I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 12 20:27:00 -12 2020 I: pbuilder-time-stamp: 1602577620 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pbcommand_1.1.1-1.dsc] I: copying [./python-pbcommand_1.1.1.orig.tar.gz] I: copying [./python-pbcommand_1.1.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Oct 31 06:17:57 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pbcommand_1.1.1-1.dsc dpkg-source: info: extracting python-pbcommand in python-pbcommand-1.1.1 dpkg-source: info: unpacking python-pbcommand_1.1.1.orig.tar.gz dpkg-source: info: unpacking python-pbcommand_1.1.1-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/14917/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='14917' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.mEdw0WFb0R/pbuilderrc_TaNF --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.mEdw0WFb0R/b1 --logfile b1/build.log python-pbcommand_1.1.1-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled12-arm64 4.4.0-190-generic #220-Ubuntu SMP Fri Aug 28 23:03:33 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Oct 6 20:26 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/14917/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, python-all, python-setuptools, python-xmlbuilder, python-jsonschema, python-avro, python-numpy, python-requests, python-iso8601, python-nose, python-pbcore dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python-all; however: Package python-all is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python-xmlbuilder; however: Package python-xmlbuilder is not installed. pbuilder-satisfydepends-dummy depends on python-jsonschema; however: Package python-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on python-avro; however: Package python-avro is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-requests; however: Package python-requests is not installed. pbuilder-satisfydepends-dummy depends on python-iso8601; however: Package python-iso8601 is not installed. pbuilder-satisfydepends-dummy depends on python-nose; however: Package python-nose is not installed. pbuilder-satisfydepends-dummy depends on python-pbcore; however: Package python-pbcore is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhts2{a} libicu63{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} openssl{a} po-debconf{a} python{a} python-all{a} python-avro{a} python-certifi{a} python-chardet{a} python-funcsigs{a} python-functools32{a} python-idna{a} python-iso8601{a} python-jsonschema{a} python-minimal{a} python-mock{a} python-nose{a} python-numpy{a} python-pbcore{a} python-pbr{a} python-pkg-resources{a} python-pysam{a} python-requests{a} python-setuptools{a} python-six{a} python-urllib3{a} python-xmlbuilder{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python-cryptography python-h5py python-ipaddress python-openssl shared-mime-info wget xdg-user-dirs 0 packages upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 47.7 MB of archives. After unpacking 169 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 python-xmlbuilder all 1.0-1 [5884 B] Get: 23 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u2 [588 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u2 [1404 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u2 [1641 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u2 [330 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 openssl arm64 1.1.1d-0+deb10u3 [823 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 ca-certificates all 20190110 [157 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 python3-distutils all 3.7.3-1 [142 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 dh-python all 3.20190308 [99.3 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libnghttp2-14 arm64 1.36.0-2+deb10u1 [81.9 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 libcurl3-gnutls arm64 7.64.0-4+deb10u1 [310 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 libdeflate0 arm64 1.2-1 [51.4 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 libhts2 arm64 1.9-11 [277 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 python-all arm64 2.7.16-1 [1044 B] Get: 83 http://deb.debian.org/debian buster/main arm64 python-avro all 1.8.2+dfsg-2 [59.4 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 python-certifi all 2018.8.24-1 [140 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 python-chardet all 3.0.4-3 [80.6 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 python-funcsigs all 1.0.2-4 [13.7 kB] Get: 88 http://deb.debian.org/debian buster/main arm64 python-functools32 all 3.2.3.2-3 [11.0 kB] Get: 89 http://deb.debian.org/debian buster/main arm64 python-idna all 2.6-1 [34.1 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 python-iso8601 all 0.1.11-1 [12.7 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 python-setuptools all 40.8.0-1 [382 kB] Get: 92 http://deb.debian.org/debian buster/main arm64 python-six all 1.12.0-1 [15.7 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 python-pbr all 4.2.0-5 [56.5 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 python-mock all 2.0.0-4 [60.2 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 python-jsonschema all 2.6.0-4 [33.7 kB] Get: 96 http://deb.debian.org/debian buster/main arm64 python-nose all 1.3.7-4 [132 kB] Get: 97 http://deb.debian.org/debian buster/main arm64 python-numpy arm64 1:1.16.2-1 [1975 kB] Get: 98 http://deb.debian.org/debian buster/main arm64 python-pysam arm64 0.15.2+ds-2 [1396 kB] Get: 99 http://deb.debian.org/debian buster/main arm64 python-pbcore all 1.6.5+dfsg-1 [9100 kB] Get: 100 http://deb.debian.org/debian buster/main arm64 python-urllib3 all 1.24.1-1 [97.0 kB] Get: 101 http://deb.debian.org/debian buster/main arm64 python-requests all 2.21.0-1 [67.1 kB] Fetched 47.7 MB in 6s (8594 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:arm64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_arm64.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_arm64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:arm64. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u3_arm64.deb ... Unpacking libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:arm64. Preparing to unpack .../14-libreadline7_7.0-5_arm64.deb ... Unpacking libreadline7:arm64 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:arm64. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_arm64.deb ... Unpacking libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_arm64.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:arm64. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_arm64.deb ... Unpacking libpython2-stdlib:arm64 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:arm64. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_arm64.deb ... Unpacking libpython-stdlib:arm64 (2.7.16-1) ... Setting up libpython2.7-minimal:arm64 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20631 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_arm64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20664 files and directories currently installed.) Preparing to unpack .../python_2.7.16-1_arm64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package python-xmlbuilder. Preparing to unpack .../python-xmlbuilder_1.0-1_all.deb ... Unpacking python-xmlbuilder (1.0-1) ... Selecting previously unselected package libpython3.7-minimal:arm64. Preparing to unpack .../libpython3.7-minimal_3.7.3-2+deb10u2_arm64.deb ... Unpacking libpython3.7-minimal:arm64 (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u2_arm64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u2) ... Setting up libssl1.1:arm64 (1.1.1d-0+deb10u3) ... Setting up libpython3.7-minimal:arm64 (3.7.3-2+deb10u2) ... Setting up libexpat1:arm64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20928 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_arm64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:arm64. Preparing to unpack .../libmpdec2_2.4.2-2_arm64.deb ... Unpacking libmpdec2:arm64 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:arm64. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2+deb10u2_arm64.deb ... Unpacking libpython3.7-stdlib:arm64 (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u2_arm64.deb ... Unpacking python3.7 (3.7.3-2+deb10u2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21340 files and directories currently installed.) Preparing to unpack .../00-python3_3.7.3-1_arm64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.19.8.1-9_arm64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../06-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-2_arm64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../09-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../10-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../11-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package openssl. Preparing to unpack .../12-openssl_1.1.1d-0+deb10u3_arm64.deb ... Unpacking openssl (1.1.1d-0+deb10u3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../13-ca-certificates_20190110_all.deb ... Unpacking ca-certificates (20190110) ... Selecting previously unselected package libtool. Preparing to unpack .../14-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../15-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../16-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../17-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../18-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../19-libelf1_0.176-1.1_arm64.deb ... Unpacking libelf1:arm64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.12-3_arm64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../21-libglib2.0-0_2.58.3-2+deb10u2_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:arm64. Preparing to unpack .../22-libicu63_63.1-6+deb10u1_arm64.deb ... Unpacking libicu63:arm64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../23-libxml2_2.9.4+dfsg1-7+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../24-libcroco3_0.6.12-3_arm64.deb ... Unpacking libcroco3:arm64 (0.6.12-3) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../25-libncurses6_6.1+20181013-2+deb10u2_arm64.deb ... Unpacking libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.19.8.1-9_arm64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../30-python3-lib2to3_3.7.3-1_all.deb ... Unpacking python3-lib2to3 (3.7.3-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../31-python3-distutils_3.7.3-1_all.deb ... Unpacking python3-distutils (3.7.3-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../32-dh-python_3.20190308_all.deb ... Unpacking dh-python (3.20190308) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../33-libgfortran5_8.3.0-6_arm64.deb ... Unpacking libgfortran5:arm64 (8.3.0-6) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../34-libblas3_3.8.0-2_arm64.deb ... Unpacking libblas3:arm64 (3.8.0-2) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../35-libkeyutils1_1.6-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6-6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../36-libkrb5support0_1.17-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.17-3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../37-libk5crypto3_1.17-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.17-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../38-libkrb5-3_1.17-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../39-libgssapi-krb5-2_1.17-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.17-3) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../40-libsasl2-modules-db_2.1.27+dfsg-1+deb10u1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../41-libsasl2-2_2.1.27+dfsg-1+deb10u1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../42-libldap-common_2.4.47+dfsg-3+deb10u2_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3+deb10u2) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../43-libldap-2.4-2_2.4.47+dfsg-3+deb10u2_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../44-libnghttp2-14_1.36.0-2+deb10u1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.36.0-2+deb10u1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../45-libpsl5_0.20.2-2_arm64.deb ... Unpacking libpsl5:arm64 (0.20.2-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../46-librtmp1_2.4+20151223.gitfa8646d.1-2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../47-libssh2-1_1.8.0-2.1_arm64.deb ... Unpacking libssh2-1:arm64 (1.8.0-2.1) ... Selecting previously unselected package libcurl3-gnutls:arm64. Preparing to unpack .../48-libcurl3-gnutls_7.64.0-4+deb10u1_arm64.deb ... Unpacking libcurl3-gnutls:arm64 (7.64.0-4+deb10u1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../49-libdeflate0_1.2-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.2-1) ... Selecting previously unselected package libhts2:arm64. Preparing to unpack .../50-libhts2_1.9-11_arm64.deb ... Unpacking libhts2:arm64 (1.9-11) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../51-liblapack3_3.8.0-2_arm64.deb ... Unpacking liblapack3:arm64 (3.8.0-2) ... Selecting previously unselected package python-all. Preparing to unpack .../52-python-all_2.7.16-1_arm64.deb ... Unpacking python-all (2.7.16-1) ... Selecting previously unselected package python-avro. Preparing to unpack .../53-python-avro_1.8.2+dfsg-2_all.deb ... Unpacking python-avro (1.8.2+dfsg-2) ... Selecting previously unselected package python-certifi. Preparing to unpack .../54-python-certifi_2018.8.24-1_all.deb ... Unpacking python-certifi (2018.8.24-1) ... Selecting previously unselected package python-pkg-resources. Preparing to unpack .../55-python-pkg-resources_40.8.0-1_all.deb ... Unpacking python-pkg-resources (40.8.0-1) ... Selecting previously unselected package python-chardet. Preparing to unpack .../56-python-chardet_3.0.4-3_all.deb ... Unpacking python-chardet (3.0.4-3) ... Selecting previously unselected package python-funcsigs. Preparing to unpack .../57-python-funcsigs_1.0.2-4_all.deb ... Unpacking python-funcsigs (1.0.2-4) ... Selecting previously unselected package python-functools32. Preparing to unpack .../58-python-functools32_3.2.3.2-3_all.deb ... Unpacking python-functools32 (3.2.3.2-3) ... Selecting previously unselected package python-idna. Preparing to unpack .../59-python-idna_2.6-1_all.deb ... Unpacking python-idna (2.6-1) ... Selecting previously unselected package python-iso8601. Preparing to unpack .../60-python-iso8601_0.1.11-1_all.deb ... Unpacking python-iso8601 (0.1.11-1) ... Selecting previously unselected package python-setuptools. Preparing to unpack .../61-python-setuptools_40.8.0-1_all.deb ... Unpacking python-setuptools (40.8.0-1) ... Selecting previously unselected package python-six. Preparing to unpack .../62-python-six_1.12.0-1_all.deb ... Unpacking python-six (1.12.0-1) ... Selecting previously unselected package python-pbr. Preparing to unpack .../63-python-pbr_4.2.0-5_all.deb ... Unpacking python-pbr (4.2.0-5) ... Selecting previously unselected package python-mock. Preparing to unpack .../64-python-mock_2.0.0-4_all.deb ... Unpacking python-mock (2.0.0-4) ... Selecting previously unselected package python-jsonschema. Preparing to unpack .../65-python-jsonschema_2.6.0-4_all.deb ... Unpacking python-jsonschema (2.6.0-4) ... Selecting previously unselected package python-nose. Preparing to unpack .../66-python-nose_1.3.7-4_all.deb ... Unpacking python-nose (1.3.7-4) ... Selecting previously unselected package python-numpy. Preparing to unpack .../67-python-numpy_1%3a1.16.2-1_arm64.deb ... Unpacking python-numpy (1:1.16.2-1) ... Selecting previously unselected package python-pysam. Preparing to unpack .../68-python-pysam_0.15.2+ds-2_arm64.deb ... Unpacking python-pysam (0.15.2+ds-2) ... Selecting previously unselected package python-pbcore. Preparing to unpack .../69-python-pbcore_1.6.5+dfsg-1_all.deb ... Unpacking python-pbcore (1.6.5+dfsg-1) ... Selecting previously unselected package python-urllib3. Preparing to unpack .../70-python-urllib3_1.24.1-1_all.deb ... Unpacking python-urllib3 (1.24.1-1) ... Selecting previously unselected package python-requests. Preparing to unpack .../71-python-requests_2.21.0-1_all.deb ... Unpacking python-requests (2.21.0-1) ... Setting up libpipeline1:arm64 (1.5.1-2) ... Setting up libkeyutils1:arm64 (1.6-6) ... Setting up libpsl5:arm64 (0.20.2-2) ... Setting up mime-support (3.62) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libnghttp2-14:arm64 (1.36.0-2+deb10u1) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up libdeflate0:arm64 (1.2-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u2) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up libkrb5support0:arm64 (1.17-3) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:arm64 (1.17-3) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:arm64 (8.3.0-6) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libssh2-1:arm64 (1.8.0-2.1) ... Setting up libkrb5-3:arm64 (1.17-3) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:arm64 (3.7.3-2+deb10u2) ... Setting up libtool (2.4.6-9) ... Setting up libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libblas3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libpython3-stdlib:arm64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u2) ... Setting up liblapack3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:arm64 (2.7.16-1) ... Setting up libcurl3-gnutls:arm64 (7.64.0-4+deb10u1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up libhts2:arm64 (1.9-11) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up python-xmlbuilder (1.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python-iso8601 (0.1.11-1) ... Setting up python-all (2.7.16-1) ... Setting up python-certifi (2018.8.24-1) ... Setting up python-six (1.12.0-1) ... Setting up python-idna (2.6-1) ... Setting up python-setuptools (40.8.0-1) ... Setting up python-avro (1.8.2+dfsg-2) ... Setting up python-funcsigs (1.0.2-4) ... Setting up python-functools32 (3.2.3.2-3) ... Setting up python-chardet (3.0.4-3) ... Setting up python-pbr (4.2.0-5) ... update-alternatives: using /usr/bin/python2-pbr to provide /usr/bin/pbr (pbr) in auto mode Setting up python-urllib3 (1.24.1-1) ... Setting up python-pysam (0.15.2+ds-2) ... Setting up python-numpy (1:1.16.2-1) ... Setting up python-nose (1.3.7-4) ... Setting up python-mock (2.0.0-4) ... Setting up python-requests (2.21.0-1) ... Setting up python-pbcore (1.6.5+dfsg-1) ... Setting up python-jsonschema (2.6.0-4) ... update-alternatives: using /usr/bin/python2-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-pbcommand-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-pbcommand dpkg-buildpackage: info: source version 1.1.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean LC_ALL=C.UTF-8 dh clean --with python2 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build LC_ALL=C.UTF-8 dh build --with python2 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_validators.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_utils.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_testkit.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_schema_validation.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_resolver.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_pb_io_tool_contract_v1.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_pb_io_tool_contract.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_pb_io_report.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_pb_io_conditions.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_pb_io_common.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_parsers.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_report_table.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_report_plotgroup.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_report_plot.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_report_column.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_report_attribute.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_report.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_common_pacbio_options.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_models_common.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_load_resolved_tool_contract.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_engine_runner.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_e2e_example_apps.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/test_common_cmdline_core.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/base_utils.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests copying tests/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand copying pbcommand/validators.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand copying pbcommand/utils.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand copying pbcommand/resolver.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand copying pbcommand/interactive_resolver.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand copying pbcommand/common_options.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand copying pbcommand/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/nunit.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/core.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/base_utils.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services copying pbcommand/services/utils.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services copying pbcommand/services/models.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services copying pbcommand/services/cli.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services copying pbcommand/services/_service_access_layer.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services copying pbcommand/services/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/tool_contract_io.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/report.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/conditions.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/common.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models copying pbcommand/models/tool_contract.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models copying pbcommand/models/report.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models copying pbcommand/models/parser.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models copying pbcommand/models/conditions.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models copying pbcommand/models/common.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models copying pbcommand/models/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/engine copying pbcommand/engine/runner.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/engine copying pbcommand/engine/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/engine creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli copying pbcommand/cli/utils.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli copying pbcommand/cli/quick.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli copying pbcommand/cli/core.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli copying pbcommand/cli/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli creating /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/template_subparser_simple.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/template_simple.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_txt_app.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_simple_app.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_scatter_fasta_app.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_quick_hello_world.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_mixed_app.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_gather_fasta_app.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/dev_app.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/__init__.py -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples copying pbcommand/schemas/tool_contract.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/resolved_tool_contract.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/report_spec.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/pipeline_template_view_rules.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/pipeline_presets_simple.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/pipeline_presets.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/pbreport.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/datastore_view_rules.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/datastore.avsc -> /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-pbcommand-1.1.1' PYTHONPATH=/build/python-pbcommand-1.1.1 \ nosetests -s --verbose --logging-config log_nose.cfg --where=tests test_01 (tests.test_common_cmdline_core.SimpleTest) ... [INFO] 2020-10-13 08:28:36,856Z [tests.test_common_cmdline_core _pacbio_main_runner 130] Using pbcommand v1.1.1 [INFO] 2020-10-13 08:28:36,857Z [tests.test_common_cmdline_core _pacbio_main_runner 131] completed setting up logger with [INFO] 2020-10-13 08:28:36,857Z [tests.test_common_cmdline_core _pacbio_main_runner 132] log opts {'file_name': None, 'level': 10} [INFO] 2020-10-13 08:28:36,857Z [tests.test_common_cmdline_core args_runner 14] Running args: (Namespace(debug=True, example_file='/path/to/my_fake_file.txt'),) [INFO] 2020-10-13 08:28:36,857Z [tests.test_common_cmdline_core _pacbio_main_runner 155] exiting with return code 0 in 0.00 sec. ok test_run_e2e (tests.test_e2e_example_apps.PbTestApp) ... ok test_run_e2e (tests.test_e2e_example_apps.TestBadChoiceValue) ... [DEBUG] 2020-10-13 08:28:36,867Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_mixed_app --emit-tool-contract [DEBUG] 2020-10-13 08:28:36,868Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2020-10-13 08:28:36,868Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpC7IiR5-rtc-test [DEBUG] 2020-10-13 08:28:37,517Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpC7IiR5-rtc-test/tmpqLcO2k-TestBadChoiceValue-tool_contract.json [INFO] 2020-10-13 08:28:37,519Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC ok test_run_e2e (tests.test_e2e_example_apps.TestOptionTypes) ... [DEBUG] 2020-10-13 08:28:37,523Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_mixed_app --emit-tool-contract [DEBUG] 2020-10-13 08:28:37,523Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2020-10-13 08:28:37,523Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpxHwGYb-rtc-test [DEBUG] 2020-10-13 08:28:37,942Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpxHwGYb-rtc-test/tmp_VvqsI-TestOptionTypes-tool_contract.json [INFO] 2020-10-13 08:28:37,944Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2020-10-13 08:28:37,947Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmpxHwGYb-rtc-test/tmpjokXolresolved_tool_contract.json [INFO] 2020-10-13 08:28:37,947Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_mixed_app --resolved-tool-contract /tmp/tmpxHwGYb-rtc-test/tmpjokXolresolved_tool_contract.json' [INFO] 2020-10-13 08:28:38,519Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_mixed_app --emit-tool-contract [DEBUG] 2020-10-13 08:28:38,519Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2020-10-13 08:28:38,520Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_mixed_app [DEBUG] 2020-10-13 08:28:38,520Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmpxHwGYb-rtc-test/example.report.json'] ok test_run_e2e (tests.test_e2e_example_apps.TestQuickCustomTxtCustomOuts) ... [DEBUG] 2020-10-13 08:28:38,523Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_txt_custom_outs [DEBUG] 2020-10-13 08:28:38,523Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2020-10-13 08:28:38,523Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmp8VMx40-rtc-test [DEBUG] 2020-10-13 08:28:39,097Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmp8VMx40-rtc-test/tmpx5kWqS-TestQuickCustomTxtCustomOuts-tool_contract.json [INFO] 2020-10-13 08:28:39,098Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2020-10-13 08:28:39,100Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmp8VMx40-rtc-test/tmpOv0thzresolved_tool_contract.json [INFO] 2020-10-13 08:28:39,100Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_quick_hello_world run-rtc /tmp/tmp8VMx40-rtc-test/tmpOv0thzresolved_tool_contract.json' [INFO] 2020-10-13 08:28:39,500Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_txt_custom_outs [DEBUG] 2020-10-13 08:28:39,500Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2020-10-13 08:28:39,500Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_txt_custom_outs [DEBUG] 2020-10-13 08:28:39,501Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmp8VMx40-rtc-test/PacBio.FileTypes.txt_file_0.txt', '/tmp/tmp8VMx40-rtc-test/PacBio.FileTypes.txt_file_1.txt'] ok test_run_e2e (tests.test_e2e_example_apps.TestQuickDevHelloWorld) ... [DEBUG] 2020-10-13 08:28:39,504Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_qhello_world [DEBUG] 2020-10-13 08:28:39,504Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2020-10-13 08:28:39,504Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpphOXrg-rtc-test [DEBUG] 2020-10-13 08:28:39,895Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpphOXrg-rtc-test/tmpyDfP6a-TestQuickDevHelloWorld-tool_contract.json [INFO] 2020-10-13 08:28:39,896Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2020-10-13 08:28:39,898Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmpphOXrg-rtc-test/tmpRJgovnresolved_tool_contract.json [INFO] 2020-10-13 08:28:39,898Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_quick_hello_world run-rtc /tmp/tmpphOXrg-rtc-test/tmpRJgovnresolved_tool_contract.json' [INFO] 2020-10-13 08:28:40,283Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_qhello_world [DEBUG] 2020-10-13 08:28:40,283Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2020-10-13 08:28:40,283Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_qhello_world [DEBUG] 2020-10-13 08:28:40,284Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmpphOXrg-rtc-test/file.fasta'] ok test_run_e2e (tests.test_e2e_example_apps.TestQuickOptionTypes) ... [DEBUG] 2020-10-13 08:28:40,286Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_test_options [DEBUG] 2020-10-13 08:28:40,287Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2020-10-13 08:28:40,287Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpxyglU1-rtc-test [DEBUG] 2020-10-13 08:28:40,700Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpxyglU1-rtc-test/tmp6TEChI-TestQuickOptionTypes-tool_contract.json [INFO] 2020-10-13 08:28:40,702Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2020-10-13 08:28:40,704Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmpxyglU1-rtc-test/tmpkL8ysEresolved_tool_contract.json [INFO] 2020-10-13 08:28:40,704Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_quick_hello_world run-rtc /tmp/tmpxyglU1-rtc-test/tmpkL8ysEresolved_tool_contract.json' [INFO] 2020-10-13 08:28:41,129Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_test_options [DEBUG] 2020-10-13 08:28:41,130Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2020-10-13 08:28:41,130Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_test_options [DEBUG] 2020-10-13 08:28:41,130Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmpxyglU1-rtc-test/file.txt'] ok test_run_e2e (tests.test_e2e_example_apps.TestQuickTxt) ... [DEBUG] 2020-10-13 08:28:41,133Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_txt_hello [DEBUG] 2020-10-13 08:28:41,133Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2020-10-13 08:28:41,133Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpJsF0Lj-rtc-test [DEBUG] 2020-10-13 08:28:41,511Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpJsF0Lj-rtc-test/tmp71PvkI-TestQuickTxt-tool_contract.json [INFO] 2020-10-13 08:28:41,512Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2020-10-13 08:28:41,514Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmpJsF0Lj-rtc-test/tmpTDf1YNresolved_tool_contract.json [INFO] 2020-10-13 08:28:41,514Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_quick_hello_world run-rtc /tmp/tmpJsF0Lj-rtc-test/tmpTDf1YNresolved_tool_contract.json' [INFO] 2020-10-13 08:28:41,893Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_txt_hello [DEBUG] 2020-10-13 08:28:41,893Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2020-10-13 08:28:41,894Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_txt_hello [DEBUG] 2020-10-13 08:28:41,894Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmpJsF0Lj-rtc-test/file.txt', '/tmp/tmpJsF0Lj-rtc-test/file-1.txt'] ok test_run_e2e (tests.test_e2e_example_apps.TestRunDevApp) ... [DEBUG] 2020-10-13 08:28:41,897Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_app --emit-tool-contract [DEBUG] 2020-10-13 08:28:41,897Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.fasta'] [DEBUG] 2020-10-13 08:28:41,897Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmp5KHbmI-rtc-test [DEBUG] 2020-10-13 08:28:42,728Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmp5KHbmI-rtc-test/tmpLnA3cE-TestRunDevApp-tool_contract.json [INFO] 2020-10-13 08:28:42,729Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2020-10-13 08:28:42,732Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmp5KHbmI-rtc-test/tmphGztWeresolved_tool_contract.json [INFO] 2020-10-13 08:28:42,732Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_app --resolved-tool-contract /tmp/tmp5KHbmI-rtc-test/tmphGztWeresolved_tool_contract.json' [INFO] 2020-10-13 08:28:43,583Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_app --emit-tool-contract [DEBUG] 2020-10-13 08:28:43,584Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2020-10-13 08:28:43,584Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_app [DEBUG] 2020-10-13 08:28:43,584Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmp5KHbmI-rtc-test/filter.fasta'] ok test_run_e2e (tests.test_e2e_example_apps.TestTxtDevApp) ... [DEBUG] 2020-10-13 08:28:43,588Z [pbcommand.testkit.core test_run_e2e 94] Driver python -m pbcommand.cli.examples.dev_txt_app --emit-tool-contract [DEBUG] 2020-10-13 08:28:43,588Z [pbcommand.testkit.core test_run_e2e 95] input files ['/build/python-pbcommand-1.1.1/tests/data/example.txt'] [DEBUG] 2020-10-13 08:28:43,588Z [pbcommand.testkit.core test_run_e2e 96] running in /tmp/tmpaFcb8d-rtc-test [DEBUG] 2020-10-13 08:28:43,941Z [pbcommand.testkit.core test_run_e2e 104] Loading tool-contract from /tmp/tmpaFcb8d-rtc-test/tmpiSQs6h-TestTxtDevApp-tool_contract.json [INFO] 2020-10-13 08:28:43,943Z [pbcommand.testkit.core test_run_e2e 107] Resolving tool contract to RTC [INFO] 2020-10-13 08:28:43,945Z [pbcommand.testkit.core test_run_e2e 130] running resolved contract /tmp/tmpaFcb8d-rtc-test/tmp0DGzU8resolved_tool_contract.json [INFO] 2020-10-13 08:28:43,945Z [pbcommand.testkit.core test_run_e2e 133] Running exe 'python -m pbcommand.cli.examples.dev_txt_app --resolved-tool-contract /tmp/tmpaFcb8d-rtc-test/tmp0DGzU8resolved_tool_contract.json' [INFO] 2020-10-13 08:28:44,368Z [pbcommand.testkit.core test_run_e2e 142] Successfully completed running e2e for python -m pbcommand.cli.examples.dev_txt_app --emit-tool-contract [DEBUG] 2020-10-13 08:28:44,369Z [pbcommand.testkit.core _test_outputs_exists 64] validating output file existence from [DEBUG] 2020-10-13 08:28:44,369Z [pbcommand.testkit.core _test_outputs_exists 65] Resolved Output files from pbcommand.tasks.dev_txt_app [DEBUG] 2020-10-13 08:28:44,369Z [pbcommand.testkit.core _test_outputs_exists 66] ['/tmp/tmpaFcb8d-rtc-test/output.txt'] ok test_simple_run_cmd (tests.test_engine_runner.RunnerSmokeTest) ... [DEBUG] 2020-10-13 08:28:44,391Z [pbcommand.engine.runner run_cmd 45] calling cmd 'cat /tmp/tmpWAMeiHsimple-cmd/tmp6lHZus.txt > /tmp/tmpWAMeiHsimple-cmd/tmp7ErLa8*.txt' on codethink-sled12-arm64 [DEBUG] 2020-10-13 08:28:44,703Z [pbcommand.engine.runner run_cmd 76] returncode is 0 in 0.33 sec. ok test_01 (tests.test_load_resolved_tool_contract.TestLoadResolvedContract) ... [INFO] 2020-10-13 08:28:44,707Z [tests.test_load_resolved_tool_contract test_01 33] ok test_01 (tests.test_load_resolved_tool_contract.TestResolveContract) ... [INFO] 2020-10-13 08:28:44,710Z [tests.test_load_resolved_tool_contract test_01 50] [DEBUG] 2020-10-13 08:28:44,710Z [tests.test_load_resolved_tool_contract test_01 55] Resources [, , ] ok test_datastore_file (tests.test_models_common.TestDataStore) ... [INFO] 2020-10-13 08:28:44,714Z [tests.test_models_common test_datastore_file 33] DataStoreFile: ok test_datastore_paths (tests.test_models_common.TestDataStore) ... ok test_file_types (tests.test_models_common.TestLoadFileTypes) ... ok test_is_valid (tests.test_models_common.TestLoadFileTypes) ... ok test_bad_invalid_choice (tests.test_models_common_pacbio_options.TestPacBioBasicChoiceTest) ... ok test_sanity_choice_option (tests.test_models_common_pacbio_options.TestPacBioBasicChoiceTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioBasicChoiceTest) ... [DEBUG] 2020-10-13 08:28:44,725Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioBasicOptionTest) ... [DEBUG] 2020-10-13 08:28:44,727Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_value_float (tests.test_models_common_pacbio_options.TestPacBioBooleanOptionTest) ... ok test_bad_value_int (tests.test_models_common_pacbio_options.TestPacBioBooleanOptionTest) ... ok test_bad_value_string (tests.test_models_common_pacbio_options.TestPacBioBooleanOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioBooleanOptionTest) ... [DEBUG] 2020-10-13 08:28:44,730Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_invalid_choice (tests.test_models_common_pacbio_options.TestPacBioChoiceStringOptionTest) ... ok test_sanity_choice_option (tests.test_models_common_pacbio_options.TestPacBioChoiceStringOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioChoiceStringOptionTest) ... [DEBUG] 2020-10-13 08:28:44,732Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_choices (tests.test_models_common_pacbio_options.TestPacBioFloatChoiceOptionTest) ... ok test_bad_invalid_choice (tests.test_models_common_pacbio_options.TestPacBioFloatChoiceOptionTest) ... ok test_coerce_float_choices (tests.test_models_common_pacbio_options.TestPacBioFloatChoiceOptionTest) ... ok test_sanity_choice_option (tests.test_models_common_pacbio_options.TestPacBioFloatChoiceOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioFloatChoiceOptionTest) ... [DEBUG] 2020-10-13 08:28:44,736Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_value_boolean (tests.test_models_common_pacbio_options.TestPacBioFloatOptionTest) ... ok test_bad_value_float_tuple (tests.test_models_common_pacbio_options.TestPacBioFloatOptionTest) ... ok test_bad_value_string (tests.test_models_common_pacbio_options.TestPacBioFloatOptionTest) ... ok test_coerced_value_int (tests.test_models_common_pacbio_options.TestPacBioFloatOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioFloatOptionTest) ... [DEBUG] 2020-10-13 08:28:44,739Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_invalid_choice (tests.test_models_common_pacbio_options.TestPacBioIntChoiceOptionTest) ... ok test_sanity_choice_option (tests.test_models_common_pacbio_options.TestPacBioIntChoiceOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioIntChoiceOptionTest) ... [DEBUG] 2020-10-13 08:28:44,741Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_value_boolean (tests.test_models_common_pacbio_options.TestPacBioIntOptionTest) ... ok test_bad_value_float (tests.test_models_common_pacbio_options.TestPacBioIntOptionTest) ... ok test_bad_value_string (tests.test_models_common_pacbio_options.TestPacBioIntOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioIntOptionTest) ... [DEBUG] 2020-10-13 08:28:44,744Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok Test that unicode values are not Supported ... ok test_bad_value_float (tests.test_models_common_pacbio_options.TestPacBioStringOptionTest) ... ok test_bad_value_int (tests.test_models_common_pacbio_options.TestPacBioStringOptionTest) ... ok test_sanity_option (tests.test_models_common_pacbio_options.TestPacBioStringOptionTest) ... [DEBUG] 2020-10-13 08:28:44,746Z [tests.test_models_common_pacbio_options test_sanity_option 37] Created option ok test_bad_01 (tests.test_models_report.TestMalformedReport) ... ok Can't add elements with the same id. ... a plot with id 'a' has already been added to . [ERROR] 2020-10-13 08:28:44,752Z [pbcommand.models.report is_unique 115] a plot with id 'a' has already been added to . ok test_empty_id (tests.test_models_report.TestReportModel) ... id '' for Report must contain only lower-case alphanumeric or underscore characters [ERROR] 2020-10-13 08:28:44,752Z [pbcommand.models.report __init__ 100] id '' for Report must contain only lower-case alphanumeric or underscore characters ok test_from_simple_dict (tests.test_models_report.TestReportModel) ... ok test_get_attribute_by_id (tests.test_models_report.TestReportModel) ... ok test_get_attribute_by_id_with_bad_id (tests.test_models_report.TestReportModel) ... ok test_get_column_by_id (tests.test_models_report.TestReportModel) ... ok test_get_column_by_id_with_bad_id (tests.test_models_report.TestReportModel) ... ok test_get_plot_by_id (tests.test_models_report.TestReportModel) ... ok test_get_plot_by_id_with_bad_id (tests.test_models_report.TestReportModel) ... ok test_get_plotgroup_by_id (tests.test_models_report.TestReportModel) ... ok test_get_plotgroup_by_id_with_bad_id (tests.test_models_report.TestReportModel) ... ok test_get_table_by_id (tests.test_models_report.TestReportModel) ... ok test_get_table_by_id_with_bad_id (tests.test_models_report.TestReportModel) ... ok Ids must be alphanumberic with underscores ... id 'a b' for Attribute must contain only lower-case alphanumeric or underscore characters [ERROR] 2020-10-13 08:28:44,759Z [pbcommand.models.report __init__ 100] id 'a b' for Attribute must contain only lower-case alphanumeric or underscore characters ok test_merge (tests.test_models_report.TestReportModel) ... ok test_merge_tables (tests.test_models_report.TestReportModel) ... [INFO] 2020-10-13 08:28:44,761Z [tests.test_models_report _to_report 22] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/laa_report1.json [INFO] 2020-10-13 08:28:44,762Z [tests.test_models_report _to_report 22] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/laa_report2.json ok Can't create a report with an empty namespace. ... id '' for Report must contain only lower-case alphanumeric or underscore characters [ERROR] 2020-10-13 08:28:44,764Z [pbcommand.models.report __init__ 100] id '' for Report must contain only lower-case alphanumeric or underscore characters ok Can't create a report without a namespace. ... ok The id of report sub elements is prepended with the id of the parent ... [DEBUG] 2020-10-13 08:28:44,770Z [tests.test_models_report test_to_dict 95] {'_comment': 'Generated with pbcommand version 1.1.1 at 2020-10-12T20:28:44.765323', 'attributes': [{'id': 'redfang.a', 'name': None, 'value': 'b'}, {'id': 'redfang.a2', 'name': None, 'value': 'b2'}], 'dataset_uuids': [], 'id': 'redfang', 'plotGroups': [{'id': 'redfang.pgid', 'legend': None, 'plots': [{'caption': None, 'id': 'redfang.pgid.pid', 'image': 'anImg', 'plotType': 'image', 'title': None}, {'caption': None, 'id': 'redfang.pgid.pid2', 'image': 'anImg2', 'plotType': 'image', 'title': None}], 'thumbnail': None, 'title': None}], 'tables': [{'columns': [{'header': None, 'id': 'redfang.tabid.c1', 'values': []}], 'id': 'redfang.tabid', 'title': None}], 'title': 'Report redfang', 'uuid': 'be7e2d67-db42-4340-9798-e741153d6f29', 'version': '1.0.1'} ok Multiple complex elements. ... [DEBUG] 2020-10-13 08:28:44,772Z [tests.test_models_report test_to_dict_multi 151] {'tables': [{'id': 'redfang.tabid', 'columns': [{'header': None, 'values': [], 'id': 'redfang.tabid.c1'}], 'title': None}, {'id': 'redfang.tabid2', 'columns': [{'header': None, 'values': [], 'id': 'redfang.tabid2.c2'}], 'title': None}], 'uuid': '252bc0e4-9115-4dd6-8968-a53b28e13c74', 'title': 'Report redfang', '_comment': 'Generated with pbcommand version 1.1.1 at 2020-10-12T20:28:44.771752', 'dataset_uuids': [], 'version': '1.0.1', 'attributes': [{'name': None, 'value': 'b', 'id': 'redfang.a'}, {'name': None, 'value': 'b2', 'id': 'redfang.a2'}], 'id': 'redfang', 'plotGroups': [{'id': 'redfang.pgid', 'thumbnail': None, 'plots': [{'id': 'redfang.pgid.pid', 'caption': None, 'image': 'anImg', 'plotType': 'image', 'title': None}, {'id': 'redfang.pgid.pid2', 'caption': None, 'image': 'anImg2', 'plotType': 'image', 'title': None}], 'legend': None, 'title': None}, {'id': 'redfang.pgid2', 'thumbnail': None, 'plots': [{'id': 'redfang.pgid2.pid2', 'caption': None, 'image': 'anImg2', 'plotType': 'image', 'title': None}, {'id': 'redfang.pgid2.pid22', 'caption': None, 'image': 'anImg22', 'plotType': 'image', 'title': None}], 'legend': None, 'title': None}]} [INFO] 2020-10-13 08:28:44,772Z [tests.test_models_report test_to_dict_multi 177] ok test_uppercase_id (tests.test_models_report.TestReportModel) ... id 'A' for Report must contain only lower-case alphanumeric or underscore characters [ERROR] 2020-10-13 08:28:44,772Z [pbcommand.models.report __init__ 100] id 'A' for Report must contain only lower-case alphanumeric or underscore characters ok test_version_and_changelist (tests.test_models_report.TestReportModel) ... [INFO] 2020-10-13 08:28:44,774Z [tests.test_models_report test_version_and_changelist 113] {'_comment': 'Generated with pbcommand version 1.1.1 at 2020-10-12T20:28:44.773491', 'attributes': [], 'dataset_uuids': [], 'id': 'example', 'plotGroups': [], 'tables': [], 'title': 'Report example', 'uuid': 'f8e59870-8431-4c8a-86a0-a46d43114174', 'version': '1.0.1'} ok test_sanity (tests.test_models_report.TestReportSchemaVersion100) ... [INFO] 2020-10-13 08:28:44,776Z [tests.test_models_report _to_report 22] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/example_version_1_0_0.json ok test_apply_view (tests.test_models_report.TestReportSpec) ... [INFO] 2020-10-13 08:28:44,781Z [tests.test_models_report _to_report 22] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/test_report2.json ok test_format_metric (tests.test_models_report.TestReportSpec) ... ok test_report_validation (tests.test_models_report.TestReportSpec) ... [INFO] 2020-10-13 08:28:44,786Z [tests.test_models_report _to_report 22] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/test_report.json ok test_sanity (tests.test_models_report.TestRepotSchemaVersion100WithPlots) ... Report test_report failed validation against spec: Attribute attribute1 has value of type float (expected ) Attribute attribute5 not found in spec [INFO] 2020-10-13 08:28:44,790Z [tests.test_models_report _to_report 22] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/example_with_plot.json ok Test exception of handling Attribute with int ids ... ok Can't create an attribute without an id. ... ok test_eq (tests.test_models_report_attribute.TestAttribute) ... ok test_repr (tests.test_models_report_attribute.TestAttribute) ... [INFO] 2020-10-13 08:28:44,794Z [tests.test_models_report_attribute test_repr 45] ok Test attribute to_dict function ... ok Test: Can't create a Column without an id. ... ok test_repr (tests.test_models_report_column.TestColumn) ... ok Initial with thumbnail ... [INFO] 2020-10-13 08:28:44,800Z [tests.test_models_report_plot test_init_with_thumbnail 42] {'caption': 'Awesome image', 'id': 'plot_1', 'image': 'my_image.png', 'plotType': 'image', 'title': None} ok Can't create an plot without an id. ... ok Can't create an plot without an image. ... ok test_plotly_plot (tests.test_models_report_plot.TestPlot) ... ok Test plot to dictionary method ... [INFO] 2020-10-13 08:28:44,802Z [tests.test_models_report_plot test_to_dict 31] { 'caption': 'foo is the caption', 'id': '123', 'image': 'foo', 'plotType': 'image', 'title': None} [INFO] 2020-10-13 08:28:44,802Z [tests.test_models_report_plot test_to_dict 32] ok Validate type when adding Plots. ... ok Test constructor with kwargs ... ok Can't add plots with duplicate ids. ... a plot with id 'id' has already been added to . [ERROR] 2020-10-13 08:28:44,806Z [pbcommand.models.report is_unique 115] a plot with id 'id' has already been added to . ok Can't create an plotGroup without an id. ... ok Test plotGroup to_dict function. ... [DEBUG] 2020-10-13 08:28:44,808Z [tests.test_models_report_plotgroup test_to_dict 42] {'id': '123', 'legend': 'foo legend', 'plots': [{'caption': 'a caption', 'id': '123.id', 'image': 'i1', 'plotType': 'image', 'title': None}], 'thumbnail': 'foo thumbnail', 'title': 'foo title'} [INFO] 2020-10-13 08:28:44,808Z [tests.test_models_report_plotgroup test_to_dict 49] ok Basic check for column values ... ok Test Columns ... ok Smoke test for conversion to str ... [INFO] 2020-10-13 08:28:44,812Z [tests.test_models_report_table test_str 61] Table id:my_table_with_values --------------------- One Two Three --------------------- 0 a file1 1 b file2 2 c file3 ok test_to_csv (tests.test_models_report_table.TestBasicTable) ... ok Conversion to dictionary ... [INFO] 2020-10-13 08:28:44,813Z [tests.test_models_report_table test_to_dict 76] {'id': 'my_table_with_values', 'columns': [{'header': 'One', 'values': [0, 1, 2], 'id': 'my_table_with_values.one'}, {'header': 'Two', 'values': ['a', 'b', 'c'], 'id': 'my_table_with_values.two'}, {'header': 'Three', 'values': ['file1', 'file2', 'file3'], 'id': 'my_table_with_values.three'}], 'title': None} ok Basic check for column values ... ok Test Columns ... ok Smoke test for conversion to str ... [INFO] 2020-10-13 08:28:44,816Z [tests.test_models_report_table test_str 23] Table id:my_table --------------------- One Two Three --------------------- ok Conversion to dictionary ... [INFO] 2020-10-13 08:28:44,817Z [tests.test_models_report_table test_to_dict 38] {'id': 'my_table', 'columns': [{'header': 'One', 'values': [], 'id': 'my_table.one'}, {'header': 'Two', 'values': [], 'id': 'my_table.two'}, {'header': 'Three', 'values': [], 'id': 'my_table.three'}], 'title': None} ok Cannot add column with duplicate id. ... a plot with id '2' has already been added to . [ERROR] 2020-10-13 08:28:44,818Z [pbcommand.models.report is_unique 115] a plot with id '2' has already been added to . ok Added data values by column identifier. ... ok Append data to columns by index. ... ok Can't create an Table without an id. ... ok test_catch_output_file_extension (tests.test_parsers.TestParsers) ... ok test_input_output_files (tests.test_parsers.TestParsers) ... ok test_misc_parser_types (tests.test_parsers.TestParsers) ... ok test_write_chunks (tests.test_pb_io_common.TestWriteChunk) ... [DEBUG] 2020-10-13 08:28:44,835Z [tests.test_pb_io_common test_write_chunks 26] [, , , , ] [DEBUG] 2020-10-13 08:28:44,836Z [pbcommand.pb_io.common write_pipeline_chunks 28] Write 5 chunks to /tmp/tmpvW2sRgpipeline-chunks/tmpw9icCx_chunk.json ok [INFO] 2020-10-13 08:28:44,839Z [tests.test_pb_io_conditions _loader 18] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-conditions/reseq-conditions-01.json test_condition_a (tests.test_pb_io_conditions.TestSerializationOfResequencingConditions) ... [INFO] 2020-10-13 08:28:44,840Z [tests.test_pb_io_conditions test_condition_a 35] ReseqConditions(conditions=[ReseqCondition(cond_id='cond_alpha', subreadset='/path/to/subreadset-01.xml', alignmentset='/path/to/alignmentset-A.xml', referenceset='/path/to/reference.xml'), ReseqCondition(cond_id='cond_alpha', subreadset='/path/to/subreadset-02.xml', alignmentset='/path/to/alignmentset-B.xml', referenceset='/path/to/reference.xml'), ReseqCondition(cond_id='cond_beta', subreadset='/path/to/subreadset-03.xml', alignmentset='/path/to/alignmentset-C.xml', referenceset='/path/to/reference.xml')]) ok test_condition_n (tests.test_pb_io_conditions.TestSerializationOfResequencingConditions) ... ok test_condition_paths_abs (tests.test_pb_io_conditions.TestSerializationOfResequencingConditions) ... ok [INFO] 2020-10-13 08:28:44,842Z [tests.test_pb_io_conditions _loader 18] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-conditions/reseq-conditions-02.json test_condition_a (tests.test_pb_io_conditions.TestSerializationOfResequencingConditionsWithRelativePath) ... [INFO] 2020-10-13 08:28:44,843Z [tests.test_pb_io_conditions test_condition_a 35] ReseqConditions(conditions=[ReseqCondition(cond_id='cond_alpha', subreadset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/subreadset-01.xml', alignmentset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/alignmentset-A.xml', referenceset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/reference.xml'), ReseqCondition(cond_id='cond_alpha', subreadset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/subreadset-02.xml', alignmentset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/alignmentset-B.xml', referenceset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/reference.xml'), ReseqCondition(cond_id='cond_beta', subreadset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/subreadset-03.xml', alignmentset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/alignmentset-C.xml', referenceset='/build/python-pbcommand-1.1.1/tests/data/example-conditions/reference.xml')]) ok test_condition_n (tests.test_pb_io_conditions.TestSerializationOfResequencingConditionsWithRelativePath) ... ok test_condition_paths_abs (tests.test_pb_io_conditions.TestSerializationOfResequencingConditionsWithRelativePath) ... ok [INFO] 2020-10-13 08:28:44,846Z [tests.test_pb_io_report _to_report 19] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/filter_reports_adapters.json test_attributes (tests.test_pb_io_report.TestSerializationAdapterReport) ... ok test_id (tests.test_pb_io_report.TestSerializationAdapterReport) ... ok test_plotgroups (tests.test_pb_io_report.TestSerializationAdapterReport) ... ok test_plots (tests.test_pb_io_report.TestSerializationAdapterReport) ... ok [INFO] 2020-10-13 08:28:44,849Z [tests.test_pb_io_report _to_report 19] loading json report from /build/python-pbcommand-1.1.1/tests/data/example-reports/overview.json test_attributes (tests.test_pb_io_report.TestSerializationOverviewReport) ... ok test_id (tests.test_pb_io_report.TestSerializationOverviewReport) ... ok test_title (tests.test_pb_io_report.TestSerializationOverviewReport) ... ok test_uuid (tests.test_pb_io_report.TestSerializationOverviewReport) ... ok test_full_schema (tests.test_pb_io_tool_contract.TestLoadPipelinePresets) ... ok test_shorthand_options (tests.test_pb_io_tool_contract.TestLoadPipelinePresets) ... ok test_01 (tests.test_pb_io_tool_contract.TestLoadToolContract) ... ok test_tc_no_inputs (tests.test_pb_io_tool_contract.TestMalformedToolContract) ... ok test_01 (tests.test_pb_io_tool_contract.TestWriteResolvedToolContractAvro) ... [DEBUG] 2020-10-13 08:28:44,863Z [pbcommand.pb_io.tool_contract_io _write_records_to_avro 388] Write avro file to /tmp/tmpoWomXFrtc-app/tmpIeG7UW-resolved-tool-contract.avro ok test_01 (tests.test_pb_io_tool_contract_v1.TestLoadToolContract) ... ok test_tc_no_inputs (tests.test_pb_io_tool_contract_v1.TestMalformedToolContract) ... ok test_sanity (tests.test_resolver.TestGatherResolver) ... ok test_failure_modes (tests.test_resolver.TestResolver) ... ok test_sanity (tests.test_resolver.TestResolver) ... ok test_sanity (tests.test_resolver.TestScatterResolver) ... ok test_validate_pipeline_datastore_view_rules (tests.test_schema_validation.ValidateDataStoreViewRules) ... [INFO] 2020-10-13 08:28:44,881Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/pipeline-datastore-view-rules/rules_01.json' [INFO] 2020-10-13 08:28:44,881Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/pipeline-datastore-view-rules/rules_01.json ok test_validate_pipeline_presets (tests.test_schema_validation.ValidatePipelinePreset) ... [INFO] 2020-10-13 08:28:44,884Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/pipeline-presets/example-pipeline-presets.json' [INFO] 2020-10-13 08:28:44,884Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/pipeline-presets/example-pipeline-presets.json [INFO] 2020-10-13 08:28:44,885Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/pipeline-presets/example-pipeline-presets-typed.json' [INFO] 2020-10-13 08:28:44,885Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/pipeline-presets/example-pipeline-presets-typed.json ok test_validate_report_spec (tests.test_schema_validation.ValidateReportSpec) ... ok test_validate_resolved_tool_contracts (tests.test_schema_validation.ValidateResolvedToolContracts) ... [INFO] 2020-10-13 08:28:44,890Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/resolved_tool_contract_dev_app.json' [INFO] 2020-10-13 08:28:44,890Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/resolved_tool_contract_dev_app.json [INFO] 2020-10-13 08:28:44,891Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/resolved_contract_01.json' [INFO] 2020-10-13 08:28:44,891Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/resolved_contract_01.json [INFO] 2020-10-13 08:28:44,891Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/dev_mixed_app_resolved_tool_contract.json' [INFO] 2020-10-13 08:28:44,892Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/dev_mixed_app_resolved_tool_contract.json [INFO] 2020-10-13 08:28:44,893Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/dev_example_resolved_tool_contract.json' [INFO] 2020-10-13 08:28:44,893Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/resolved-tool-contracts/dev_example_resolved_tool_contract.json ok test_validate_tool_contracts (tests.test_schema_validation.ValidateToolContracts) ... [INFO] 2020-10-13 08:28:44,895Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_txt_hello_tool_contract.json' [INFO] 2020-10-13 08:28:44,896Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_txt_hello_tool_contract.json [INFO] 2020-10-13 08:28:44,897Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_txt_custom_outs_tool_contract.json' [INFO] 2020-10-13 08:28:44,897Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_txt_custom_outs_tool_contract.json [INFO] 2020-10-13 08:28:44,898Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_qhello_world_tool_contract.json' [INFO] 2020-10-13 08:28:44,898Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_qhello_world_tool_contract.json [INFO] 2020-10-13 08:28:44,899Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_fastq2fasta_tool_contract.json' [INFO] 2020-10-13 08:28:44,899Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_fastq2fasta_tool_contract.json [INFO] 2020-10-13 08:28:44,900Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_app_tool_contract.json' [INFO] 2020-10-13 08:28:44,901Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/pbcommand.tasks.dev_app_tool_contract.json [INFO] 2020-10-13 08:28:44,901Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_scatter_fasta_app_tool_contract.json' [INFO] 2020-10-13 08:28:44,902Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_scatter_fasta_app_tool_contract.json [INFO] 2020-10-13 08:28:44,903Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_mixed_app_tool_contract.json' [INFO] 2020-10-13 08:28:44,903Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_mixed_app_tool_contract.json [INFO] 2020-10-13 08:28:44,904Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_gather_fasta_app_tool_contract.json' [INFO] 2020-10-13 08:28:44,905Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_gather_fasta_app_tool_contract.json [INFO] 2020-10-13 08:28:44,906Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_example_tool_contract.json' [INFO] 2020-10-13 08:28:44,906Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_example_tool_contract.json [INFO] 2020-10-13 08:28:44,907Z [tests.test_schema_validation test_is_validate 40] Attempting to validate '/build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_example_dev_txt_app_tool_contract.json' [INFO] 2020-10-13 08:28:44,907Z [tests.test_schema_validation test_is_validate 42] is-valid? True /build/python-pbcommand-1.1.1/tests/data/tool-contracts/dev_example_dev_txt_app_tool_contract.json ok Test that the pb_requirements decorator monkey-patches test methods ... ok test_empty_list (tests.test_utils.TestCompose) ... ok test_no_args_list (tests.test_utils.TestCompose) ... ok test_partial (tests.test_utils.TestCompose) ... ok test_simple (tests.test_utils.TestCompose) ... ok test_get_parsed_args_log_level (tests.test_utils.TestLogging) ... ok test_basic (tests.test_utils.TestSingleton) ... ok test_get_dataset_metadata (tests.test_utils.TestUtils) ... SKIP: pbtestdata not available, skipping Test: Return abspath if file found ... ok Test: Raise IOError if file not found ... ls: cannot access 'this_file_does_not_exist': No such file or directory ok Test: Return abspath if file found and not empty ... ok Test: Raise IOError if file found but empty ... ls: cannot access '/tmp/tmpAfQdnKempty': No such file or directory ok Test: Raise IOError if output does not exist ... ls: cannot access '/whatev': No such file or directory ok test_validate_report (tests.test_validators.TestValidators) ... ok test_validate_report_fails (tests.test_validators.TestValidators) ... ok Test: Raise ValueError if report has path sep ... ok ---------------------------------------------------------------------- Ran 157 tests in 8.156s OK (SKIP=1) make[1]: Leaving directory '/build/python-pbcommand-1.1.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary LC_ALL=C.UTF-8 dh binary --with python2 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /build/python-pbcommand-1.1.1/debian/python-pbcommand running install running build running build_py running install_lib creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7 creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_app.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_gather_fasta_app.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_mixed_app.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_quick_hello_world.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_scatter_fasta_app.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_simple_app.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/dev_txt_app.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/template_simple.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/examples/template_subparser_simple.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/core.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/quick.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/cli/utils.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/engine copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/engine/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/engine copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/engine/runner.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/engine creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models/common.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models/conditions.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models/parser.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models/report.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/models/tool_contract.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io/common.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io/conditions.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io/report.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/pb_io/tool_contract_io.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/datastore.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/datastore_view_rules.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/pbreport.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/pipeline_presets.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/pipeline_presets_simple.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/pipeline_template_view_rules.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/report_spec.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/resolved_tool_contract.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/tool_contract.avsc -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/schemas/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services/_service_access_layer.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services/cli.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services/models.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/services/utils.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit/base_utils.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit/core.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/testkit/nunit.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/common_options.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/interactive_resolver.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/resolver.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/utils.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/pbcommand/validators.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand creating /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/__init__.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/base_utils.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_common_cmdline_core.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_e2e_example_apps.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_engine_runner.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_load_resolved_tool_contract.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_common.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_common_pacbio_options.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_report.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_report_attribute.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_report_column.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_report_plot.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_report_plotgroup.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_models_report_table.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_parsers.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_pb_io_common.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_pb_io_conditions.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_pb_io_report.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_pb_io_tool_contract.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_pb_io_tool_contract_v1.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_resolver.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_schema_validation.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_testkit.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_utils.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests copying /build/python-pbcommand-1.1.1/.pybuild/cpython2_2.7_pbcommand/build/tests/test_validators.py -> /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_app.py to dev_app.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_gather_fasta_app.py to dev_gather_fasta_app.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_mixed_app.py to dev_mixed_app.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_quick_hello_world.py to dev_quick_hello_world.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_scatter_fasta_app.py to dev_scatter_fasta_app.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_simple_app.py to dev_simple_app.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/dev_txt_app.py to dev_txt_app.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/template_simple.py to template_simple.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/examples/template_subparser_simple.py to template_subparser_simple.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/core.py to core.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/quick.py to quick.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/cli/utils.py to utils.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/engine/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/engine/runner.py to runner.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models/common.py to common.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models/conditions.py to conditions.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models/parser.py to parser.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models/report.py to report.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/models/tool_contract.py to tool_contract.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io/common.py to common.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io/conditions.py to conditions.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io/report.py to report.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/pb_io/tool_contract_io.py to tool_contract_io.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/schemas/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services/_service_access_layer.py to _service_access_layer.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services/cli.py to cli.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services/models.py to models.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/services/utils.py to utils.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit/base_utils.py to base_utils.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit/core.py to core.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/testkit/nunit.py to nunit.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/common_options.py to common_options.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/interactive_resolver.py to interactive_resolver.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/resolver.py to resolver.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/utils.py to utils.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand/validators.py to validators.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/__init__.py to __init__.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/base_utils.py to base_utils.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_common_cmdline_core.py to test_common_cmdline_core.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_e2e_example_apps.py to test_e2e_example_apps.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_engine_runner.py to test_engine_runner.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_load_resolved_tool_contract.py to test_load_resolved_tool_contract.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_common.py to test_models_common.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_common_pacbio_options.py to test_models_common_pacbio_options.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_report.py to test_models_report.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_report_attribute.py to test_models_report_attribute.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_report_column.py to test_models_report_column.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_report_plot.py to test_models_report_plot.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_report_plotgroup.py to test_models_report_plotgroup.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_models_report_table.py to test_models_report_table.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_parsers.py to test_parsers.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_pb_io_common.py to test_pb_io_common.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_pb_io_conditions.py to test_pb_io_conditions.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_pb_io_report.py to test_pb_io_report.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_pb_io_tool_contract.py to test_pb_io_tool_contract.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_pb_io_tool_contract_v1.py to test_pb_io_tool_contract_v1.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_resolver.py to test_resolver.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_schema_validation.py to test_schema_validation.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_testkit.py to test_testkit.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_utils.py to test_utils.pyc byte-compiling /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/tests/test_validators.py to test_validators.pyc running install_egg_info running egg_info creating pbcommand.egg-info writing requirements to pbcommand.egg-info/requires.txt writing pbcommand.egg-info/PKG-INFO writing top-level names to pbcommand.egg-info/top_level.txt writing dependency_links to pbcommand.egg-info/dependency_links.txt writing manifest file 'pbcommand.egg-info/SOURCES.txt' reading manifest file 'pbcommand.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'examples' warning: no files found matching '*.py' under directory 'examples' writing manifest file 'pbcommand.egg-info/SOURCES.txt' Copying pbcommand.egg-info to /build/python-pbcommand-1.1.1/debian/python-pbcommand/usr/lib/python2.7/dist-packages/pbcommand-1.1.1.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-pbcommand: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pbcommand: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-pbcommand' in '../python-pbcommand_1.1.1-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-pbcommand_1.1.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/14917 and its subdirectories I: Current time: Mon Oct 12 20:28:58 -12 2020 I: pbuilder-time-stamp: 1602577738