowedAtomsValidation... Generating docs for compound RDKit::MolStandardize::ChargeCorrection... Generating docs for compound RDKit::MolStandardize::CleanupParameters... Generating docs for compound RDKit::MolStandardize::DisallowedAtomsValidation... Generating docs for compound RDKit::MolStandardize::FragmentCatalogEntry... Generating docs for compound RDKit::MolStandardize::FragmentCatalogParams... Generating docs for compound RDKit::MolStandardize::FragmentRemover... Generating docs for compound RDKit::MolStandardize::FragmentValidation... Generating docs for compou/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h:189: warning: argument 'OutputType' of command @param is not found in the argument list of RDKit::MorganFingerprint::getMorganGenerator(const unsigned int radius, const bool countSimulation=true, const bool includeChirality=false, const bool useBondTypes=true, const bool onlyNonzeroInvariants=false, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, BondInvariantsGenerator *bondInvariantsGenerator=nullptr, const std::uint32_t fpSize=2048, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const bool ownsAtomInvGen=false, const bool ownsBondInvGen=false) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h:189: warning: argument 'radiu' of command @param is not found in the argument list of RDKit::MorganFingerprint::getMorganGenerator(const unsigned int radius, const bool countSimulation=true, const bool includeChirality=false, const bool useBondTypes=true, const bool onlyNonzeroInvariants=false, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, BondInvariantsGenerator *bondInvariantsGenerator=nullptr, const std::uint32_t fpSize=2048, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const bool ownsAtomInvGen=false, const bool ownsBondInvGen=false) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h:228: warning: The following parameters of RDKit::MorganFingerprint::getMorganGenerator(const unsigned int radius, const bool countSimulation=true, const bool includeChirality=false, const bool useBondTypes=true, const bool onlyNonzeroInvariants=false, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, BondInvariantsGenerator *bondInvariantsGenerator=nullptr, const std::uint32_t fpSize=2048, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const bool ownsAtomInvGen=false, const bool ownsBondInvGen=false) are not documented: parameter 'radius' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h:151: warning: The following parameters of RDKit::MorganFingerprint::MorganAtomEnv::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const are not documented: parameter 'AdditionalOutput' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.h:152: warning: The following parameters of RDKit::MorganFingerprints::getHashedFingerprint(const ROMol &mol, unsigned int radius, unsigned int nBits=2048, std::vector< boost::uint32_t > *invariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, bool useChirality=false, bool useBondTypes=true, bool onlyNonzeroInvariants=false, BitInfoMap *atomsSettingBits=0) are not documented: parameter 'nBits' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:109: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::RDKitFP::getRDKitFPGenerator(const unsigned int minPath=1, const unsigned int maxPath=7, const bool useHs=true, const bool branchedPaths=true, const bool useBondOrder=true, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048, const bool ownsAtomInvGen=false) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:133: warning: The following parameters of RDKit::RDKitFP::getRDKitFPGenerator(const unsigned int minPath=1, const unsigned int maxPath=7, const bool useHs=true, const bool branchedPaths=true, const bool useBondOrder=true, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048, const bool ownsAtomInvGen=false) are not documented: parameter 'countSimulation' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:35: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::RDKitFP::RDKitFPArguments< OutputType >::RDKitFPArguments(unsigned int minPath, unsigned int maxPath, bool useHs, bool branchedPaths, bool useBondOrder, const bool countSimulation, const std::vector< std::uint32_t > countBounds, const std::uint32_t fpSize) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:52: warning: The following parameters of RDKit::RDKitFP::RDKitFPArguments::RDKitFPArguments(unsigned int minPath, unsigned int maxPath, bool useHs, bool branchedPaths, bool useBondOrder, const bool countSimulation, const std::vector< std::uint32_t > countBounds, const std::uint32_t fpSize) are not documented: parameter 'countSimulation' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:75: warning: The following parameters of RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const are not documented: parameter 'AdditionalOutput' /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.h:34: warning: The following parameters of RDKit::ReducedGraphs::generateMolExtendedReducedGraph(const ROMol &mol, std::vector< boost::dynamic_bitset<> > *atomTypes=0) are not documented: parameter 'atomTypes' /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.h:124: warning: argument 'operationThatFailed' of command @param is not found in the argument list of RDKit::RxnOps::sanitizeRxn(ChemicalReaction &rxn, unsigned int &operationsThatFailed, unsigned int sanitizeOps=SANITIZE_ALL, const MolOps::AdjustQueryParameters ¶ms=DefaultRxnAdjustParams()) /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.h:155: warning: The following parameters of RDKit::RxnOps::sanitizeRxn(ChemicalReaction &rxn, unsigned int &operationsThatFailed, unsigned int sanitizeOps=SANITIZE_ALL, const MolOps::AdjustQueryParameters ¶ms=DefaultRxnAdjustParams()) are not documented: parameter 'operationsThatFailed' parameter 'params' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:87: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(const bool includeChirality=false, const uint32_t torsionAtomCount=4, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048, const bool ownsAtomInvGen=false) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:108: warning: The following parameters of RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(const bool includeChirality=false, const uint32_t torsionAtomCount=4, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048, const bool ownsAtomInvGen=false) are not documented: parameter 'countSimulation' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:33: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::TopologicalTorsion::TopologicalTorsionArguments< OutputType >::TopologicalTorsionArguments(const bool includeChirality, const uint32_t torsionAtomCount, const bool countSimulation, const std::vector< std::uint32_t > countBounds, const std::uint32_t fpSize) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:44: warning: The following parameters of RDKit::TopologicalTorsion::TopologicalTorsionArguments::TopologicalTorsionArguments(const bool includeChirality, const uint32_t torsionAtomCount, const bool countSimulation, const std::vector< std::uint32_t > countBounds, const std::uint32_t fpSize) are not documented: parameter 'countSimulation' nd RDKit::MolStandardize::IsotopeValidation... Generating docs for compound RDKit::MolStandardize::LargestFragmentChooser... Generating docs for nested compound RDKit::MolStandardize::LargestFragmentChooser::Largest... Generating docs for compound RDKit::MolStandardize::MetalDisconnector... Generating docs for compound RDKit::MolStandardize::MolVSValidation... Generating docs for compound RDKit::MolStandardize::MolVSValidations... Generating docs for compound RDKit::MolStandardize::NeutralValidation... Generating docs for compound RDKit::MolStandardize::NoAtomValidation... Generating docs for compound RDKit::MolStandardize::Normalizer... Generating docs for nested compound RDKit::MolStandardize::Normalizer::Product... Generating docs for compound RDKit::MolStandardize::RDKitValidation... Generating docs for compound RDKit::MolStandardize::Reionizer... Generating docs for compound RDKit::MolStandardize::TautomerCanonicalizer... Generating docs for compound RDKit::MolStandardize::TautomerCatalogEntry... Generating docs for compound RDKit::MolStandardize::TautomerCatalogParams... Generating docs for compound RDKit::MolStandardize::TautomerEnumerator... Generating docs for compound RDKit::MolStandardize::TautomerTransform... Generating docs for compound RDKit::MolStandardize::TransformCatalogEntry... Generating docs for compound RDKit::MolStandardize::TransformCatalogParams... Generating docs for compound RDKit::MolStandardize::Uncharger... Generating docs for compound RDKit::MolStandardize::ValidationErrorInfo... Generating docs for compound RDKit::MolStandardize::ValidationMethod... Generating docs for namespace RDKit::MorganFingerprint Generating docs for compound RDKit::MorganFingerprint::MorganArguments... Generating docs for compound RDKit::MorganFingerprint::MorganAtomEnv... Generating docs for compound RDKit::MorganFingerprint::MorganAtomInvGenerator... Generating docs for compound RDKit::MorganFingerprint::MorganBondInvGenerator... Generating docs for compound RDKit::MorganFingerprint::MorganEnvGenerator... Generating docs for compound RDKit::MorganFingerprint::MorganFeatureAtomInvGenerator... Generating docs for namespace RDKit::MorganFingerprints Generating docs for compound RDKit::MorganFingerprints::ss_matcher... Generating docs for namespace RDKit::PicklerOps Generating docs for namespace RDKit::RDKitFP Generating docs for compound RDKit::RDKitFP::RDKitFPArguments... Generating docs for compound RDKit::RDKitFP::RDKitFPAtomEnv... Generating docs for compound RDKit::RDKitFP::RDKitFPAtomInvGenerator... Generating docs for compound RDKit::RDKitFP::RDKitFPEnvGenerator... Generating docs for namespace RDKit::RDKitFPUtils Generating docs for namespace RDKit::RDTypeTag Generating docs for namespace RDKit::RDTypeTag::detail Generating docs for compound RDKit::RDTypeTag::detail::Value... Generating docs for namespace RDKit::ReactionRunnerUtils Generating docs for namespace RDKit::ReducedGraphs Generating docs for namespace RDKit::RxnOps Generating docs for namespace RDKit::SLNParse Generating docs for compound RDKit::SLNParse::AttribType... Generating docs for namespace RDKit::SmartsWrite Generating docs for namespace RDKit::SmilesWrite Generating docs for namespace RDKit::StructureCheck Generating docs for compound RDKit::StructureCheck::AugmentedAtom... Generating docs for compound RDKit::StructureCheck::ChargeFix... Generating docs for compound RDKit::StructureCheck::IncEntry... Generating docs for compound RDKit::StructureCheck::Ligand... Generating docs for compound RDKit::StructureCheck::Neighbourhood... Generating docs for compound RDKit::StructureCheck::PathEntry... Generating docs for compound RDKit::StructureCheck::StructChecker... Generating docs for compound RDKit::StructureCheck::StructCheckerOptions... Generating docs for compound RDKit::StructureCheck::StructCheckTautomer... Generating docs for namespace RDKit::Subgraphs Generating docs for namespace RDKit::TopologicalTorsion Generating docs for compound RDKit::TopologicalTorsion::TopologicalTorsionArguments... Generating docs for compound RDKit::Topologic/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:57: warning: The following parameters of RDKit::TopologicalTorsion::TopologicalTorsionAtomEnv::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const are not documented: parameter 'AdditionalOutput' /build/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.h:80: warning: The following parameters of RDPickers::HierarchicalClusterPicker::pick(const double *distMat, unsigned int poolSize, unsigned int pickSize) const are not documented: parameter 'distMat' /build/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.h:54: warning: argument 'firstPicks' of command @param is not found in the argument list of RDPickers::MaxMinPicker::lazyPick(T &func, unsigned int poolSize, unsigned int pickSize) const /build/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.h:54: warning: argument 'seed' of command @param is not found in the argument list of RDPickers::MaxMinPicker::lazyPick(T &func, unsigned int poolSize, unsigned int pickSize) const alTorsion::TopologicalTorsionAtomEnv... Generating docs for compound RDKit::TopologicalTorsion::TopologicalTorsionEnvGenerator... Generating docs for namespace RDKit::UFF Generating docs for namespace RDKit::UFF::Tools Generating docs for compound RDKit::UFF::Tools::DefaultTorsionBondSmarts... Generating docs for namespace RDKit::Utils Generating docs for compound RDKit::Utils::LocaleSwitcher... Generating docs for namespace RDKit::Utils::detail Generating docs for namespace RDLog Generating docs for namespace RDNumeric Generating docs for compound RDNumeric::Matrix... Generating docs for compound RDNumeric::SquareMatrix... Generating docs for compound RDNumeric::SymmMatrix... Generating docs for compound RDNumeric::Vector... Generating docs for namespace RDNumeric::Alignments Generating docs for namespace RDNumeric::EigenSolvers Generating docs for namespace RDPickers Generating docs for compound RDPickers::DistPicker... Generating docs for compound RDPickers::HierarchicalClusterPicker... Generating docs for compound RDPickers::MaxMinPicker... Generating docs for compound RDPickers::MaxMinPickInfo... Generating docs for namespace RingUtils Generating docs for namespace SmilesParseOps Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... lookup cache used 15926/65536 hits=133999 misses=17233 finished... (cd /build/rdkit-201809.1+dfsg/Docs/Book; RDBASE=/build/rdkit-201809.1+dfsg /usr/bin/make html) make[2]: Entering directory '/build/rdkit-201809.1+dfsg/Docs/Book' mkdir -p _build/html/cppapi cp -r /build/rdkit-201809.1+dfsg/Code/docs/* _build/html/cppapi sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v1.8.4 building [mo]: targets for 0 po files that are out of date building [html]: targets for 296 source files that are out of date updating environment: 296 added, 0 changed, 0 removed reading sources... [ 0%] BackwardsIncompatibleChanges reading sources... [ 0%] Cartridge reading sources... [ 1%] Cookbook reading sources... [ 1%] GettingStartedInPython reading sources... [ 1%] Install reading sources... [ 2%] Overview reading sources... [ 2%] RDKit_Book reading sources... [ 2%] api-docs reading sources... [ 3%] index reading sources... [ 3%] source/modules reading sources... [ 3%] source/rdkit reading sources... [ 4%] source/rdkit.Avalon reading sources... 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[100%] source/rdkit.utils.spiral /usr/lib/python3/dist-packages/recommonmark/parser.py:280: UserWarning: Unsupported inline type Hardbreak warn("Unsupported inline type " + inline.t) /build/rdkit-201809.1+dfsg/Docs/Book/GettingStartedInPython.rst:2720: WARNING: Block quote ends without a blank line; unexpected unindent. /build/rdkit-201809.1+dfsg/Docs/Book/GettingStartedInPython.rst:2729: WARNING: Unexpected indentation. WARNING: autodoc: failed to import module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Avalon' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Avalon.pyAvalonTools' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AllChem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Pairs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Sheridan' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Torsions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.BRICS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.BuildFragmentCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.AlignDepict' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.BulkTester' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.DescriptorUtilities' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.SDFToCSV' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.TemplateExpand' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemicalForceFields' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Crippen' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.DSViewer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Descriptors3D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.IPythonConsole' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.MolDrawing' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.SimilarityMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.aggCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.cairoCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.canvasbase' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.mplCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.qtCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.rdMolDraw2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.AtomTypes' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.EState' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.EState_VSA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.Fingerprinter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EnumerateHeterocycles' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EnumerateStereoisomers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FastSDMolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatFinderCLI' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapParser' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapPoint' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features.FeatDirUtilsRD' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features.ShowFeats' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FilterCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.ClusterMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.DbFpSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.FingerprintMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.MolSimilarity' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.SimilarityScreener' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fraggle' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fraggle.FraggleSim' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FragmentCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FragmentMatcher' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fragments' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FunctionalGroups' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.GraphDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Graphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Lipinski' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MACCSkeys' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MCS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.FingerprintUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_orig' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_sa' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey.InchiInfo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey.MolKey' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolStandardize.rdMolStandardize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolSurf' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PandasTools' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PeriodicTable' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Generate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Gobbi_Pharm2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.LazyGenerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Matcher' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.SigFactory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.EmbedLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.ExcludedVolume' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.Pharmacophore' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PropertyMol' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PyMol' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.QED' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Randomize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Recap' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ReducedGraphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SATIS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SaltRemover' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds.MurckoScaffold' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds.ScaffoldTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ShowMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SimpleEnum' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SimpleEnum.Enumerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.BuilderUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeAligner' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeBuilder' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeObjects' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.testCombined' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers.DbMolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers.MolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.TemplateAlign' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.TorsionFingerprints' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.fmcs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.fmcs.fmcs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.inchi' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdChemReactions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst:2: WARNING: Title underline too short. rdkit.Chem.rdChemicalFeatures module ================================= WARNING: autodoc: failed to import module 'Chem.rdChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdCoordGen' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdDepictor' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdDistGeom' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFMCS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFingerprintGenerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst:2: WARNING: Title underline too short. rdkit.Chem.rdForceFieldHelpers module ================================= WARNING: autodoc: failed to import module 'Chem.rdForceFieldHelpers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFreeSASA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMMPA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolAlign' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolChemicalFeatures module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolDescriptors module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolHash' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolInterchange module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolInterchange' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolTransforms' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst:2: WARNING: Title underline too short. rdkit.Chem.rdPartialCharges module ================================= WARNING: autodoc: failed to import module 'Chem.rdPartialCharges' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst:2: WARNING: Title underline too short. rdkit.Chem.rdRGroupDecomposition module ================================= WARNING: autodoc: failed to import module 'Chem.rdRGroupDecomposition' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdReducedGraphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdSLNParse' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdShapeHelpers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdStructChecker' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst:2: WARNING: Title underline too short. rdkit.Chem.rdSubstructLibrary module ================================= WARNING: autodoc: failed to import module 'Chem.rdSubstructLibrary' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdchem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdfiltercatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdfragcatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdinchi' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdmolfiles' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdmolops' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdqueries' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdtrajectory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataManip' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataManip.Metric' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitEnsemble' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitEnsembleDb' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.HierarchyVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.LazySignature' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.TopNContainer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.VectCollection' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbConnection' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbInfo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbModule' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbReport' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbResultSet' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.StorageUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DistanceGeometry' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ForceField' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Geometry' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.AnalyzeComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.BuildComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Butina' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.ClusterUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.ClusterVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Clusters' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Murtagh' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Resemblance' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Standardize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.murtagh_test' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.AdjustComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.BayesComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.Composite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.CompositeRun' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.DataUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.FindQuantBounds' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.MLData' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Quantize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.SplitData' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Stats' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Transforms' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.BuildQuantTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.BuildSigTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.DecTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.Forest' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.ID3' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.PruneTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.QuantTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.SigTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.Tree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.TreeUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.TreeVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.randomtest' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.CompoundDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.MoleculeDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.Parser' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.EnrichPlot' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.GrowComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.BitClusterer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.BitRank' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.entropy' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.DistFunctions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNClassificationModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNRegressionModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MLUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MLUtils.VoteImg' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MatOps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage.PackageUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage.Packager' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes.ClassificationModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.ActFuncs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.NetNode' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.Network' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.Trainers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.SLT' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.SLT.Risk' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Scoring' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Scoring.Scoring' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ScreenComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.files' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Numerics' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDConfig' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDLogger' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDPaths' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDRandom' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'SimDivFilters' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'SimDivFilters.SimilarityPickers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'TestRunner' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Filter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Node' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.DbMolSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.DbPickleSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SDSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsMolFilter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsRemover' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesDupeFilter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesOutput' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.demo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Output' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Supply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Transform' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'six' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.cactvs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemdraw' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemdraw_qax' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.comhack' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.fileutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.listutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.spiral' from module 'rdkit'; the following exception was raised: No module named 'rdkit' looking for now-outdated files... none found pickling environment... done checking consistency... /build/rdkit-201809.1+dfsg/Docs/Book/source/modules.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... 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WARNING: html_static_path entry '/build/rdkit-201809.1+dfsg/Docs/Book/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 297 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/Docs/Book' (cd /build/rdkit-201809.1+dfsg/Docs/Book; RDBASE=/build/rdkit-201809.1+dfsg /usr/bin/make latexpdf) make[2]: Entering directory '/build/rdkit-201809.1+dfsg/Docs/Book' mkdir -p _build/html/cppapi cp -r /build/rdkit-201809.1+dfsg/Code/docs/* _build/html/cppapi sphinx-build -b latex -d _build/doctrees . _build/latex Running Sphinx v1.8.4 making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 296 added, 0 changed, 0 removed reading sources... 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WARNING: autodoc: failed to import module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Avalon' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Avalon.pyAvalonTools' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AllChem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Pairs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Sheridan' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Torsions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.BRICS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.BuildFragmentCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.AlignDepict' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.BulkTester' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.DescriptorUtilities' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.SDFToCSV' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.TemplateExpand' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemicalForceFields' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Crippen' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.DSViewer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Descriptors3D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.IPythonConsole' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.MolDrawing' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.SimilarityMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.aggCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.cairoCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.canvasbase' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.mplCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.qtCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.rdMolDraw2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.AtomTypes' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.EState' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.EState_VSA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.Fingerprinter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EnumerateHeterocycles' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EnumerateStereoisomers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FastSDMolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatFinderCLI' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapParser' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapPoint' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features.FeatDirUtilsRD' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features.ShowFeats' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FilterCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.ClusterMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.DbFpSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.FingerprintMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.MolSimilarity' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.SimilarityScreener' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fraggle' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fraggle.FraggleSim' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FragmentCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FragmentMatcher' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fragments' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FunctionalGroups' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.GraphDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Graphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Lipinski' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MACCSkeys' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MCS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.FingerprintUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_orig' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_sa' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey.InchiInfo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey.MolKey' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolStandardize.rdMolStandardize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolSurf' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PandasTools' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PeriodicTable' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Generate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Gobbi_Pharm2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.LazyGenerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Matcher' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.SigFactory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.EmbedLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.ExcludedVolume' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.Pharmacophore' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PropertyMol' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PyMol' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.QED' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Randomize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Recap' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ReducedGraphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SATIS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SaltRemover' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds.MurckoScaffold' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds.ScaffoldTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ShowMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SimpleEnum' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SimpleEnum.Enumerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.BuilderUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeAligner' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeBuilder' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeObjects' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.testCombined' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers.DbMolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers.MolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.TemplateAlign' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.TorsionFingerprints' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.fmcs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.fmcs.fmcs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.inchi' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdChemReactions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst:2: WARNING: Title underline too short. rdkit.Chem.rdChemicalFeatures module ================================= WARNING: autodoc: failed to import module 'Chem.rdChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdCoordGen' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdDepictor' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdDistGeom' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFMCS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFingerprintGenerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst:2: WARNING: Title underline too short. rdkit.Chem.rdForceFieldHelpers module ================================= WARNING: autodoc: failed to import module 'Chem.rdForceFieldHelpers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFreeSASA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMMPA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolAlign' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolChemicalFeatures module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolDescriptors module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolHash' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolInterchange module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolInterchange' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolTransforms' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst:2: WARNING: Title underline too short. rdkit.Chem.rdPartialCharges module ================================= WARNING: autodoc: failed to import module 'Chem.rdPartialCharges' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst:2: WARNING: Title underline too short. rdkit.Chem.rdRGroupDecomposition module ================================= WARNING: autodoc: failed to import module 'Chem.rdRGroupDecomposition' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdReducedGraphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdSLNParse' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdShapeHelpers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdStructChecker' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst:2: WARNING: Title underline too short. rdkit.Chem.rdSubstructLibrary module ================================= WARNING: autodoc: failed to import module 'Chem.rdSubstructLibrary' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdchem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdfiltercatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdfragcatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdinchi' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdmolfiles' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdmolops' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdqueries' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdtrajectory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataManip' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataManip.Metric' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitEnsemble' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitEnsembleDb' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.HierarchyVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.LazySignature' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.TopNContainer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.VectCollection' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbConnection' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbInfo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbModule' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbReport' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbResultSet' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.StorageUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DistanceGeometry' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ForceField' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Geometry' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.AnalyzeComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.BuildComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Butina' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.ClusterUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.ClusterVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Clusters' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Murtagh' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Resemblance' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Standardize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.murtagh_test' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.AdjustComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.BayesComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.Composite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.CompositeRun' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.DataUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.FindQuantBounds' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.MLData' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Quantize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.SplitData' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Stats' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Transforms' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.BuildQuantTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.BuildSigTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.DecTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.Forest' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.ID3' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.PruneTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.QuantTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.SigTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.Tree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.TreeUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.TreeVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.randomtest' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.CompoundDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.MoleculeDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.Parser' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.EnrichPlot' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.GrowComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.BitClusterer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.BitRank' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.entropy' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.DistFunctions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNClassificationModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNRegressionModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MLUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MLUtils.VoteImg' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MatOps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage.PackageUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage.Packager' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes.ClassificationModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.ActFuncs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.NetNode' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.Network' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.Trainers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.SLT' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.SLT.Risk' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Scoring' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Scoring.Scoring' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ScreenComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.files' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Numerics' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDConfig' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDLogger' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDPaths' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDRandom' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'SimDivFilters' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'SimDivFilters.SimilarityPickers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'TestRunner' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Filter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Node' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.DbMolSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.DbPickleSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SDSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsMolFilter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsRemover' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesDupeFilter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesOutput' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.demo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Output' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Supply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Transform' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'six' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.cactvs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemdraw' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemdraw_qax' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.comhack' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.fileutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.listutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.spiral' from module 'rdkit'; the following exception was raised: No module named 'rdkit' looking for now-outdated files... none found pickling environment... done checking consistency... /build/rdkit-201809.1+dfsg/Docs/Book/source/modules.rst: WARNING: document isn't included in any toctree done processing RDKit.tex...index Overview Install GettingStartedInPython RDKit_Book Cookbook Cartridge BackwardsIncompatibleChanges api-docs source/rdkit source/rdkit.Avalon source/rdkit.Avalon.pyAvalonTools source/rdkit.Chem source/rdkit.Chem.AtomPairs source/rdkit.Chem.AtomPairs.Pairs source/rdkit.Chem.AtomPairs.Sheridan source/rdkit.Chem.AtomPairs.Torsions source/rdkit.Chem.AtomPairs.Utils source/rdkit.Chem.ChemUtils source/rdkit.Chem.ChemUtils.AlignDepict source/rdkit.Chem.ChemUtils.BulkTester source/rdkit.Chem.ChemUtils.DescriptorUtilities source/rdkit.Chem.ChemUtils.SDFToCSV source/rdkit.Chem.ChemUtils.TemplateExpand source/rdkit.Chem.Draw source/rdkit.Chem.Draw.IPythonConsole source/rdkit.Chem.Draw.MolDrawing source/rdkit.Chem.Draw.SimilarityMaps source/rdkit.Chem.Draw.rdMolDraw2D source/rdkit.Chem.Draw.aggCanvas source/rdkit.Chem.Draw.cairoCanvas source/rdkit.Chem.Draw.canvasbase source/rdkit.Chem.Draw.mplCanvas source/rdkit.Chem.Draw.qtCanvas source/rdkit.Chem.EState source/rdkit.Chem.EState.AtomTypes source/rdkit.Chem.EState.EState source/rdkit.Chem.EState.EState_VSA source/rdkit.Chem.EState.Fingerprinter source/rdkit.Chem.FeatMaps source/rdkit.Chem.FeatMaps.FeatMapParser source/rdkit.Chem.FeatMaps.FeatMapPoint source/rdkit.Chem.FeatMaps.FeatMapUtils source/rdkit.Chem.FeatMaps.FeatMaps source/rdkit.Chem.Features source/rdkit.Chem.Features.FeatDirUtilsRD source/rdkit.Chem.Features.ShowFeats source/rdkit.Chem.Fingerprints source/rdkit.Chem.Fingerprints.ClusterMols source/rdkit.Chem.Fingerprints.DbFpSupplier source/rdkit.Chem.Fingerprints.FingerprintMols source/rdkit.Chem.Fingerprints.MolSimilarity source/rdkit.Chem.Fingerprints.SimilarityScreener source/rdkit.Chem.Fraggle source/rdkit.Chem.Fraggle.FraggleSim source/rdkit.Chem.MolDb source/rdkit.Chem.MolDb.FingerprintUtils source/rdkit.Chem.MolDb.Loader source/rdkit.Chem.MolDb.Loader_orig source/rdkit.Chem.MolDb.Loader_sa source/rdkit.Chem.MolKey source/rdkit.Chem.MolKey.InchiInfo source/rdkit.Chem.MolKey.MolKey source/rdkit.Chem.Pharm2D source/rdkit.Chem.Pharm2D.Generate source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D source/rdkit.Chem.Pharm2D.LazyGenerator source/rdkit.Chem.Pharm2D.Matcher source/rdkit.Chem.Pharm2D.SigFactory source/rdkit.Chem.Pharm2D.Utils source/rdkit.Chem.Pharm3D source/rdkit.Chem.Pharm3D.EmbedLib source/rdkit.Chem.Pharm3D.ExcludedVolume source/rdkit.Chem.Pharm3D.Pharmacophore source/rdkit.Chem.Scaffolds source/rdkit.Chem.Scaffolds.MurckoScaffold source/rdkit.Chem.Scaffolds.ScaffoldTree source/rdkit.Chem.SimpleEnum source/rdkit.Chem.SimpleEnum.Enumerator source/rdkit.Chem.Subshape source/rdkit.Chem.Subshape.BuilderUtils source/rdkit.Chem.Subshape.SubshapeAligner source/rdkit.Chem.Subshape.SubshapeBuilder source/rdkit.Chem.Subshape.SubshapeObjects source/rdkit.Chem.Subshape.testCombined source/rdkit.Chem.Suppliers source/rdkit.Chem.Suppliers.DbMolSupplier source/rdkit.Chem.Suppliers.MolSupplier source/rdkit.Chem.fmcs source/rdkit.Chem.fmcs.fmcs source/rdkit.Chem.AllChem source/rdkit.Chem.BRICS source/rdkit.Chem.BuildFragmentCatalog source/rdkit.Chem.ChemicalFeatures source/rdkit.Chem.ChemicalForceFields source/rdkit.Chem.Crippen source/rdkit.Chem.DSViewer source/rdkit.Chem.Descriptors source/rdkit.Chem.Descriptors3D source/rdkit.Chem.EnumerateHeterocycles source/rdkit.Chem.EnumerateStereoisomers source/rdkit.Chem.FastSDMolSupplier source/rdkit.Chem.FeatFinderCLI source/rdkit.Chem.FilterCatalog source/rdkit.Chem.FragmentCatalog source/rdkit.Chem.FragmentMatcher source/rdkit.Chem.Fragments source/rdkit.Chem.FunctionalGroups source/rdkit.Chem.GraphDescriptors source/rdkit.Chem.Graphs source/rdkit.Chem.Lipinski source/rdkit.Chem.MACCSkeys source/rdkit.Chem.MCS source/rdkit.Chem.MolCatalog source/rdkit.Chem.MolStandardize source/rdkit.Chem.MolStandardize.rdMolStandardize source/rdkit.Chem.MolSurf source/rdkit.Chem.PandasTools source/rdkit.Chem.PeriodicTable source/rdkit.Chem.PropertyMol source/rdkit.Chem.PyMol source/rdkit.Chem.QED 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 108--109 []\T1/ptm/m/n/10 Cheminformatics nodes for KN-IME (dis-tributed from the KN-IME com-mu-nity site: [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 202. [2] [3] [4] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [5] [6] [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 709--710 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [11] Underfull \hbox (badness 10000) in paragraph at lines 807--808 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ [12] [13] Underfull \hbox (badness 10000) in paragraph at lines 988--990 []\T1/ptm/m/n/10 Run cmake. Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" [14] Underfull \hbox (badness 10000) in paragraph at lines 998--999 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 1004--1005 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [15] [16] Chapter 3. [17] Underfull \hbox (badness 10000) in paragraph at lines 1094--1095 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [18] [19] LaTeX Warning: Hyper reference `GettingStartedInPython:chem-vs-allchem' on page 20 undefined on input line 1273. [20] [21] [22] LaTeX Warning: Hyper reference `GettingStartedInPython:the-sssr-problem' on pag e 23 undefined on input line 1488. [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1621--1623 []\T1/ptm/m/n/10 Another op-tion for Com-pute2DCoords al-lows you to gen-er-ate 2D de-pic-tions for molecules that Underfull \hbox (badness 7649) in paragraph at lines 1621--1623 \T1/ptm/m/n/10 closely mimic 3D con-for-ma-tions. This is avail-able us-ing the func-tion \T1/pcr/m/n/10 rdkit.Chem.AllChem. [25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 1641--1646 []\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor. [26 <./picture_2.png> <./picture_4.png>] [27] [28] [29 <./cdk2_mol1.png> <./cdk 2_mol2.png>] [30 <./cdk2_molgrid.png>] [31 <./cdk2_molgrid_aligned.png (PNG cop y)>] [32] LaTeX Warning: Hyper reference `GettingStartedInPython:chemical-reactions' on p age 33 undefined on input line 2035. LaTeX Warning: Hyper reference `GettingStartedInPython:chemical-reactions' on p age 33 undefined on input line 2080. [33] [34] [35] [36] [37] [38] LaTeX Warning: Hyper reference `GettingStartedInPython:feature-definitions-used -in-the-morgan-fingerprints' on page 39 undefined on input line 2502. [39] [40] [41] [42 <./mfp2_bit872.png> <./rdk_bit1553.png> <./rdk_bit1553_2.png >] [43] Overfull \vbox (9.6296pt too high) detected at line 2819 [44 <./similarity_map_fp1.png>] [45 <./similarity_map_fp2.png>] LaTeX Warning: Hyper reference `GettingStartedInPython:list-of-available-descri ptors' on page 46 undefined on input line 2851. [46 <./similarity_map_fp3.png>] [47] [48 <./similarity_map_charges.png>] LaTeX Warning: Hyper reference `RDKit_Book::doc' on page 49 undefined on input line 2914. [49 <./similarity_map_crippen.png>] [50] [51] [52] [53] [54] LaTeX Warning: Hyper reference `RDKit_Book::doc' on page 55 undefined on input line 3319. [55] [56] [57] [58] Underfull \hbox (badness 6792) in paragraph at lines 3562--3565 []\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory. [59] [60] [61 <./picture_6.png>] [62] Underfull \hbox (badness 10000) in paragraph at lines 3882--3886 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Underfull \hbox (badness 10000) in paragraph at lines 3892--3896 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Overfull \hbox (26.64615pt too wide) in paragraph at lines 3960--3961 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}Rings| Overfull \hbox (91.89552pt too wide) in paragraph at lines 3965--3966 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}{Hetero,Carbo}cycles| Underfull \hbox (badness 10000) in paragraph at lines 3994--3997 []|\T1/ptm/m/n/10 Number of bridge-head atoms Overfull \hbox (150.19545pt too wide) in paragraph at lines 4008--4010 [] Underfull \hbox (badness 10000) in paragraph at lines 4008--4010 \T1/ptm/m/n/10 to the orig-i-nal Underfull \hbox (badness 10000) in paragraph at lines 4027--4030 \T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com / Underfull \hbox (badness 10000) in paragraph at lines 4036--4040 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . 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[69 <./picture_9.png (PNG copy)>] [70 <./picture_8.png> <./picture_7.png (PNG c opy)>] [71 <./picture_10.png> <./picture_12.png>] [72 <./picture_11.png>] [73] Overfull \hbox (53.45044pt too wide) in paragraph at lines 4709--4709 [] Underfull \hbox (badness 10000) in paragraph at lines 4709--4709 [74] [75] [76] [77] [78] [79] LaTeX Warning: Hyper reference `RDKit_Book:ph4-figure' on page 80 undefined on input line 5165. 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[113] [114] [115] [116] [117] [118] [119] [120] Chapter 7. [121] [122] Chapter 8. [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] Chapter 9. [141] [142] Chapter 10. No file RDKit.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. [143] (./RDKit.aux) Package rerunfilecheck Warning: File `RDKit.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on RDKit.pdf (147 pages, 1593101 bytes). Transcript written on RDKit.log. Latexmk: Index file 'RDKit.idx' was written Latexmk: Missing input file: 'RDKit.ind' from line 'No file RDKit.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'RDKit.pdf' Rule 'makeindex RDKit.idx': File changes, etc: Changed files, or newly in use since previous run(s): 'RDKit.idx' Non-existent destination files: 'RDKit.ind' ------------ Run number 1 of rule 'makeindex RDKit.idx' ------------ ------------ Running 'makeindex -s python.ist -o "RDKit.ind" "RDKit.idx"' ------------ === TeX engine is 'pdfTeX' Latexmk: applying rule 'makeindex RDKit.idx'... This is makeindex, version 2.15 [TeX Live 2019/dev] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file RDKit.idx...done (0 entries accepted, 0 rejected). Nothing written in RDKit.ind. Transcript written in RDKit.ilg. 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LaTeX Warning: Label `BackwardsIncompatibleChanges:license' multiply defined. ) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./RDKit.out) (./RDKit.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./RDKit.toc [1] [2] [3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [4]) [5] [6] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 108--109 []\T1/ptm/m/n/10 Cheminformatics nodes for KN-IME (dis-tributed from the KN-IME com-mu-nity site: [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 202. [2] [3] [4] Chapter 2. [5] [6] [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 709--710 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [11] Underfull \hbox (badness 10000) in paragraph at lines 807--808 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ [12] [13] Underfull \hbox (badness 10000) in paragraph at lines 988--990 []\T1/ptm/m/n/10 Run cmake. Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" [14] Underfull \hbox (badness 10000) in paragraph at lines 998--999 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 1004--1005 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [15] [16] Chapter 3. [17] Underfull \hbox (badness 10000) in paragraph at lines 1094--1095 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [18] [19] [20] [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1621--1623 []\T1/ptm/m/n/10 Another op-tion for Com-pute2DCoords al-lows you to gen-er-ate 2D de-pic-tions for molecules that Underfull \hbox (badness 7649) in paragraph at lines 1621--1623 \T1/ptm/m/n/10 closely mimic 3D con-for-ma-tions. This is avail-able us-ing the func-tion \T1/pcr/m/n/10 rdkit.Chem.AllChem. [25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 1641--1646 []\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor. [26 <./picture_2.png> <./picture_4.png>] [27] [28] [29 <./cdk2_mol1.png> <./cdk 2_mol2.png>] [30 <./cdk2_molgrid.png>] [31 <./cdk2_molgrid_aligned.png (PNG cop y)>] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42 <./mfp2_bit872.png> <./rdk_bit1553.png> <./rdk_bit1553_2.png>] [43] Overfull \vbox (9.6296pt too high) detected at line 2819 [44 <./similarity_map_fp1.png>] [45 <./similarity_map_fp2.png>] [46 <./similari ty_map_fp3.png>] [47] [48 <./similarity_map_charges.png>] [49 <./similarity_map _crippen.png>] [50] [51] [52] [53] [54] [55] [56] [57] [58] Underfull \hbox (badness 6792) in paragraph at lines 3562--3565 []\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory. [59] [60] [61 <./picture_6.png>] [62] Underfull \hbox (badness 10000) in paragraph at lines 3882--3886 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Underfull \hbox (badness 10000) in paragraph at lines 3892--3896 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Overfull \hbox (26.64615pt too wide) in paragraph at lines 3960--3961 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}Rings| Overfull \hbox (91.89552pt too wide) in paragraph at lines 3965--3966 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}{Hetero,Carbo}cycles| Underfull \hbox (badness 10000) in paragraph at lines 3994--3997 []|\T1/ptm/m/n/10 Number of bridge-head atoms Overfull \hbox (150.19545pt too wide) in paragraph at lines 4008--4010 [] Underfull \hbox (badness 10000) in paragraph at lines 4008--4010 \T1/ptm/m/n/10 to the orig-i-nal Underfull \hbox (badness 10000) in paragraph at lines 4027--4030 \T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com / Underfull \hbox (badness 10000) in paragraph at lines 4036--4040 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . 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Underfull \hbox (badness 10000) in paragraph at lines 4082--4085 []|\T1/ptm/m/n/10 implemented us-ing a set of Underfull \hbox (badness 10000) in paragraph at lines 4082--4085 \T1/ptm/m/n/10 SMARTS def-i-ni-tions in $(RD- Overfull \hbox (9.18636pt too wide) in paragraph at lines 4082--4085 \T1/ptm/m/n/10 BASE)/Data/FragmentDescriptors.csv| Underfull \hbox (badness 7273) in paragraph at lines 4091--4094 \T1/ptm/m/n/10 and Con-soni ^^PDe-scrip-tors from [63] Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 De-scrip- Overfull \hbox (19.60335pt too wide) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 tor/Descriptor Overfull \hbox (3.88354pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Lan- Overfull \hbox (8.88354pt too wide) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 guage| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 best fit Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 PMI1, Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 PMI2, Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 NPR1, Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Ra- Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 dius of Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 In-er-tial Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 shape Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Ec-cen- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 As- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Sphe- Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 roc-ity Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Au-to- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 GET- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| [64] Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Fin-ger-print Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Lan- Overfull \hbox (2.77637pt too wide) in paragraph at lines 4321--4321 \T1/ptm/m/n/10 guage| Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Topo-log-i-cal Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Mor- Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 2D Phar-ma- [65] Overfull \hbox (0.97221pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Fea- Overfull \hbox (8.75237pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Donor| Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Ac- Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/pcr/m/n/10 [$([O,S;H1;v2;!$(*-*=[O,N,P,S])]),$([O,S;H0;v2]),$([O,S;-]),$( [N;v3;! 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[69 <./picture_9.png (PNG copy)>] [70 <./picture_8.png> <./picture_7.png (PNG c opy)>] [71 <./picture_10.png> <./picture_12.png>] [72 <./picture_11.png>] [73] Overfull \hbox (53.45044pt too wide) in paragraph at lines 4709--4709 [] Underfull \hbox (badness 10000) in paragraph at lines 4709--4709 [74] [75] [76] [77] [78] [79] [80] [81 <./picture_10.jpg>] Overfull \vbox (2.72571pt too high) detected at line 5369 [82] [83] Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 _Chi-ral-i-ty-Pos-si- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 _Re-ac-tion-De- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 mo-lAtomMap- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 molFileIn-ver- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 mol-Rxn-Com-po- [84] [85] [86] Chapter 5. [87] [88 <./indole1.png>] Overfull \vbox (2.48352pt too high) detected at line 5882 [89] [90] [91] Overfull \vbox (1.52577pt too high) detected at line 6067 [92] [93] [94] Overfull \vbox (2.13905pt too high) detected at line 6246 [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 6279--6280 []\T1/ptm/m/n/10 IPython note-book: [][]$http : / / nbviewer . ipython . org / gist / greglandrum / 8351725$[][] [][]$https : / / gist . github . com / gregla ndrum / [97 <./similarity_map_rf.png>] [98] [99] Underfull \vbox (badness 10000) detected at line 6505 Overfull \vbox (2.68169pt too high) detected at line 6505 [100] [101] [102] Chapter 6. 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@H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C[]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ] (Cc2ccc(O)cc2)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)NC([]=[]| Overfull \vbox (13.68167pt too high) detected at line 6845 [108] Overfull \hbox (21.64442pt too wide) in paragraph at lines 6858--6858 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| Overfull \hbox (21.64442pt too wide) in paragraph at lines 6894--6894 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| [109] Overfull \hbox (21.64442pt too wide) in paragraph at lines 6917--6917 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] Chapter 7. [121] [122] Chapter 8. [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] Chapter 9. [141] [142] Chapter 10. (./RDKit.ind) [143] (./RDKit.aux) LaTeX Warning: There were undefined references. LaTeX Warning: There were multiply-defined labels. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on RDKit.pdf (151 pages, 1623130 bytes). Transcript written on RDKit.log. Latexmk: Index file 'RDKit.idx' was written Latexmk: Log file says output to 'RDKit.pdf' Latexmk: List of undefined refs and citations: Label `BackwardsIncompatibleChanges:backwards-incompatible-changes' multiply defined Label `BackwardsIncompatibleChanges:changes-to-ringmatchesringonly-option-in-the-mcs-code' multiply defined Label `BackwardsIncompatibleChanges:getatomsmiles-generates-isomeric-smiles-by-default' multiply defined Label `BackwardsIncompatibleChanges:license' multiply defined Label `BackwardsIncompatibleChanges:moltomolblock-generates-a-2d-conformation-when-the-includestereo-flag-is-set' multiply defined Label `BackwardsIncompatibleChanges:moltosmiles-generates-isomeric-smiles-by-default' multiply defined Label `BackwardsIncompatibleChanges:release-2018-03' multiply defined Label `BackwardsIncompatibleChanges:release-2018-09' multiply defined Label `BackwardsIncompatibleChanges:the-conformation-generation-code-now-uses-etkdg-by-default' multiply defined Label 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 108--109 []\T1/ptm/m/n/10 Cheminformatics nodes for KN-IME (dis-tributed from the KN-IME com-mu-nity site: [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 202. [2] [3] [4] Chapter 2. [5] [6] [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 709--710 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [11] Underfull \hbox (badness 10000) in paragraph at lines 807--808 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ [12] [13] Underfull \hbox (badness 10000) in paragraph at lines 988--990 []\T1/ptm/m/n/10 Run cmake. Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" [14] Underfull \hbox (badness 10000) in paragraph at lines 998--999 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 1004--1005 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [15] [16] Chapter 3. [17] Underfull \hbox (badness 10000) in paragraph at lines 1094--1095 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [18] [19] [20] [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1621--1623 []\T1/ptm/m/n/10 Another op-tion for Com-pute2DCoords al-lows you to gen-er-ate 2D de-pic-tions for molecules that Underfull \hbox (badness 7649) in paragraph at lines 1621--1623 \T1/ptm/m/n/10 closely mimic 3D con-for-ma-tions. This is avail-able us-ing the func-tion \T1/pcr/m/n/10 rdkit.Chem.AllChem. [25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 1641--1646 []\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor. [26 <./picture_2.png> <./picture_4.png>] [27] [28] [29 <./cdk2_mol1.png> <./cdk 2_mol2.png>] [30 <./cdk2_molgrid.png>] [31 <./cdk2_molgrid_aligned.png (PNG cop y)>] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42 <./mfp2_bit872.png> <./rdk_bit1553.png> <./rdk_bit1553_2.png>] [43] Overfull \vbox (9.6296pt too high) detected at line 2819 [44 <./similarity_map_fp1.png>] [45 <./similarity_map_fp2.png>] [46 <./similari ty_map_fp3.png>] [47] [48 <./similarity_map_charges.png>] [49 <./similarity_map _crippen.png>] [50] [51] [52] [53] [54] [55] [56] [57] [58] Underfull \hbox (badness 6792) in paragraph at lines 3562--3565 []\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory. [59] [60] [61 <./picture_6.png>] [62] Underfull \hbox (badness 10000) in paragraph at lines 3882--3886 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Underfull \hbox (badness 10000) in paragraph at lines 3892--3896 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Overfull \hbox (26.64615pt too wide) in paragraph at lines 3960--3961 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}Rings| Overfull \hbox (91.89552pt too wide) in paragraph at lines 3965--3966 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}{Hetero,Carbo}cycles| Underfull \hbox (badness 10000) in paragraph at lines 3994--3997 []|\T1/ptm/m/n/10 Number of bridge-head atoms Overfull \hbox (150.19545pt too wide) in paragraph at lines 4008--4010 [] Underfull \hbox (badness 10000) in paragraph at lines 4008--4010 \T1/ptm/m/n/10 to the orig-i-nal Underfull \hbox (badness 10000) in paragraph at lines 4027--4030 \T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com / Underfull \hbox (badness 10000) in paragraph at lines 4036--4040 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4046--4050 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . 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[69 <./picture_9.png (PNG copy)>] [70 <./picture_8.png> <./picture_7.png (PNG c opy)>] [71 <./picture_10.png> <./picture_12.png>] [72 <./picture_11.png>] [73] Overfull \hbox (53.45044pt too wide) in paragraph at lines 4709--4709 [] Underfull \hbox (badness 10000) in paragraph at lines 4709--4709 [74] [75] [76] [77] [78] [79] [80] [81 <./picture_10.jpg>] Overfull \vbox (2.72571pt too high) detected at line 5369 [82] [83] Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 _Chi-ral-i-ty-Pos-si- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 _Re-ac-tion-De- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 mo-lAtomMap- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 molFileIn-ver- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 mol-Rxn-Com-po- [84] [85] [86] Chapter 5. [87] [88 <./indole1.png>] Overfull \vbox (2.48352pt too high) detected at line 5882 [89] [90] [91] Overfull \vbox (1.52577pt too high) detected at line 6067 [92] [93] [94] Overfull \vbox (2.13905pt too high) detected at line 6246 [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 6279--6280 []\T1/ptm/m/n/10 IPython note-book: [][]$http : / / nbviewer . ipython . org / gist / greglandrum / 8351725$[][] [][]$https : / / gist . github . com / gregla ndrum / [97 <./similarity_map_rf.png>] [98] [99] Underfull \vbox (badness 10000) detected at line 6505 Overfull \vbox (2.68169pt too high) detected at line 6505 [100] [101] [102] Chapter 6. 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(426.64397pt too wide) in paragraph at lines 6804--6804 []|\T1/pcr/m/n/9 ([]=[]O)CNC([]=[]O)CN)CSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m /n/9 ](C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(O)cc2)C([]=[ ]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)C([]=[]O)N[C[]\T1/pcr/b/n/9 @ H[]\T1/pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)NCC(N)[]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2 )NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccccc2)NC([]=[]O)CNC| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6808--6808 []\T1/pcr/m/n/9 CC1(C)SSC(C)(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]= []O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C[]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ] (Cc2ccc(O)cc2)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[ 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](CCCCNC([]=[]O)c1ccccc1N)C([]=[]O)NCC([]=[]O)O)[C[]@[][]\T1/pcr/b/n/9 @H[ ]\T1/pcr/m/n/9 ](C)OC(C)(C)C| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6830--6830 []\T1/pcr/m/n/9 CC(C)C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O) [C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]([C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]c3ccccc23)NC([]=[ ]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCN)NC([]=[]O )[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCC(N)[]=[]O)NC([]=[]O| Overfull \hbox (442.84395pt too wide) in paragraph at lines 6831--6831 []|\T1/pcr/m/n/9 )CNC([]=[]O)CN)CSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]( C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(O)cc2)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)NCC(N)[]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr /m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)NC([]= []O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccccc2)NC([]=[]O)CNC([]=[]O)[C| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6833--6833 []\T1/pcr/m/n/9 NC(N)[]=[]NCCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](NC([]=[]O)[ C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](N)CC([]=[]O)O)C([]=[]O)N[C[]\T1/pcr/b /n/9 @H[]\T1/pcr/m/n/9 ][]1[]CCSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C( []=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C []\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T 1/pcr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/ 9 ](Cc2ccc(O)cc| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6835--6835 []\T1/pcr/m/n/9 CC1(C)SSC(C)(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]= []O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C[]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ] (Cc2ccc(O)cc2)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)NC([]=[]| Overfull \vbox (13.68167pt too high) detected at line 6845 [108] Overfull \hbox (21.64442pt too wide) in paragraph at lines 6858--6858 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| Overfull \hbox (21.64442pt too wide) in paragraph at lines 6894--6894 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| [109] Overfull \hbox (21.64442pt too wide) in paragraph at lines 6917--6917 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] Chapter 7. [121] [122] Chapter 8. [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] Chapter 9. [141] [142] Chapter 10. (./RDKit.ind) [143] (./RDKit.aux) LaTeX Warning: There were undefined references. LaTeX Warning: There were multiply-defined labels. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on RDKit.pdf (151 pages, 1623130 bytes). Transcript written on RDKit.log. Latexmk: Index file 'RDKit.idx' was written Latexmk: Log file says output to 'RDKit.pdf' Latexmk: List of undefined refs and citations: Label `BackwardsIncompatibleChanges:backwards-incompatible-changes' multiply defined Label `BackwardsIncompatibleChanges:changes-to-ringmatchesringonly-option-in-the-mcs-code' multiply defined Label `BackwardsIncompatibleChanges:getatomsmiles-generates-isomeric-smiles-by-default' multiply defined Label `BackwardsIncompatibleChanges:license' multiply defined Label `BackwardsIncompatibleChanges:moltomolblock-generates-a-2d-conformation-when-the-includestereo-flag-is-set' multiply defined Label `BackwardsIncompatibleChanges:moltosmiles-generates-isomeric-smiles-by-default' multiply defined Label `BackwardsIncompatibleChanges:release-2018-03' multiply defined Label `BackwardsIncompatibleChanges:release-2018-09' multiply defined Label `BackwardsIncompatibleChanges:the-conformation-generation-code-now-uses-etkdg-by-default' multiply defined Label `BackwardsIncompatibleChanges:the-conformation-generation-code-now-uses-etkdg-by-default-when-called-from-python' multiply defined Label `Cartridge:adjusting-the-similarity-cutoff' multiply defined Label `Cartridge:configuration' multiply defined Label `Cartridge:connectivity-descriptors' multiply defined Label `Cartridge:creating-a-database-from-a-file' multiply defined Label `Cartridge:creating-databases' multiply defined Label `Cartridge:descriptors' multiply defined Label `Cartridge:fingerprint-i-o' multiply defined Label `Cartridge:fingerprint-related' multiply defined Label `Cartridge:functions' multiply defined Label `Cartridge:generating-fingerprints' multiply defined Label `Cartridge:introduction' multiply defined Label `Cartridge:license' multiply defined Label `Cartridge:loading-chembl' multiply defined Label `Cartridge:mcs' multiply defined Label `Cartridge:molecule-comparison' multiply defined Label `Cartridge:molecule-i-o-and-validation' multiply defined Label `Cartridge:molecule-related' multiply defined Label `Cartridge:new-types' multiply defined Label `Cartridge:operators' multiply defined Label `Cartridge:other' multiply defined Label `Cartridge:parameters' multiply defined Label `Cartridge:reference-guide' multiply defined Label `Cartridge:similarity-search' multiply defined Label `Cartridge:similarity-searches' multiply defined Label `Cartridge:smarts-based-queries' multiply defined Label `Cartridge:substructure-and-exact-structure-search' multiply defined Label `Cartridge:substructure-operations' multiply defined Label `Cartridge:substructure-searches' multiply defined Label `Cartridge:the-rdkit-database-cartridge' multiply defined Label `Cartridge:tuning-queries' multiply defined Label `Cartridge:tutorial' multiply defined Label `Cartridge:using-stereochemistry' multiply defined Label `Cartridge:using-the-cartridge-from-python' multiply defined Label `Cartridge:using-the-mcs-code' multiply defined Label `Cartridge:what-is-this' multiply defined Label `Cartridge:working-with-fingerprints' multiply defined Label `Cookbook:cleaning-up-heterocycles' multiply defined Label `Cookbook:clustering-molecules' multiply defined Label `Cookbook:d-functionality-in-the-rdkit' multiply defined Label `Cookbook:details' multiply defined Label `Cookbook:introduction' multiply defined Label `Cookbook:license' multiply defined Label `Cookbook:manipulating-molecules' multiply defined Label `Cookbook:miscellaneous-topics' multiply defined Label `Cookbook:neutralizing-charged-molecules' multiply defined Label `Cookbook:parallel-conformation-generation' multiply defined Label `Cookbook:rdkit-cookbook' multiply defined Label `Cookbook:rmsd-calculation-between-n-molecules' multiply defined Label `Cookbook:using-a-different-aromaticity-model' multiply defined Label `Cookbook:using-custom-mcs-atom-types' multiply defined Label `Cookbook:using-scikit-learn-with-rdkit' multiply defined Label `Cookbook:what-is-this' multiply defined Label `Install:advanced' multiply defined Label `Install:building-from-source' multiply defined Label `Install:building-from-the-command-line-recommended' multiply defined Label `Install:building-the-java-wrappers' multiply defined Label `Install:building-the-rdkit' multiply defined Label `Install:conda-forge-package' multiply defined Label `Install:cross-platform-under-anaconda-python-fastest-install' multiply defined Label `Install:disabling-the-python-wrappers' multiply defined Label `Install:extra-software-to-install' multiply defined Label `Install:fedora-centos-and-rhel' multiply defined Label `Install:frequently-encountered-problems' multiply defined Label `Install:how-to-build-from-source-with-conda' multiply defined Label `Install:how-to-get-conda' multiply defined Label `Install:how-to-install-rdkit-with-conda' multiply defined Label `Install:installation' multiply defined Label `Install:installation-from-repositories' multiply defined Label `Install:installation-from-source' multiply defined Label `Install:installation-of-rdkit-binaries' multiply defined Label `Install:installing-and-using-postgresql-and-the-rdkit-postgresql-cartridge-from-a-conda-environment' multiply defined Label `Install:installing-boost' multiply defined Label `Install:installing-prerequisites-from-source' multiply defined Label `Install:introduction-to-anaconda' multiply defined Label `Install:license' multiply defined Label `Install:linux-and-os-x' multiply defined Label `Install:linux-x86-64-python-3-environment' multiply defined Label `Install:macos-10-12-sierra-python-3-environment' multiply defined Label `Install:optional-packages' multiply defined Label `Install:os-x' multiply defined Label `Install:prerequisites' multiply defined Label `Install:recommended-extras' multiply defined Label `Install:setup-and-preparation' multiply defined Label `Install:specifying-an-alternate-boost-installation' multiply defined Label `Install:specifying-an-alternate-python-installation' multiply defined Label `Install:testing-the-build-optional-but-recommended' multiply defined Label `Install:ubuntu-12-04-and-later' multiply defined Label `Install:windows' multiply defined Label `Overview:an-overview-of-the-rdkit' multiply defined Label `Overview:footnotes' multiply defined Label `Overview:history' multiply defined Label `Overview:integration-with-other-open-source-projects' multiply defined Label `Overview:license' multiply defined Label `Overview:open-source-toolkit-for-cheminformatics' multiply defined Label `Overview:operational' multiply defined Label `Overview:the-contrib-directory' multiply defined Label `Overview:usage-by-other-open-source-projects' multiply defined Label `Overview:what-is-it' multiply defined Latexmk: Summary of warnings from last run of (pdf)latex: Latex found 114 multiply defined reference(s) === TeX engine is 'pdfTeX' Latexmk: All targets (RDKit.pdf) are up-to-date make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/Docs/Book/_build/latex' pdflatex finished; the PDF files are in _build/latex. make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/Docs/Book' make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/rdkit-201809.1+dfsg' cp -r rdkit obj-*/ find /build/rdkit-201809.1+dfsg -name rdchem.so /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/rdkit/Chem/rdchem.so #export RDBASE=/build/rdkit-201809.1+dfsg PYTHONPATH=/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/ LD_LIBRARY_PATH="/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu//lib:" PYTHONPATH=/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/:/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu//rdkit/Chem/ LD_LIBRARY_PATH="/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu//lib:" dh_auto_test cd obj-aarch64-linux-gnu && make -j8 test ARGS\+=-j8 make[2]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j8 Test project /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu Start 1: testDict Start 2: testRDValue Start 3: testDataStructs Start 4: testFPB Start 5: testMultiFPB Start 6: pyBV Start 7: pyDiscreteValueVect Start 8: pySparseIntVect 1/142 Test #2: testRDValue ........................ Passed 0.02 sec Start 9: pyFPB 2/142 Test #5: testMultiFPB ....................... Passed 0.01 sec Start 10: testTransforms 3/142 Test #3: testDataStructs .................... Passed 0.02 sec Start 11: testGrid 4/142 Test #4: testFPB ............................ Passed 0.02 sec Start 12: testPyGeometry 5/142 Test #10: testTransforms ..................... Passed 0.01 sec Start 13: testMatrices 6/142 Test #13: testMatrices ....................... Passed 0.02 sec Start 14: testAlignment 7/142 Test #11: testGrid ........................... Passed 0.03 sec Start 15: pyAlignment 8/142 Test #14: testAlignment ...................... Passed 0.02 sec Start 16: testOptimizer 9/142 Test #16: testOptimizer ...................... Passed 0.02 sec Start 17: testUFFForceField 10/142 Test #17: testUFFForceField .................. Passed 0.16 sec Start 18: testMMFFForceField 11/142 Test #15: pyAlignment ........................ Passed 0.25 sec Start 19: pyForceFieldConstraints 12/142 Test #9: pyFPB .............................. Passed 0.31 sec Start 20: testDistGeom 13/142 Test #12: testPyGeometry ..................... Passed 0.32 sec Start 21: pyDistGeom 14/142 Test #20: testDistGeom ....................... Passed 0.03 sec Start 22: graphmolTest1 15/142 Test #7: pyDiscreteValueVect ................ Passed 0.36 sec Start 23: graphmolcpTest 16/142 Test #8: pySparseIntVect .................... Passed 0.38 sec Start 24: graphmolqueryTest 17/142 Test #23: graphmolcpTest ..................... Passed 0.05 sec Start 25: graphmolMolOpsTest 18/142 Test #24: graphmolqueryTest .................. Passed 0.05 sec Start 26: graphmoltestCanon 19/142 Test #26: graphmoltestCanon .................. Passed 0.04 sec Start 27: graphmoltestChirality 20/142 Test #21: pyDistGeom ......................... Passed 0.24 sec Start 28: graphmoltestPickler 21/142 Test #27: graphmoltestChirality .............. Passed 0.19 sec Start 29: graphmoltestPicklerGlobalSetting 22/142 Test #29: graphmoltestPicklerGlobalSetting ... Passed 0.08 sec Start 30: graphmolIterTest 23/142 Test #30: graphmolIterTest ................... Passed 0.08 sec Start 31: hanoiTest 24/142 Test #28: graphmoltestPickler ................Child aborted***Exception: 0.44 sec [03:48:08] ------------------------------------- [03:48:08] Testing String Pickle Roundtrips. [03:48:08] done [03:48:08] ------------------------------------- [03:48:08] Testing reading existing pickle file (v2). [03:48:08] done [03:48:08] ------------------------------------- [03:48:08] Testing combining molecules using pickles. Atoms: 0 6 C chg: 0 deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0 1 6 C chg: 0 deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0 2 6 C chg: 0 deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0 3 6 C chg: 0 deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0 4 6 C chg: 0 deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0 5 8 O chg: 0 deg: 2 exp: 2 imp: 0 hyb: 4 arom?: 0 chi: 0 6 6 C chg: 0 deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0 Bonds: 0 0->1 order: 1 conj?: 0 aromatic?: 0 1 1->2 order: 1 conj?: 0 aromatic?: 0 2 2->0 order: 1 conj?: 0 aromatic?: 0 3 3->4 order: 1 conj?: 0 aromatic?: 0 4 4->5 order: 1 conj?: 0 aromatic?: 0 5 5->6 order: 1 conj?: 0 aromatic?: 0 6 6->3 order: 1 conj?: 0 aromatic?: 0 [03:48:08] done [03:48:08] ------------------------------------- [03:48:08] Testing Issue164: Roundtrip Pickle Failure. [03:48:08] done [03:48:08] ------------------------------------- [03:48:08] Testing Issue219: Pickle Failure with Conformations. [03:48:08] done [03:48:08] ------------------------------------- [03:48:08] Testing Issue220: Pickle problems with bond stereochemistry. [03:48:08] done [03:48:08] ------------------------------------- [03:48:08] Testing query serialization. [03:48:08] C=[$(C=O)] [03:48:08] S(=O)(=O)-[C&H2]-,:[F,Br,I,Cl] S(=O)(=O)-[C&H2]-,:[F,Br,I,Cl] [03:48:08] done [03:48:08] ------------------------------------- [03:48:08] Testing radical handling in pickles. [03:48:08] done [03:48:08] ----------------------- [03:48:08] Testing pickling of properties [03:48:08] done [03:48:08] ------------------------------------- [03:48:08] Testing sf.net issue 2788233. [03:48:08] done [03:48:08] ------------------------------------- [03:48:08] Testing sf.net issue 3202580. mass! 13.0034 [03:48:08] done [03:48:08] ------------------------------------- [03:48:08] Testing sf.net issue 3316407. [03:48:08] done [03:48:08] ------------------------------------- [03:48:08] Testing sf.net issue 3496759. smi match: *C *C smi match: **=* **=* smi match: [N-]=[N+]=NC=O [N-]=[N+]=NC=O smi match: *OS(=O)OC *OS(=O)OC smi match: *S(=O)(=O)OC *S(=O)(=O)OC smi match: O=COC=O O=COC=O smi match: OO OO smi match: O=COc1c(F)c(F)c(F)c(F)c1F O=COc1c(F)c(F)c(F)c(F)c1F smi match: O=COc1ccc(N(=O)=O)cc1 O=COc1ccc(N(=O)=O)cc1 smi match: nnnOC=O nnnOC=O smi match: *=C=N *=C=N smi match: O=S(=O)(O)C(F)(F)F O=S(=O)(O)C(F)(F)F smi match: S=[PH](S)S S=[PH](S)S smi match: NP(N)(N)=O NP(N)(N)=O smi match: cN=[N+]=[N-] cN=[N+]=[N-] smi match: *CC=O *CC=O smi match: NNC=O NNC=O smi match: * * smi match: C=P C=P smi match: CC(=N)Cl CC(=N)Cl smi match: N=O N=O smi match: ** ** smi match: N=C=N N=C=N smi match: [C-]#[NH+] [C-]#[NH+] smi match: O=CON(C=O)C=O O=CON(C=O)C=O smi match: N#CCO N#CCO smi match: N#CC=O N#CC=O smi match: N#C[SH](=O)=O N#C[SH](=O)=O smi match: CCOP(=O)(C#N)OCC CCOP(=O)(C#N)OCC smi match: N#CN=N N#CN=N smi match: N=NCC=O N=NCC=O smi match: CCCCCCC CCCCCCC smi match: OCCOCCO OCCOCCO smi match: SS SS smi match: [SH] [SH] smi match: *1CC1 *1CC1 smi match: Occc(O)cO Occc(O)cO smi match: Occ(O)cO Occ(O)cO smi match: N=NC(N)=S N=NC(N)=S smi match: N#CS N#CS smi match: cC[NH3+] cC[NH3+] smi match: C*C=S C*C=S smi match: N#CCN N#CCN smi match: O=C1CCO1 O=C1CCO1 smi match: O=[PH](O)O[PH](=O)O O=[PH](O)O[PH](=O)O smi match: O=C1CCN1 O=C1CCN1 smi match: O=C1C~CC(=O)C~C1 O=C1C~CC(=O)C~C1 smi match: C=CC=CC=CC=C C=CC=CC=CC=C smi match: C1CCC(OC2CCC3CCCCC3C2)OC1 C1CCC(OC2CCC3CCCCC3C2)OC1 smi match: O=C1NCC2CCCCC12 O=C1NCC2CCCCC12 smi match: O=C1CCCC(=O)N1 O=C1CCCC(=O)N1 smi match: C1CCC(C2CCCO2)OC1 C1CCC(C2CCCO2)OC1 smi match: Oc1cc(O)c2c(c1)OC(c1ccc(O)c(O)c1)C(O)C2 Oc1cc(O)c2c(c1)OC(c1ccc(O)c(O)c1)C(O)C2 smi match: C1CC2CCC(O1)O2 C1CC2CCC(O1)O2 smi match: cN(=O)~O cN(=O)~O smi match: *CN1C(=O)CCC1=O *CN1C(=O)CCC1=O smi match: N~NC=O N~NC=O smi match: *=N~C *=N~C smi match: CO*(=O)=O CO*(=O)=O smi match: * * smi match: * * smi match: *C=C *C=C smi match: N#CS N#CS smi match: *C=S *C=S smi match: *N *N smi match: *C(=C)C=O *C(=C)C=O smi match: *C#C *C#C smi match: N#CCO N#CCO smi match: O=N(=O)CCO O=N(=O)CCO smi match: N=CS N=CS smi match: O=CNC(O)C=O O=CNC(O)C=O smi match: C=C(C=O)C=O C=C(C=O)C=O smi match: N=CC=O N=CC=O smi match: *C(C=O)C=O *C(C=O)C=O smi match: *C(C=O)=C(*)C=O *C(C=O)=C(*)C=O smi match: O=CC=CC=O O=CC=CC=O smi match: O=CN(O)C=O O=CN(O)C=O smi match: O=CN(S)C=O O=CN(S)C=O smi match: O=CNC=O O=CNC=O smi match: O=CNN=O O=CNN=O smi match: O=CNNC=O O=CNNC=O smi match: O=CNOC=O O=CNOC=O smi match: O=CS O=CS smi match: O=CSC=S O=CSC=S smi match: S=CS S=CS smi match: C=O C=O smi match: *C=N *C=N smi match: CCCCCCC CCCCCCC smi match: CN=O CN=O smi match: CS(=O)(=O)O CS(=O)(=O)O smi match: O=C1CCO1 O=C1CCO1 smi match: C=C(S)[SH]=O C=C(S)[SH]=O smi match: C=CCO C=CCO smi match: C=CC=N C=CC=N smi match: C=CC=O C=CC=O smi match: C=CC(=O)C=C C=CC(=O)C=C smi match: C=CC=S C=CC=S smi match: C=CC(=S)S C=CC(=S)S smi match: *C=C(*)C=C *C=C(*)C=C smi match: C=CC=N C=CC=N smi match: *N(*)C=C *N(*)C=C smi match: C=CN(=O)=O C=CN(=O)=O smi match: C=CN(=O)O C=CN(=O)O smi match: C=CO C=CO smi match: C=COC=O C=COC=O smi match: C=CS C=CS smi match: C=C[SH](=O)=O C=C[SH](=O)=O smi match: C=NCO C=NCO smi match: C=NC=O C=NC=O smi match: C=NN C=NN smi match: C=NN=C C=NN=C smi match: C=NO C=NO smi match: C=NOC=O C=NOC=O smi match: C=N=O C=N=O smi match: N#CS N#CS smi match: *CN=O *CN=O smi match: NCN NCN smi match: O=NCC=NO O=NCC=NO smi match: NC(S)=N[SH](=O)=O NC(S)=N[SH](=O)=O smi match: N=C(N)S N=C(N)S smi match: NC(=O)Oc1ccccc1 NC(=O)Oc1ccccc1 smi match: NC=S NC=S smi match: NC(N)=S NC(N)=S smi match: C=CN C=CN smi match: NOC=O NOC=O smi match: C1CN1 C1CN1 smi match: O=C1NNNN1 O=C1NNNN1 smi match: N=C(N)C(=N)N N=C(N)C(=N)N smi match: N=C(N)O N=C(N)O smi match: N=C(N)C(=N)S N=C(N)C(=N)S smi match: *C=N *C=N smi match: N=CC=O N=CC=O smi match: N=CS N=CS smi match: N=C=N N=C=N smi match: N=C=O N=C=O smi match: N=C=S N=C=S smi match: NOC(=O)O NOC(=O)O smi match: *C(O)=S *C(O)=S smi match: C=CO C=CO smi match: ON=CC=NO ON=CC=NO smi match: *C[SH](=O)=O *C[SH](=O)=O smi match: O=[SH](=O)O O=[SH](=O)O smi match: N#CS N#CS smi match: C=C(S)S C=C(S)S smi match: N=C(N)S N=C(N)S smi match: N=C(S)S N=C(S)S smi match: NC(=S)S NC(=S)S smi match: O=CNS O=CNS smi match: S S smi match: [SiH4] [SiH4] smi match: NS NS smi match: NCN NCN smi match: cC(c)(O)O cC(c)(O)O smi match: *C(c)O *C(c)O smi match: C=CS(c)(=O)=O C=CS(c)(=O)=O smi match: cS(=O)(=O)O cS(=O)(=O)O smi match: *c1ccccn1=O *c1ccccn1=O smi match: *c1ccccn1 *c1ccccn1 smi match: *c1nccccn1 *c1nccccn1 smi match: C1COCOC1 C1COCOC1 smi match: C=S C=S smi match: c=S c=S smi match: S=CS S=CS smi match: C=CN(=O)=O C=CN(=O)=O smi match: C=CN(=O)O C=CN(=O)O smi match: N=CC=O N=CC=O smi match: C=CS C=CS smi match: SC(S)(S)S SC(S)(S)S smi match: OS(O)(O)O OS(O)(O)O smi match: O=N(=O)C[SH](=O)=O O=N(=O)C[SH](=O)=O smi match: O=N(O)C[SH](=O)=O O=N(O)C[SH](=O)=O smi match: N#CS N#CS smi match: C=NO C=NO smi match: C=N[SH]=N C=N[SH]=N smi match: O=C(S)S O=C(S)S smi match: N=C(S)S N=C(S)S smi match: N=C(=N)S N=C(=N)S smi match: O=N=O O=N=O smi match: O=NO O=NO smi match: ONO ONO smi match: C1SCS1 C1SCS1 smi match: N=C=S N=C=S smi match: N=C=N N=C=N smi match: C1N=N1 C1N=N1 smi match: *CS *CS smi match: SC(S)=C(S)S SC(S)=C(S)S smi match: N=CC=NO N=CC=NO smi match: N#CCC#N N#CCC#N smi match: CON=O CON=O smi match: C=CN C=CN smi match: C=N[SH](=O)=O C=N[SH](=O)=O smi match: NN=O NN=O smi match: NC(=O)S NC(=O)S smi match: N#CS N#CS smi match: NC(=O)C(N)=O NC(=O)C(N)=O smi match: c=N c=N smi match: C1COCO1 C1COCO1 smi match: C=NN[SH](=O)=O C=NN[SH](=O)=O smi match: O=CC=O O=CC=O smi match: O=CNOC=O O=CNOC=O smi match: O=C1C=CC(=O)C=C1 O=C1C=CC(=O)C=C1 smi match: ONO ONO smi match: ON(~O)~O ON(~O)~O smi match: OC1COC(O)C1 OC1COC(O)C1 smi match: OC1CCOC1O OC1CCOC1O smi match: OC1CCOC(O)C1 OC1CCOC(O)C1 smi match: N=[N+]=N N=[N+]=N smi match: N#CN N#CN smi match: C=NN=C C=NN=C smi match: *CCN(C)C *CCN(C)C smi match: CNN CNN smi match: *CC *CC smi match: OCS OCS smi match: C1NO1 C1NO1 smi match: COS(C)(=O)=O COS(C)(=O)=O smi match: C1CO1 C1CO1 smi match: *c1-c-c-ccN1 *c1-c-c-ccN1 smi match: *C(*)=C *C(*)=C smi match: N#[NH+] N#[NH+] smi match: C#NO C#NO smi match: OOO OOO smi match: OO OO smi match: O~Cl(~O)~O O~Cl(~O)~O smi match: O~Cl(~O)(~O)~O O~Cl(~O)(~O)~O smi match: [OH]~C(~O)~O [OH]~C(~O)~O smi match: *N *N smi match: *P *P smi match: *S *S smi match: *C(*)(*)C=C *C(*)(*)C=C smi match: *C(*)(*)C=C *C(*)(*)C=C smi match: *C(*)C=C *C(*)C=C smi match: *CC=C *CC=C smi match: CN=C=O CN=C=O smi match: CN=C=S CN=C=S smi match: *C=O *C=O smi match: N=N N=N smi match: SS SS smi match: O=C1CCNC(=O)O1 O=C1CCNC(=O)O1 smi match: CSC(C)=N CSC(C)=N smi match: COC(C)=N COC(C)=N smi match: C=C=C C=C=C smi match: *C(=O)OC=O *C(=O)OC=O smi match: C=CC#N C=CC#N smi match: C=CC=O C=CC=O smi match: CC=CC(C)=O CC=CC(C)=O smi match: CC=CC(=O)OCC CC=CC(=O)OCC smi match: C#CC#N C#CC#N smi match: C#CC=O C#CC=O smi match: C#CC(=O)OCC C#CC(=O)OCC smi match: C#CC=O C#CC=O smi match: *C(=O)C#C *C(=O)C#C smi match: C=CC=O C=CC=O smi match: *C(*)(*)O *C(*)(*)O smi match: COS(=O)(=O)O COS(=O)(=O)O smi match: CS(=O)(=O)[O-] CS(=O)(=O)[O-] smi match: NS(=O)(=O)[O-] NS(=O)(=O)[O-] smi match: *C(*)(*)C=O *C(*)(*)C=O smi match: *C(*)(*)C=O *C(*)(*)C=O smi match: *C(*)C=O *C(*)C=O smi match: *CC=O *CC=O smi match: *C(*)(*)[SH](=O)=O *C(*)(*)[SH](=O)=O smi match: *C(*)(*)[SH](=O)=O *C(*)(*)[SH](=O)=O smi match: *C(*)[SH](=O)=O *C(*)[SH](=O)=O smi match: *C[SH](=O)=O *C[SH](=O)=O smi match: * * smi match: *1CC1 *1CC1 smi match: O=COC=O O=COC=O smi match: N=C=O N=C=O smi match: N=C=S N=C=S smi match: O~O O~O smi match: N~[SiH4] N~[SiH4] smi match: *P *P smi match: C=N=N C=N=N smi match: *N#[NH+] *N#[NH+] smi match: *S* *S* smi match: ** ** smi match: *CC* *CC* smi match: *O[SiH3] *O[SiH3] smi match: *OS(*)~O *OS(*)~O smi match: N~N~O N~N~O smi match: *N(~O)(~O)~O *N(~O)(~O)~O smi match: *[N+](=C)[O-] *[N+](=C)[O-] smi match: * * smi match: *C(*)NCN(*)* *C(*)NCN(*)* smi match: *OCC#N *OCC#N smi match: **C=C **C=C smi match: C=C[O-] C=C[O-] smi match: C=CO C=CO smi match: * * smi match: O=CON1C(=O)CCC1=O O=CON1C(=O)CCC1=O smi match: O=COn1ccnc1 O=COn1ccnc1 smi match: O=COc1c(F)c(F)c(F)c(F)c1F O=COc1c(F)c(F)c(F)c(F)c1F smi match: CC(C)(C)S CC(C)(C)S smi match: [CH2][CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~C [CH2][CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~[CH]~C smi match: [CH]=O [CH]=O smi match: C~[CH2]~[CH2]~[CH2]~[CH2]~[CH2]~C C~[CH2]~[CH2]~[CH2]~[CH2]~[CH2]~C smi match: SS SS smi match: [SH] [SH] smi match: *C* *C* smi match: * * smi match: C[nH3+] C[nH3+] smi match: cC(=N)N cC(=N)N smi match: O=CNO O=CNO smi match: NN NN smi match: * * smi match: *O[PH](=O)O* *O[PH](=O)O* smi match: * * smi match: * * smi match: * * smi match: *N=C(*)* *N=C(*)* smi match: *C(*)(*)C=O *C(*)(*)C=O smi match: CSC=O CSC=O smi match: * * smi match: O=CCl O=CCl smi match: *** *** smi match: *C=O *C=O smi match: CO CO smi match: CO CO smi match: CO CO smi match: CO CO smi match: CC=O CC=O smi match: *=* *=* smi match: *C *C smi match: C#C C#C smi match: *[CH]C=C *[CH]C=C smi match: cCC(=O)O cCC(=O)O smi match: *C(*)(*)C(=O)O *C(*)(*)C(=O)O smi match: CC(=O)C(=O)O CC(=O)C(=O)O smi match: C=CC(=O)O C=CC(=O)O smi match: N#CC(=O)O N#CC(=O)O smi match: O=C(O)CN(~O)~O O=C(O)CN(~O)~O smi match: *N(*)C*=O *N(*)C*=O smi match: O=*CO O=*CO smi match: *=C*=O *=C*=O smi match: *=CC#N *=CC#N smi match: *CO *CO smi match: ** ** smi match: *CO *CO smi match: *C(*)=O *C(*)=O smi match: * * smi match: *CC(=O)O *CC(=O)O smi match: CC(=O)OC(C)=O CC(=O)OC(C)=O smi match: *c *c smi match: cN(C)C cN(C)C smi match: c c smi match: *c *c smi match: *c *c smi match: **:*cF **:*cF smi match: cB(O)O cB(O)O smi match: N~N~N N~N~N smi match: *N=N* *N=N* smi match: *CCO *CCO smi match: *CCO *CCO smi match: *=CCC(=O)O *=CCC(=O)O smi match: O=C(O)CCO O=C(O)CCO smi match: *CCC(=O)O *CCC(=O)O smi match: CC(=O)CC(=O)O CC(=O)CC(=O)O smi match: *OC(=O)CC(C)=O *OC(=O)CC(C)=O smi match: *OC(*)=O *OC(*)=O smi match: *C(=O)O *C(=O)O smi match: O=CO O=CO smi match: *OC(=O)O* *OC(=O)O* smi match: * * smi match: *OC(=O)Cl *OC(=O)Cl smi match: *C#N *C#N smi match: NCC(=O)NCC=O NCC(=O)NCC=O smi match: SS SS smi match: * * smi match: *=* *=* smi match: *=* *=* smi match: *=* *=* smi match: *=* *=* smi match: C1CO1 C1CO1 smi match: *OC(*)=O *OC(*)=O smi match: * * smi match: *O*O *O*O smi match: COC(C)(C)O COC(C)(C)O smi match: *O *O smi match: ** ** smi match: C=NN C=NN smi match: C=NC=O C=NC=O smi match: * * smi match: C#NC C#NC smi match: CN=C=O CN=C=O smi match: CN=C=S CN=C=S smi match: *OC(*)(*)O* *OC(*)(*)O* smi match: *C(*)=O *C(*)=O smi match: C~C~C~C~C~C~C C~C~C~C~C~C~C smi match: *~*=O *~*=O smi match: *~*=O *~*=O smi match: O=C(O)CC(=O)O O=C(O)CC(=O)O smi match: * * smi match: *C#N *C#N smi match: *N(=O)~O *N(=O)~O smi match: N N smi match: O=C(O)C(=O)O O=C(O)C(=O)O smi match: C=NO C=NO smi match: O~O O~O smi match: cO cO smi match: O=P(~[OH])~O O=P(~[OH])~O smi match: CO~P(=O)~O CO~P(=O)~O smi match: O=P(~[OH])(~O)~O O=P(~[OH])(~O)~O smi match: CO~P(=O)(~O)~O CO~P(=O)(~O)~O smi match: O=P(~O)~O O=P(~O)~O smi match: O=P(~O)(~O)~O O=P(~O)(~O)~O smi match: CN CN smi match: O~*1~**~*(~O)~**~1 O~*1~**~*(~O)~**~1 smi match: * * smi match: *1~*~*~C2~C(~*~1)~*~*~C1~C3~*~*~*~C~3~*~*~C~2~1 *1~*~*~C2~C(~*~1)~*~*~C1~C3~*~*~*~C~3~*~*~C~2~1 smi match: CS(C)~O CS(C)~O smi match: CS(C)(~O)~O CS(C)(~O)~O smi match: CS(N)(~O)~O CS(N)(~O)~O smi match: CS(O)(~O)~O CS(O)(~O)~O smi match: COS(C)(~O)~O COS(C)(~O)~O smi match: *S(C)(~O)~O *S(C)(~O)~O smi match: CN(C)C CN(C)C smi match: *c1nnc(=N)s1 *c1nnc(=N)s1 smi match: *C(*)=S *C(*)=S smi match: *OC(*)=S *OC(*)=S smi match: * * smi match: CS CS smi match: cS cS smi match: NC(N)=S NC(N)=S smi match: * * smi match: ***** ***** smi match: NC(N)=O NC(N)=O [03:48:09] done [03:48:09] ------------------------------------- [03:48:09] Testing sf.net issue 280. [03:48:09] done [03:48:09] ------------------------------------- [03:48:09] Testing sf.net issue 285. [03:48:09] done [03:48:09] ----------------------- [03:48:09] Testing residue information handling on atoms [03:48:09] done [03:48:09] ----------------------- [03:48:09] Testing Github issue 149: cannot pickle unsanitized molecules [03:48:09] done [03:48:09] ----------------------- [03:48:09] Testing Github issue 713: Molecule serialization doesn't read/write atomic numbers above 128 [03:48:09] done [03:48:09] ----------------------- [03:48:09] Testing Github 1563: Add a canned Atom query for heavy atom degree [03:48:09] done [03:48:09] ----------------------- [03:48:09] Testing Github 1710: bonds that are STEREOCIS or STEREOTRANS cannot be depickled [03:48:09] done [03:48:09] ----------------------- [03:48:09] Testing Github 1999: pickling atom map numbers >127 gives negative values terminate called after throwing an instance of 'RDKit::MolPicklerException' what(): std::exception Start 32: graphmolMemTest1 25/142 Test #32: graphmolMemTest1 ................... Passed 0.03 sec Start 33: resMolSupplierTest 26/142 Test #6: pyBV ............................... Passed 1.57 sec Start 34: molBundleTest 27/142 Test #19: pyForceFieldConstraints ............ Passed 1.32 sec Start 35: test-valgrind 28/142 Test #34: molBundleTest ...................... Passed 0.09 sec Start 36: graphmolTestsCatch 29/142 Test #35: test-valgrind ...................... Passed 0.05 sec Start 37: testDepictor 30/142 Test #36: graphmolTestsCatch ................. Passed 0.10 sec Start 38: pyDepictor 31/142 Test #1: testDict ........................... Passed 2.15 sec Start 39: smiTest1 32/142 Test #39: smiTest1 ........................... Passed 0.20 sec Start 40: smiTest2 33/142 Test #40: smiTest2 ........................... Passed 0.05 sec Start 41: cxsmilesTest 34/142 Test #41: cxsmilesTest ....................... Passed 0.09 sec Start 42: smaTest1 35/142 Test #37: testDepictor ....................... Passed 0.81 sec Start 43: smiTestCatch 36/142 Test #43: smiTestCatch ....................... Passed 0.20 sec Start 44: fileParsersTest1 37/142 Test #44: fileParsersTest1 ................... Passed 0.08 sec Start 45: testMolSupplier 38/142 Test #42: smaTest1 ........................... Passed 0.36 sec Start 46: testMolWriter 39/142 Test #45: testMolSupplier .................... Passed 0.36 sec Start 47: testTplParser 40/142 Test #33: resMolSupplierTest ................. Passed 2.11 sec Start 48: testMol2ToMol 41/142 Test #47: testTplParser ...................... Passed 0.06 sec Start 49: testSequence 42/142 Test #48: testMol2ToMol ...................... Passed 0.12 sec Start 50: testExtendedStereoParsing 43/142 Test #49: testSequence ....................... Passed 0.15 sec Start 51: fileParsersCatchTest 44/142 Test #50: testExtendedStereoParsing .......... Passed 0.09 sec Start 52: testSubstructMatch 45/142 Test #46: testMolWriter ...................... Passed 0.57 sec Start 53: testReaction 46/142 Test #51: fileParsersCatchTest ............... Passed 0.08 sec Start 54: testReactionFingerprints 47/142 Test #54: testReactionFingerprints ........... Passed 0.08 sec Start 55: testEnumeration 48/142 Test #38: pyDepictor ......................... Passed 1.87 sec Start 56: rxnTestCatch 49/142 Test #56: rxnTestCatch ....................... Passed 0.11 sec Start 57: pyChemReactions 50/142 Test #53: testReaction ....................... Passed 0.53 sec Start 58: pyChemReactionEnumerations 51/142 Test #57: pyChemReactions .................... Passed 0.80 sec Start 59: pyChemReactionSanitize 52/142 Test #52: testSubstructMatch ................. Passed 1.20 sec Start 60: testChemTransforms 53/142 Test #60: testChemTransforms ................. Passed 0.32 sec Start 61: testSubgraphs1 54/142 Test #59: pyChemReactionSanitize ............. Passed 0.52 sec Start 62: testSubgraphs2 55/142 Test #62: testSubgraphs2 ..................... Passed 0.09 sec Start 63: filterCatalogTest 56/142 Test #25: graphmolMolOpsTest ................. Passed 5.05 sec Start 64: pyFilterCatalog 57/142 Test #61: testSubgraphs1 ..................... Passed 0.62 sec Start 65: testFragCatalog 58/142 Test #63: filterCatalogTest .................. Passed 0.44 sec Start 66: pyFragCatalog 59/142 Test #66: pyFragCatalog ...................... Passed 0.78 sec Start 67: testDescriptors 60/142 Test #58: pyChemReactionEnumerations ......... Passed 3.35 sec Start 68: testAUTOCORR2D 61/142 Test #65: testFragCatalog .................... Passed 2.42 sec Start 69: pyMolDescriptors 62/142 Test #68: testAUTOCORR2D ..................... Passed 1.23 sec Start 70: pyMolDescriptors3D 63/142 Test #69: pyMolDescriptors ................... Passed 1.00 sec Start 71: testFingerprints 64/142 Test #70: pyMolDescriptors3D ................. Passed 0.66 sec Start 72: testFingerprintGenerators 65/142 Test #72: testFingerprintGenerators .......... Passed 3.56 sec Start 73: pyTestGenerator 66/142 Test #73: pyTestGenerator .................... Passed 0.61 sec Start 74: testPartialCharges 67/142 Test #74: testPartialCharges ................. Passed 0.08 sec Start 75: pyPartialCharges 68/142 Test #64: pyFilterCatalog .................... Passed 8.40 sec Start 76: testMolTransforms 69/142 Test #76: testMolTransforms .................. Passed 0.09 sec Start 77: pyMolTransforms 70/142 Test #75: pyPartialCharges ................... Passed 1.17 sec Start 78: testMMFFForceFieldHelpers 71/142 Test #77: pyMolTransforms .................... Passed 0.86 sec Start 79: testUFFForceFieldHelpers 72/142 Test #67: testDescriptors .................... Passed 11.43 sec Start 80: testCrystalForceField 73/142 Test #80: testCrystalForceField .............. Passed 0.26 sec Start 81: pyForceFieldHelpers 74/142 Test #81: pyForceFieldHelpers ................ Passed 1.27 sec Start 82: testDistGeomHelpers 75/142 Test #71: testFingerprints ................... Passed 21.28 sec Start 83: pyDistGeomHelpers 76/142 Test #55: testEnumeration .................... Passed 34.31 sec Start 84: testMolAlign 77/142 Test #78: testMMFFForceFieldHelpers .......... Passed 41.56 sec Start 85: pyMolAlign 78/142 Test #18: testMMFFForceField ................. Passed 63.00 sec Start 86: testFeatures 79/142 Test #86: testFeatures ....................... Passed 0.11 sec Start 87: pyChemicalFeatures 80/142 Test #87: pyChemicalFeatures ................. Passed 1.46 sec Start 88: testShapeHelpers 81/142 Test #88: testShapeHelpers ................... Passed 0.14 sec Start 89: pyShapeHelpers 82/142 Test #89: pyShapeHelpers ..................... Passed 1.14 sec Start 90: testMolCatalog 83/142 Test #90: testMolCatalog ..................... Passed 0.09 sec Start 91: pyMolCatalog 84/142 Test #91: pyMolCatalog ....................... Passed 0.84 sec Start 92: moldraw2DTest1 85/142 Test #79: testUFFForceFieldHelpers ........... Passed 52.32 sec Start 93: moldraw2DRxnTest1 86/142 Test #93: moldraw2DRxnTest1 .................. Passed 0.16 sec Start 94: pyMolDraw2D 87/142 Test #94: pyMolDraw2D ........................ Passed 1.05 sec Start 95: testFMCS 88/142 Test #95: testFMCS ........................... Passed 2.64 sec Start 96: pyFMCS 89/142 Test #92: moldraw2DTest1 ..................... Passed 5.56 sec Start 97: FMCStest 90/142 Test #97: FMCStest ........................... Passed 0.08 sec Start 98: testMolHash 91/142 Test #98: testMolHash ........................ Passed 0.25 sec Start 99: pyMolHash 92/142 Test #99: pyMolHash .......................... Passed 0.67 sec Start 100: testMMPA 93/142 Test #96: pyFMCS ............................. Passed 2.78 sec Start 101: pyMMPA 94/142 Test #100: testMMPA ........................... Passed 0.42 sec Start 102: testStructChecker 95/142 Test #102: testStructChecker .................. Passed 0.30 sec Start 103: pyStructChecker 96/142 Test #103: pyStructChecker .................... Passed 0.91 sec Start 104: testReducedGraphs 97/142 Test #104: testReducedGraphs .................. Passed 0.18 sec Start 105: pyReducedGraphs 98/142 Test #105: pyReducedGraphs .................... Passed 0.67 sec Start 106: trajectoryTest 99/142 Test #106: trajectoryTest ..................... Passed 1.32 sec Start 107: substructLibraryTest 100/142 Test #107: substructLibraryTest ............... Passed 1.35 sec Start 108: pySubstructLibrary 101/142 Test #101: pyMMPA ............................. Passed 5.79 sec Start 109: testRGroupDecomp 102/142 Test #109: testRGroupDecomp ................... Passed 0.67 sec Start 110: pyRGroupDecomposition 103/142 Test #110: pyRGroupDecomposition .............. Passed 1.32 sec Start 111: molInterchangeTest1 104/142 Test #111: molInterchangeTest1 ................ Passed 0.13 sec Start 112: pyMolInterchange 105/142 Test #112: pyMolInterchange ................... Passed 0.68 sec Start 113: testSLNParse 106/142 Test #113: testSLNParse ....................... Passed 0.18 sec Start 114: pySLNParse 107/142 Test #114: pySLNParse ......................... Passed 0.68 sec Start 115: pyGraphMolWrap 108/142 Test #108: pySubstructLibrary ................. Passed 7.19 sec Start 116: pyTestConformerWrap 109/142 Test #116: pyTestConformerWrap ................ Passed 0.76 sec Start 117: pyTestTrajectory 110/142 Test #117: pyTestTrajectory ................... Passed 1.59 sec Start 118: pyTestThreads 111/142 Test #31: hanoiTest .......................... Passed 92.64 sec Start 119: molStandardizeTest 112/142 Test #85: pyMolAlign ......................... Passed 37.60 sec Start 120: molNormalizeTest 113/142 Test #120: molNormalizeTest ................... Passed 0.07 sec Start 121: molValidateTest 114/142 Test #121: molValidateTest .................... Passed 0.11 sec Start 122: molChargeTest 115/142 Test #119: molStandardizeTest ................. Passed 0.49 sec Start 123: molTautomerTest 116/142 Test #122: molChargeTest ...................... Passed 0.31 sec Start 124: molStandardizeSmallTest 117/142 Test #124: molStandardizeSmallTest ............ Passed 0.12 sec Start 125: molFragmentTest 118/142 Test #125: molFragmentTest .................... Passed 0.21 sec Start 126: pyMolStandardize 119/142 Test #126: pyMolStandardize ................... Passed 0.61 sec Start 127: testQuery 120/142 Test #127: testQuery .......................... Passed 0.01 sec Start 128: testMatCalc 121/142 Test #128: testMatCalc ........................ Passed 0.01 sec Start 129: pyMatCalc 122/142 Test #123: molTautomerTest .................... Passed 2.31 sec Start 130: testSimDivPickers 123/142 Test #130: testSimDivPickers .................. Passed 0.01 sec Start 131: pySimDivPickers 124/142 Test #129: pyMatCalc .......................... Passed 1.38 sec Start 132: pyRanker 125/142 Test #132: pyRanker ........................... Passed 0.37 sec Start 133: testChemicalFeatures 126/142 Test #133: testChemicalFeatures ............... Passed 0.01 sec Start 134: pyFeatures 127/142 Test #131: pySimDivPickers .................... Passed 0.72 sec Start 135: pythonTestDbCLI 128/142 Test #134: pyFeatures ......................... Passed 0.35 sec Start 136: pythonTestDirML 129/142 Test #118: pyTestThreads ...................... Passed 10.12 sec Start 137: pythonTestDirDataStructs 130/142 Test #137: pythonTestDirDataStructs ........... Passed 2.19 sec Start 138: pythonTestDirDbase 131/142 Test #138: pythonTestDirDbase ................. Passed 1.38 sec Start 139: pythonTestDirSimDivFilters 132/142 Test #139: pythonTestDirSimDivFilters ......... Passed 0.64 sec Start 140: pythonTestDirVLib 133/142 Test #140: pythonTestDirVLib .................. Passed 1.09 sec Start 141: pythonTestDirChem 134/142 Test #115: pyGraphMolWrap ..................... Passed 22.44 sec Start 142: pythonTestSping 135/142 Test #142: pythonTestSping .................... Passed 0.98 sec 136/142 Test #22: graphmolTest1 ...................... Passed 108.91 sec 137/142 Test #83: pyDistGeomHelpers .................. Passed 82.62 sec 138/142 Test #136: pythonTestDirML .................... Passed 25.51 sec 139/142 Test #135: pythonTestDbCLI .................... Passed 31.39 sec 140/142 Test #82: testDistGeomHelpers ................ Passed 144.03 sec 141/142 Test #84: testMolAlign ....................... Passed 185.35 sec 142/142 Test #141: pythonTestDirChem .................. Passed 169.29 sec 99% tests passed, 1 tests failed out of 142 Total Test time (real) = 273.02 sec The following tests FAILED: 28 - graphmoltestPickler (Child aborted) Errors while running CTest make[2]: *** [Makefile:133: test] Error 8 make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' dh_auto_test: cd obj-aarch64-linux-gnu && make -j8 test ARGS\+=-j8 returned exit code 2 make[1]: [debian/rules:106: override_dh_auto_test] Error 2 (ignored) make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' fakeroot debian/rules binary dh binary --with python2 --buildsystem=cmake --parallel dh_testroot -O--buildsystem=cmake -O--parallel dh_prep -O--buildsystem=cmake -O--parallel dh_installdirs -O--buildsystem=cmake -O--parallel dh_auto_install -O--buildsystem=cmake -O--parallel cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/rdkit-201809.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/rdkit-201809.1+dfsg -B/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/External/catch /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/External/catch /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/External/INCHI-API /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/External/INCHI-API /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /build/rdkit-201809.1+dfsg/External/INCHI-API/python/noinchi.py /build/rdkit-201809.1+dfsg/rdkit/Chem/inchi.py make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 0%] Built target catch make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= [ 0%] Built target inchi_support make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target hc [ 3%] Built target RDGeneral make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDBoost /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDBoost /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Catalogs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Catalogs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Query /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Query /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testRDValue.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testDict.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/RDBoost/CMakeFiles/RDBoost.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/DataStructs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'. make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target testRDValue make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend [ 3%] Built target Catalogs make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend [ 7%] Built target testQuery [ 7%] Built target testDict [ 7%] Built target DataStructs make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend [ 7%] Built target RDBoost make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= [ 8%] Built target EigenSolvers make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= [ 8%] Built target testMatrices make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testFPB.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testDataStructs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build [ 9%] Built target testFPB make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend [ 10%] Built target testDataStructs make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'. make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build [ 11%] Built target testMultiFPB make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build [ 12%] Built target RDGeometryLib [ 13%] Built target testMatCalc make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= [ 13%] Built target SimDivPickers make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= [ 13%] Built target rdMetricMatrixCalc make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 13%] Built target Clustering make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 14%] Built target InfoTheory make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend [ 14%] Built target testGrid make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color= make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 15%] Built target rdBase [ 15%] Built target testTransforms make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= [ 17%] Built target cDataStructs make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Data /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Data /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= [ 17%] Built target Alignment [ 18%] Built target rdGeometry make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 19%] Built target testSimDivPickers make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Data/CMakeFiles/cQuantize.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/GraphMol.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build [ 20%] Built target rdInfoTheory [ 20%] Built target rdSimDivPickers make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 20%] Built target ChemicalFeatures [ 20%] Built target cQuantize make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend [ 20%] Built target testAlignment make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= [ 25%] Built target GraphMol make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= [ 25%] Built target rdAlignment make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build [ 25%] Built target testChemicalFeatures [ 25%] Built target MolTransforms [ 25%] Built target PartialCharges make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend [ 25%] Built target SubstructMatch [ 25%] Built target Subgraphs make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= [ 26%] Built target MolCatalog make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= [ 26%] Built target Trajectory make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 28%] Built target SmilesParse make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 28%] Built target MolInterchange make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend [ 30%] Built target SLNParse [ 30%] Built target rdqueries [ 30%] Built target rdChemicalFeatures make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= [ 31%] Built target rdPartialCharges make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend [ 32%] Built target Depictor make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 32%] Built target rdMolTransforms make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 33%] Built target rdSLNParse make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build [ 34%] Built target testSLNParse [ 34%] Built target ReducedGraphs make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend [ 35%] Built target ShapeHelpers make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 36%] Built target Optimizer [ 36%] Built target rdMolInterchange make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build [ 36%] Built target rdtrajectory make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/test-valgrind.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build [ 37%] Built target test-valgrind [ 37%] Built target graphmolMemTest1 [ 37%] Built target graphmoltestCanon make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend [ 38%] Built target graphmolqueryTest make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target graphmolcpTest make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend [ 39%] Built target graphmolIterTest make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target FileParsers make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend [ 43%] Built target ChemTransforms make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build [ 44%] Built target smiTest2 [ 44%] Built target smaTest1 make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'. make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 45%] Built target FilterCatalog make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build [ 47%] Built target Fingerprints make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend [ 47%] Built target testSubgraphs1 make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= [ 48%] Built target testSubgraphs2 make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build [ 48%] Built target testPartialCharges make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= [ 48%] Built target testMolTransforms [ 49%] Built target MolChemicalFeatures make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= [ 50%] Built target FragCatalog make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= [ 51%] Built target testMolCatalog [ 51%] Built target rdMolCatalog make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 51%] Built target rdShapeHelpers [ 51%] Built target FMCS make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= [ 51%] Built target MMPA [ 51%] Built target testReducedGraphs make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= [ 51%] Built target rdReducedGraphs make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build [ 52%] Built target SubstructLibrary [ 52%] Built target molInterchangeTest1 make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'. make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build [ 54%] Built target rdchem make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color= [ 54%] Built target testOptimizer make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend [ 56%] Built target rdmolfiles make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/molBundleTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 56%] Built target graphmolMolOpsTest make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend [ 57%] Built target graphmoltestChirality [ 60%] Built target ForceField make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake --color= make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 60%] Built target molBundleTest make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 61%] Built target graphmoltestPickler make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color= [ 62%] Built target resMolSupplierTest make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build [ 62%] Built target testDepictor [ 62%] Built target graphmolTestsCatch make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 62%] Built target graphmoltestPicklerGlobalSetting make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 62%] Built target hanoiTest [ 62%] Built target rdDepictor make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color= [ 62%] Built target smiTest1 make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color= make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= [ 62%] Built target cxsmilesTest [ 62%] Built target smiTestCatch make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build [ 62%] Built target testExtendedStereoParsing make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build'. make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build [ 63%] Built target testMol2ToMol [ 64%] Built target fileParsersCatchTest [ 64%] Built target testMolWriter [ 64%] Built target testMolSupplier make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build [ 64%] Built target fileParsersTest1 make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 64%] Built target testTplParser make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= [ 64%] Built target testSequence make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend [ 64%] Built target testSubstructMatch make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build [ 64%] Built target testFragCatalog make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build [ 65%] Built target testChemTransforms [ 65%] Built target filterCatalogTest make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= [ 66%] Built target rdfragcatalog make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'. make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 67%] Built target rdfiltercatalog make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 69%] Built target Descriptors make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= [ 70%] Built target testFingerprints make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= [ 70%] Built target testFingerprintGenerators make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build'. make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 70%] Built target testFeatures make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 71%] Built target rdMolChemicalFeatures make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color= [ 71%] Built target testFMCS [ 71%] Built target rdFingerprintGenerator make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= [ 71%] Built target rdFMCS make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= [ 72%] Built target MolHash [ 73%] Built target FMCStest make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build [ 73%] Built target testMMPA make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build [ 74%] Built target rdMMPA make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color= [ 74%] Built target RGroupDecomposition make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 77%] Built target ForceFieldHelpers [ 77%] Built target StructChecker make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= [ 77%] Built target substructLibraryTest make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'. make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build [ 77%] Built target rdSubstructLibrary make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend [ 77%] Built target testDescriptors make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend [ 77%] Built target testAUTOCORR2D make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color= make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color= [ 80%] Built target ChemReactions make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build [ 80%] Built target rdMolDescriptors make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color= make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 81%] Built target rdMolHash make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend [ 81%] Built target testMolHash [ 81%] Built target testStructChecker make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/UFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/UFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color= [ 81%] Built target testRGroupDecomp [ 81%] Built target rdStructChecker make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= [ 82%] Built target trajectoryTest make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 82%] Built target rdRGroupDecomposition make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build [ 86%] Built target MolStandardize [ 86%] Built target DistGeometry make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color= make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend [ 86%] Built target MolAlign [ 87%] Built target graphmolTest1 make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 87%] Built target testUFFForceField make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 88%] Built target rdForceField make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend [ 89%] Built target testReaction make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'. make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build [ 90%] Built target testEnumeration [ 90%] Built target rxnTestCatch [ 90%] Built target rdForceFieldHelpers [ 90%] Built target testReactionFingerprints make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 91%] Built target rdChemReactions make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build [ 91%] Built target rdMolAlign [ 91%] Built target MolDraw2D make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 91%] Built target testShapeHelpers make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color= [ 92%] Built target molNormalizeTest [ 92%] Built target molValidateTest make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 93%] Built target molTautomerTest make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build [ 93%] Built target molFragmentTest make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= [ 94%] Built target molChargeTest make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend [ 94%] Built target molStandardizeTest make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build [ 94%] Built target molStandardizeSmallTest [ 95%] Built target rdMolStandardize make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build [ 96%] Built target DistGeomHelpers make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= [ 96%] Built target testDistGeom make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 96%] Built target DistGeom make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build [ 97%] Built target moldraw2DTest1 make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build [ 97%] Built target moldraw2DRxnTest1 make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 97%] Built target rdMolDraw2D make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build [ 97%] Built target rdmolops [ 98%] Built target testMMFFForceField [ 98%] Built target testMMFFForceFieldHelpers make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target testUFFForceFieldHelpers make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' [ 98%] Built target testDistGeomHelpers [ 98%] Built target testCrystalForceField [ 99%] Built target rdDistGeom [100%] Built target testMolAlign make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/cmake/rdkit/rdkit-targets.cmake -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/cmake/rdkit/rdkit-targets-none.cmake -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/cmake/rdkit/rdkit-config.cmake -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/cmake/rdkit/rdkit-config-version.cmake -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/test3.gif -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/test2.gif -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/test1.gif -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/spiral.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/retest.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/listutils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/fileutils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/comhack.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/chemutils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/chemdraw_qax.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/chemdraw.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/cactvs.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/12h.gif -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/utils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util/HTMLPiddler.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/testallps.ps -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pstests.pyc -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pidtest.pyc -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/testallps.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pstests.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pidtest.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/stringformat.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/pid.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/patches -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/patches/Imaging-1.1.1.diff -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/patches/Imaging-1.1-fixplugin-path -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/pagesizes.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/tkCanvas-with-scrollbars.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/formatted-strings.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/colors.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX/pidWxDc.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX/pidWX.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK/pidTK.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG/pidSVG.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab/pidReportLab.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/README -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/pidQt4.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/pidQt.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/pidPyart.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/Fontmapping.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/psmetrics.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/pidPS.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/latin1MetricsCache.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/fontinfo.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-8.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-8.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-24.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-24.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-18.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-18.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-14.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-14.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-12.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-12.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-10.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-10.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-8.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-8.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-24.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-24.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-18.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-18.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-14.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-14.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-12.pil -- Installing: 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-- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm -- Installing: 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Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/AngleConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/PositionConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Nonbonded.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Params.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Inversion.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/TorsionAngle.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/AngleBend.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/BondStretch.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/StretchBend.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/OopBend.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/Nonbonded.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/Contribs.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/Params.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeometry.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeometry.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeometry.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/BoundsMatrix.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/ChiralSet.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/ChiralViolationContrib.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/DistGeomUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/DistViolationContrib.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/FourthDimContrib.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/TriangleSmooth.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitCatalogs.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitCatalogs.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitCatalogs.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Catalogs/CatalogEntry.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Catalogs/Catalog.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Catalogs/CatalogParams.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitGraphMol.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitGraphMol.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitGraphMol.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Atom.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/atomic_data.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/AtomIterators.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Bond.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/BondIterators.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Canon.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Chirality.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Conformer.h -- Installing: 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/build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFileParsers.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFileParsers.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFileParsers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h -- Installing: 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/build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFilterCatalog.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFilterCatalog.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFilterCatalog.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFragCatalog.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFragCatalog.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFragCatalog.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h -- Installing: 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Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Property.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFingerprints.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFingerprints.so.1 -- Installing: 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/build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/TopologicalTorsionGenerator.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/FingerprintUtil.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFingerprintGenerator.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitPartialCharges.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitPartialCharges.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitPartialCharges.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolTransforms.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolTransforms.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolTransforms.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceFieldHelpers.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceFieldHelpers.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceFieldHelpers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeomHelpers.so.1.2018.09.1 -- Installing: 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/build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolChemicalFeatures.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolChemicalFeatures.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitShapeHelpers.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitShapeHelpers.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitShapeHelpers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolCatalog.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolCatalog.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolCatalog.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h -- Installing: 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/build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolHash.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolHash.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolHash.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolHash/MolHash.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.so -- Installing: 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/build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/Pattern.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/Stereo.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitReducedGraphs.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitReducedGraphs.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitReducedGraphs.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitTrajectory.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitTrajectory.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitTrajectory.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructLibrary.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructLibrary.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructLibrary.so -- Installing: 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/build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdtrajectory.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolStandardize.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolStandardize.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolStandardize.so -- Installing: 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to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.CrossValidate.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.ActFuncs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.CrossValidate.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.NetNode.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.Network.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.Trainers.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.Risk.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.Scoring.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.ScreenComposite.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.files.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.RDConfig.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.RDLogger.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.RDPaths.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.RDRandom.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.SimilarityPickers.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.TestRunner.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Filter.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Node.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbMolSupply.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbPickleSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SDSupply.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsMolFilter.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsRemover.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesDupeFilter.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesOutput.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesSupply.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.demo.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Output.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Supply.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Transform.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.six.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.cactvs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.chemdraw.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.chemdraw_qax.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.chemutils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.comhack.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.fileutils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.listutils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.spiral.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/CodingStandards.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/EnhancedStereo.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/FragmentCatalogs.html exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_or_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_cis_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_or2_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_trans_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo.ai exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo.inkscape.svg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo.lrg.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo_plain.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/FingerprintGenerators.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/MolStandardize.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-DummyCores.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-GenericCores.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-MutipleCores.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-RingSubstitution.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-StereoChemTest.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-example-lactam.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/compounds.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot1.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot2.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot3.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddingMolecules.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddingPoints.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/BuildingBoundsMatrix.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/EditingMolecules.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ExploringHits.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/FDefFile.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/FindingMappings.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/GeneratingStructures.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/GettingStarted.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Icon.ico exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ImproveAlignments.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Index.hhk exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Intro.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/MatchingPharmacophores.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/MethodOverview.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RD.css exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D-Splash.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhc exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/References.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot1.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot2.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/SavingResults.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ScoringAlignments.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Using.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ViewOptions.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/contents.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/index.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/rdkit/rdkit-config-version.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/rdkit/rdkit-config.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/rdkit/rdkit-targets-none.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/rdkit/rdkit-targets.cmake exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: librdkit-dev (47), librdkit1 (92), postgresql-11-rdkit (0), python-rdkit (1), rdkit-data (3), rdkit-doc (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed mkdir -p /build/rdkit-201809.1+dfsg/debian/rdkit-doc/usr/share/doc/rdkit/ cp /build/rdkit-201809.1+dfsg/Docs/Book/_build/latex/RDKit.pdf /build/rdkit-201809.1+dfsg/debian/rdkit-doc/usr/share/doc/rdkit/ cp -a /build/rdkit-201809.1+dfsg/Docs/Book/_build/html /build/rdkit-201809.1+dfsg/debian/rdkit-doc/usr/share/doc/rdkit/ pg_buildext install /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit build-%v postgresql-%v-rdkit ### install 11 ### make[2]: Entering directory '/build/rdkit-201809.1+dfsg/build-11' /bin/mkdir -p '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib' /bin/mkdir -p '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/share/postgresql/11/extension' /bin/mkdir -p '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/share/postgresql/11/extension' /usr/bin/install -c -m 755 rdkit.so '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/rdkit.so' /usr/bin/install -c -m 644 /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit.control '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/share/postgresql/11/extension/' /usr/bin/install -c -m 644 rdkit--3.7.sql '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/share/postgresql/11/extension/' /bin/mkdir -p '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode/rdkit' /bin/mkdir -p '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/ /usr/bin/install -c -m 644 rdkit_io.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 mol_op.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 bfp_op.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 sfp_op.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 rxn_op.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 rdkit_gist.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 bfp_gist.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 bfp_gin.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 low_gist.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 guc.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 cache.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 adapter.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 bitstring.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ cd '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode' && /usr/lib/llvm-7/bin/llvm-lto -thinlto -thinlto-action=thinlink -o rdkit.index.bc rdkit/rdkit_io.bc rdkit/mol_op.bc rdkit/bfp_op.bc rdkit/sfp_op.bc rdkit/rxn_op.bc rdkit/rdkit_gist.bc rdkit/bfp_gist.bc rdkit/bfp_gin.bc rdkit/low_gist.bc rdkit/guc.bc rdkit/cache.bc rdkit/adapter.bc rdkit/bitstring.bc make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/build-11' make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' dh_installdocs -O--buildsystem=cmake -O--parallel debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/rdkit-201809.1+dfsg' dh_installchangelogs ReleaseNotes.md make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' debian/rules override_dh_python2 make[1]: Entering directory '/build/rdkit-201809.1+dfsg' dh_python2 -ppython-rdkit I: dh_python2 fs:343: renaming rdBase.so to rdBase.aarch64-linux-gnu.so /usr/share/dh-python/dh_python2:67: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead 'libpython%s: %s', so_version, fn) W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdBase.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdChemReactions.so to rdChemReactions.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdChemReactions.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdChemicalFeatures.so to rdChemicalFeatures.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdChemicalFeatures.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdDepictor.so to rdDepictor.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdDepictor.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdDistGeom.so to rdDistGeom.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdDistGeom.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdFMCS.so to rdFMCS.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdFMCS.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdFingerprintGenerator.so to rdFingerprintGenerator.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdFingerprintGenerator.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdForceFieldHelpers.so to rdForceFieldHelpers.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdForceFieldHelpers.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdMMPA.so to rdMMPA.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMMPA.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolAlign.so to rdMolAlign.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolAlign.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolCatalog.so to rdMolCatalog.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolCatalog.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolChemicalFeatures.so to rdMolChemicalFeatures.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolChemicalFeatures.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolDescriptors.so to rdMolDescriptors.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolDescriptors.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolHash.so to rdMolHash.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolHash.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolInterchange.so to rdMolInterchange.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolInterchange.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolTransforms.so to rdMolTransforms.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolTransforms.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdPartialCharges.so to rdPartialCharges.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdPartialCharges.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdRGroupDecomposition.so to rdRGroupDecomposition.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdRGroupDecomposition.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdReducedGraphs.so to rdReducedGraphs.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdReducedGraphs.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdSLNParse.so to rdSLNParse.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSLNParse.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdShapeHelpers.so to rdShapeHelpers.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdShapeHelpers.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdStructChecker.so to rdStructChecker.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdStructChecker.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdSubstructLibrary.so to rdSubstructLibrary.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSubstructLibrary.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdchem.so to rdchem.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdchem.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdfiltercatalog.so to rdfiltercatalog.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdfiltercatalog.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdfragcatalog.so to rdfragcatalog.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdfragcatalog.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdmolfiles.so to rdmolfiles.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdmolfiles.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdmolops.so to rdmolops.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdmolops.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdqueries.so to rdqueries.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdqueries.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdtrajectory.so to rdtrajectory.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdtrajectory.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolDraw2D.so to rdMolDraw2D.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolDraw2D.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolStandardize.so to rdMolStandardize.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolStandardize.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdMetricMatrixCalc.so to rdMetricMatrixCalc.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMetricMatrixCalc.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming cDataStructs.so to cDataStructs.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: cDataStructs.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming DistGeom.so to DistGeom.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: DistGeom.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdForceField.so to rdForceField.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdForceField.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdGeometry.so to rdGeometry.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdGeometry.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming Clustering.so to Clustering.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: Clustering.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming cQuantize.so to cQuantize.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: cQuantize.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdInfoTheory.so to rdInfoTheory.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdInfoTheory.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdAlignment.so to rdAlignment.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdAlignment.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming rdSimDivPickers.so to rdSimDivPickers.aarch64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSimDivPickers.aarch64-linux-gnu.so dh_numpy -ppython-rdkit make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' dh_installinit -O--buildsystem=cmake -O--parallel dh_lintian -O--buildsystem=cmake -O--parallel dh_perl -O--buildsystem=cmake -O--parallel dh_link -O--buildsystem=cmake -O--parallel dh_strip_nondeterminism -O--buildsystem=cmake -O--parallel dh_compress -O--buildsystem=cmake -O--parallel dh_fixperms -O--buildsystem=cmake -O--parallel dh_missing -O--buildsystem=cmake -O--parallel dh_strip -O--buildsystem=cmake -O--parallel dh_makeshlibs -O--buildsystem=cmake -O--parallel dh_shlibdeps -O--buildsystem=cmake -O--parallel dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librdkit1/usr/lib/libRDKitDistGeomHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitDistGeometry.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitMolAlign.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitOptimizer.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceFieldHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceField.so.1.2018.09.1 were not linked against libRDKitTrajectory.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librdkit1/usr/lib/libRDKitDistGeomHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitDistGeometry.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitMolAlign.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceFieldHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceField.so.1.2018.09.1 were not linked against libRDKitOptimizer.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdtrajectory.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdRGroupDecomposition.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolInterchange.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFingerprintGenerator.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSubstructLibrary.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.aarch64-linux-gnu.so were not linked against libcoordgenlibs.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.aarch64-linux-gnu.so were not linked against libRDKitOptimizer.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Geometry/rdGeometry.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clustering.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdtrajectory.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Numerics/rdAlignment.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdRGroupDecomposition.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolInterchange.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFingerprintGenerator.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataStructs/cDataStructs.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/rdBase.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSubstructLibrary.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Data/cQuantize.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.aarch64-linux-gnu.so were not linked against libboost_serialization.so.1.67.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.aarch64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.aarch64-linux-gnu.so were not linked against libRDKitEigenSolvers.so.1 (they use none of the library's symbols) dh_installdeb -O--buildsystem=cmake -O--parallel dh_gencontrol -O--buildsystem=cmake -O--parallel dpkg-gencontrol: warning: Depends field of package rdkit-data: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package rdkit-doc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package postgresql-11-rdkit: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package rdkit-data: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package librdkit1: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: Depends field of package librdkit-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package librdkit-dev: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package rdkit-doc: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package postgresql-11-rdkit: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package librdkit1: substitution variable ${python:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake -O--parallel dh_builddeb -O--buildsystem=cmake -O--parallel dpkg-deb: building package 'python-rdkit' in '../python-rdkit_201809.1+dfsg-6_arm64.deb'. dpkg-deb: building package 'librdkit1' in '../librdkit1_201809.1+dfsg-6_arm64.deb'. dpkg-deb: building package 'librdkit-dev' in '../librdkit-dev_201809.1+dfsg-6_arm64.deb'. dpkg-deb: building package 'rdkit-doc' in '../rdkit-doc_201809.1+dfsg-6_all.deb'. dpkg-deb: building package 'postgresql-11-rdkit-dbgsym' in '../postgresql-11-rdkit-dbgsym_201809.1+dfsg-6_arm64.deb'. dpkg-deb: building package 'postgresql-11-rdkit' in '../postgresql-11-rdkit_201809.1+dfsg-6_arm64.deb'. dpkg-deb: building package 'librdkit1-dbgsym' in '../librdkit1-dbgsym_201809.1+dfsg-6_arm64.deb'. dpkg-deb: building package 'python-rdkit-dbgsym' in '../python-rdkit-dbgsym_201809.1+dfsg-6_arm64.deb'. dpkg-deb: building package 'rdkit-data' in '../rdkit-data_201809.1+dfsg-6_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../rdkit_201809.1+dfsg-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1126 and its subdirectories I: Current time: Mon Sep 6 03:54:34 -12 2021 I: pbuilder-time-stamp: 1630943674