I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 8 18:25:40 -12 2021 I: pbuilder-time-stamp: 1631168740 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-csb_1.2.5+dfsg-3.dsc] I: copying [./python-csb_1.2.5+dfsg.orig.tar.gz] I: copying [./python-csb_1.2.5+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Apr 15 23:36:47 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-csb_1.2.5+dfsg-3.dsc dpkg-source: info: extracting python-csb in python-csb-1.2.5+dfsg dpkg-source: info: unpacking python-csb_1.2.5+dfsg.orig.tar.gz dpkg-source: info: unpacking python-csb_1.2.5+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying exclude_online_tests.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying fix_setup.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/31470/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='31470' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.kWciBUsnoe/pbuilderrc_NRZ3 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.kWciBUsnoe/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled13-arm64 4.4.0-186-generic #216-Ubuntu SMP Wed Jul 1 05:35:21 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 7 02:50 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/31470/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, python-all, python3-all, python-epydoc, python-numpy, python-scipy, python-matplotlib, python-setuptools, python3-numpy, python3-scipy, python3-matplotlib, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python-all; however: Package python-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python-epydoc; however: Package python-epydoc is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-scipy; however: Package python-scipy is not installed. pbuilder-satisfydepends-dummy depends on python-matplotlib; however: Package python-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpng16-16{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-backports.functools-lru-cache{a} python-cycler{a} python-dateutil{a} python-decorator{a} python-epydoc{a} python-kiwisolver{a} python-matplotlib{a} python-matplotlib-data{a} python-matplotlib2-data{a} python-minimal{a} python-numpy{a} python-pkg-resources{a} python-pyparsing{a} python-scipy{a} python-setuptools{a} python-six{a} python-subprocess32{a} python-tz{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} python3{a} python3-all{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-pyparsing{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} ttf-bitstream-vera{a} The following packages are RECOMMENDED but will NOT be installed: curl graphviz javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx python-dev python-docutils python-pil python-tk python3-pil python3-tk shared-mime-info wget xdg-user-dirs 0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 75.5 MB of archives. After unpacking 285 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u2 [588 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u2 [1404 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u2 [1641 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u2 [330 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 python3-distutils all 3.7.3-1 [142 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 dh-python all 3.20190308 [99.3 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 fonts-lyx all 2.3.2-1 [199 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libpng16-16 arm64 1.6.36-6 [287 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libfreetype6 arm64 2.9.1-3+deb10u1 [355 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 python-all arm64 2.7.16-1 [1044 B] Get: 69 http://deb.debian.org/debian buster/main arm64 python-backports.functools-lru-cache all 1.5-3 [6704 B] Get: 70 http://deb.debian.org/debian buster/main arm64 python-six all 1.12.0-1 [15.7 kB] Get: 71 http://deb.debian.org/debian buster/main arm64 python-cycler all 0.10.0-1 [7448 B] Get: 72 http://deb.debian.org/debian buster/main arm64 python-dateutil all 2.7.3-3 [76.8 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 python-decorator all 4.3.0-1.1 [14.4 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 python-epydoc all 3.0.1+dfsg-20 [221 kB] Get: 75 http://deb.debian.org/debian buster/main arm64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 76 http://deb.debian.org/debian buster/main arm64 python-kiwisolver arm64 1.0.1-2+b1 [64.0 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 ttf-bitstream-vera all 1.10-8 [352 kB] Get: 78 http://deb.debian.org/debian buster/main arm64 python-matplotlib2-data all 2.2.3-6 [4124 kB] Get: 79 http://deb.debian.org/debian buster/main arm64 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] Get: 80 http://deb.debian.org/debian buster/main arm64 python-tz all 2019.1-1 [33.6 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 python-numpy arm64 1:1.16.2-1 [1975 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 python-subprocess32 arm64 3.5.3-1 [29.6 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 python-matplotlib arm64 2.2.3-6 [5033 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 python-matplotlib-data all 3.0.2-2 [4138 kB] Get: 85 http://deb.debian.org/debian buster/main arm64 python-scipy arm64 1.1.0-7 [9327 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 python-setuptools all 40.8.0-1 [382 kB] Get: 87 http://deb.debian.org/debian buster/main arm64 python3-all arm64 3.7.3-1 [1068 B] Get: 88 http://deb.debian.org/debian buster/main arm64 python3-six all 1.12.0-1 [15.7 kB] Get: 89 http://deb.debian.org/debian buster/main arm64 python3-cycler all 0.10.0-1 [7556 B] Get: 90 http://deb.debian.org/debian buster/main arm64 python3-dateutil all 2.7.3-3 [64.5 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 python3-decorator all 4.3.0-1.1 [14.5 kB] Get: 92 http://deb.debian.org/debian buster/main arm64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 93 http://deb.debian.org/debian buster/main arm64 python3-kiwisolver arm64 1.0.1-2+b1 [62.9 kB] Get: 94 http://deb.debian.org/debian buster/main arm64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get: 95 http://deb.debian.org/debian buster/main arm64 python3-numpy arm64 1:1.16.2-1 [1991 kB] Get: 96 http://deb.debian.org/debian buster/main arm64 python3-matplotlib arm64 3.0.2-2 [5310 kB] Get: 97 http://deb.debian.org/debian buster/main arm64 python3-scipy arm64 1.1.0-7 [9306 kB] Get: 98 http://deb.debian.org/debian buster/main arm64 python3-setuptools all 40.8.0-1 [306 kB] Fetched 75.5 MB in 4s (20.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... 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Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../63-python3-pkg-resources_40.8.0-1_all.deb ... Unpacking python3-pkg-resources (40.8.0-1) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../64-python3-kiwisolver_1.0.1-2+b1_arm64.deb ... Unpacking python3-kiwisolver (1.0.1-2+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../65-python3-pyparsing_2.2.0+dfsg1-2_all.deb ... Unpacking python3-pyparsing (2.2.0+dfsg1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../66-python3-numpy_1%3a1.16.2-1_arm64.deb ... Unpacking python3-numpy (1:1.16.2-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../67-python3-matplotlib_3.0.2-2_arm64.deb ... Unpacking python3-matplotlib (3.0.2-2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../68-python3-scipy_1.1.0-7_arm64.deb ... Unpacking python3-scipy (1.1.0-7) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../69-python3-setuptools_40.8.0-1_all.deb ... Unpacking python3-setuptools (40.8.0-1) ... Setting up libpipeline1:arm64 (1.5.1-2) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up mime-support (3.62) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:arm64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.2-1) ... Setting up libmagic1:arm64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:arm64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:arm64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up libpng16-16:arm64 (1.6.36-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up libgfortran5:arm64 (8.3.0-6) ... Setting up python-matplotlib2-data (2.2.3-6) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up python-matplotlib-data (3.0.2-2) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:arm64 (3.7.3-2+deb10u2) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Setting up libblas3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up libfreetype6:arm64 (2.9.1-3+deb10u1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libpython3-stdlib:arm64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u2) ... Setting up liblapack3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:arm64 (2.7.16-1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.12.0-1) ... Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up python3-decorator (4.3.0-1.1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-cycler (0.10.0-1) ... Setting up python3-dateutil (2.7.3-3) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up python3-setuptools (40.8.0-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python3-all (3.7.3-1) ... Setting up python-all (2.7.16-1) ... Setting up python-decorator (4.3.0-1.1) ... Setting up python-six (1.12.0-1) ... Setting up python-pyparsing (2.2.0+dfsg1-2) ... Setting up python-dateutil (2.7.3-3) ... Setting up python-subprocess32 (3.5.3-1) ... Setting up python3-kiwisolver (1.0.1-2+b1) ... Setting up python-setuptools (40.8.0-1) ... Setting up python-backports.functools-lru-cache (1.5-3) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up python-tz (2019.1-1) ... Setting up python-kiwisolver (1.0.1-2+b1) ... Setting up python-epydoc (3.0.1+dfsg-20) ... Setting up python3-matplotlib (3.0.2-2) ... Setting up python3-scipy (1.1.0-7) ... Setting up python-numpy (1:1.16.2-1) ... Setting up python-cycler (0.10.0-1) ... Setting up python-scipy (1.1.0-7) ... Setting up python-matplotlib (2.2.3-6) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-csb-1.2.5+dfsg' dh_auto_clean I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean Warning: 'classifiers' should be a list, got type 'tuple' running clean removing '/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it rm -rf /build/python-csb-1.2.5+dfsg/debian/buildhome find . -name "*.pyc" -delete rm -rf docs make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python2,python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config I: pybuild base:217: python3.7 setup.py config Warning: 'classifiers' should be a list, got type 'tuple' running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-csb-1.2.5+dfsg' dh_auto_build I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb copying csb/build.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb copying csb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test copying csb/test/app.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test copying csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statmech copying csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statmech copying csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statmech copying csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statmech creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics copying csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics copying csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics copying csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics copying csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics copying csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/numeric copying csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/numeric copying csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/numeric creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/io copying csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/io copying csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/io copying csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/core copying csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/core creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio copying csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps copying csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps copying csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps copying csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps copying csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps copying csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps copying csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps copying csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps copying csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps copying csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps copying csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/io copying csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/samplers creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/utils creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/structure copying csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io copying csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/fragments creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/sequence/alignment copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/sequence/alignment creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/wwpdb creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/procheck copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/procheck creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/hhpred copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/cs copying csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/clans copying csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers copying csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/pdf copying csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/pdf copying csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/pdf creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/utils copying csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/utils creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/structure copying csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/structure creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/sequence copying csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/sequence copying csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/sequence creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/nmr copying csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/nmr creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io copying csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/hmm copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/hmm copying csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/hmm creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/fragments copying csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/fragments copying csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/fragments running egg_info creating csb.egg-info writing requirements to csb.egg-info/requires.txt writing csb.egg-info/PKG-INFO writing top-level names to csb.egg-info/top_level.txt writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing manifest file 'csb.egg-info/SOURCES.txt' reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' writing manifest file 'csb.egg-info/SOURCES.txt' creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data copying csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/nmr/resources I: pybuild base:217: /usr/bin/python3 setup.py build Warning: 'classifiers' should be a list, got type 'tuple' running build running build_py creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb copying csb/build.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb copying csb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test copying csb/test/app.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test copying csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech copying csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech copying csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech copying csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics copying csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics copying csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics copying csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics copying csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics copying csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric copying csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric copying csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io copying csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io copying csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io copying csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/core copying csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/core creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio copying csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps copying csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric copying csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io copying csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio copying csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/samplers copying csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/samplers creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf copying csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/utils copying csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/utils creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/structure copying csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io copying csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/fragments creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/alignment copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/alignment creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/wwpdb creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/whatif copying csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/procheck copying csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/procheck creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/hhpred copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta copying csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/cs copying csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/clans copying csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers copying csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf copying csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf copying csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc copying csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/utils copying csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/utils creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/structure copying csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/structure creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence copying csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence copying csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr copying csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io copying csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm copying csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm copying csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments copying csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments copying csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments running egg_info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.*' under directory 'docs' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' writing manifest file 'csb.egg-info/SOURCES.txt' creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data copying csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data creating /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources mkdir -p /build/python-csb-1.2.5+dfsg/docs/api mkdir -p /build/python-csb-1.2.5+dfsg/debian/buildhome HOME=/build/python-csb-1.2.5+dfsg/debian/buildhome epydoc --html -o /build/python-csb-1.2.5+dfsg/docs/api --name CSB --no-private --introspect-only --exclude csb.test.cases --fail-on-error --fail-on-warning --fail-on-docstring-warning /build/python-csb-1.2.5+dfsg/csb [.........................................................................] make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-csb-1.2.5+dfsg' LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ cd {build_dir}; \ PYTHONPATH={build_dir} PYTHONWARNINGS=d {interpreter} csb/test/app.py --generated-resources /tmp --verbosity 2' I: pybuild base:217: set -e; \ cd /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build; \ PYTHONPATH=/build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build PYTHONWARNINGS=d python2.7 csb/test/app.py --generated-resources /tmp --verbosity 2 /usr/lib/python2.7/dist-packages/scipy/optimize/_minimize.py:37: ImportWarning: Not importing directory '/usr/lib/python2.7/dist-packages/scipy/optimize/lbfgsb': missing __init__.py from .lbfgsb import _minimize_lbfgsb testAnchoredAround (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testBackbone (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testBackboneAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testOverlap (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testRMSDTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testTorsionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testCount (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testMean (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testShrink (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testShrinkOne (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testFomObject (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testComplement (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testFromSource (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testMarkUnconfident (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSources (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testStartingAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testMakeChopped (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeCombined (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeFiltered (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeFragset (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMix (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFromProfile (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testClosest (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testLongest (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testNative (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testPrecision (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testCompute (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testComputeSingle (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testFlatTorsionMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testGetAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testTarget (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testThreshold (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testNeff (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testRank (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testEquals (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testIncludes (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testSurpasses (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testAllLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testConvertScores (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testEmissionSimilarity (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testID (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testScoreUnits (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testSegment (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStartInsertion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder) ... ok testBackground (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testEmission (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testSilent (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testTransitions (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testClansEntryAddingAndSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testClansEntrySortingWithCustomKeyFunction (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testClansInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testDuplicateEntryError (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testGetEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testColorInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testColorSetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testParseClansColorWithCorrectInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testParseClansColorWithWrongInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testToClansColor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testWrittenIsIdenticalToOriginal (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter) ... ok testForbiddenAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testInstatiation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testUnknownParamFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansParser) ... ok testPrematureGetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansParser) ... ok testAddingAndRemovingSeqgroups (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testAddingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testAppendingSeqgroupsFromOtherInstance (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testRemovingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... ok testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... ok testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... ok testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... ok testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... ok testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... ok testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testStrict (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder) ... ok testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadJunk (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadNucleicSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadProteinSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... ok testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... ok testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testMakeAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok testMakeEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok testLargeHitlist (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions) ... ok testFormatStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseLogScales (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseProbability (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseRedundantA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead array = numpy.fromstring(map_data, numpy.float32, count) ok testReadHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReadRawHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReconstructHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testWriteDensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2) ... ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser) ... ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser) ... ok testCommaSplitting (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions) ... ok testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID) ... ok testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFind) ... ok testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseBiomolecule (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseHetMolecules (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testHetMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) ... ok testNonStandardResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) ... ok testCombinedMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testFastMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testMapper (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testRobustMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... ok testSecStructureParsing (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser) ... ok testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConnectedAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testGetAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok testNegative (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testPositive (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testAtomContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testCompare (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testConnect (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testCutoff (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testPosition (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testResidueContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromString (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testGetAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testMatch (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testHasConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testHasElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testNumDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testConnect (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testHasConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testHasElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testLen (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testMaxIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testMinIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testNumDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testNumProtonDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testProtonDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSimpleSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testHMMSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testInsertionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection) ... ok testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testGaps (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIdenticals (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIdentity (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIsEmpty (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQend (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQstart (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQuery (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testSubject (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix) ... ok testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix) ... ok testAppendAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.ChainRegressions) ... ok testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.ChainRegressions) ... ok testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.ChainRegressions) ... ok testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.ChainRegressions) ... skipped 'may fail on slower machines' testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testComputeTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSecStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testTMScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testFirstModel (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testHasStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testInsertionCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testIsModified (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testSequenceNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testFirstChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testFromChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testConversion (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRmsdMirrorImage (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.Regressions) ... ok testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.Regressions) ... ok testCenterOfMass (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDeg (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDistance (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDistanceMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFindPairs (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... /usr/lib/python2.7/dist-packages/scipy/spatial/__init__.py:96: ImportWarning: Not importing directory '/usr/lib/python2.7/dist-packages/scipy/spatial/qhull': missing __init__.py from .qhull import * ok testFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFitWellordered (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testInertiaTensor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRad (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRadiusOfGyration (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRmsdCur (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testScaleAndFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testSecondMoments (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTmScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTmSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTorsionRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWrmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testIndices (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestDeepCopy) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testComparison (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testInOperator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testIsMember (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testMembers (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testMutability (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testNames (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testParseName (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testParseValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testRepr (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testSerialization (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok testValues (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestEnum) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestIterable) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/core.TestOrderedDict) ... ok testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestAutoFlushStream) ... ok testGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testGzipFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testLock (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testLockGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testRecusionLimit (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testSimple (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testAllMarkers (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testDel (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testStartMarker (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testFlush (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testExitCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestShell) ... ok testSTDERR (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestShell) ... ok testSTDOUT (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestShell) ... ok testArrayCompatibility (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTable) ... ok testDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTable) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTable) ... ok testInsert (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTable) ... ok testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTable) ... ok testSQLDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTable) ... ok testScalar (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTable) ... ok testSelect (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTable) ... ok testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTable) ... ok testWhere (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTable) ... ok testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testCallForwarding (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTempFolder) ... ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTempFolder) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/io.TestTempFolder) ... ok testCaching (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... ok testDiagonalTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testUnityMultipleTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.MathRegressions) ... ok testDegree2Radian (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testExp (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testFromPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testLog (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testRadian2Degree (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testRotationMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testLogTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testLogTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testSimpson2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok testFastLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testAutorcorrelation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCircmean (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCircvar (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCumulative (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testEntropy (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testKurtosis (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testSkewness (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/ars.TestARS) ... ok testMaxent (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/maxe.TestMaxent) ... skipped 'slow' testConformerMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testSegmentMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testSampleFromHistogram (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testEnsemble (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testGammaMAP (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testInvGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testInvGammaMAP (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testParameterValidation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testIsVirtual (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testConstrucor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testFindBaseParameter (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testIsVirtual (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testAssignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testParameterChaining (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testProperties (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testAcceptSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testAcceptProposal (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testAcceptanceRate (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testEnergy (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testLastMoveAccepted (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testSample (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testTemperature (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testUpdateStatistics (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testCalcPacc (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok testHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok testPropose (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/samplers/__init__.py:1019: RuntimeWarning: covariance is not symmetric positive-semidefinite. cov=self._mass_matrix) /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc/__init__.py:320: RuntimeWarning: covariance is not symmetric positive-semidefinite. cov=covariance_matrix) ok testHMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testHMCPropagatorMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testNCMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... skipped 'Takes quite a long time to run.' testRWMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testHMCStepRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testMDRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testReplicaExchangeMC (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... skipped 'Takes some time, rendered optional by a unit test.' testThermostattedMDRens (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testThermostattedMDRensMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testProposeWithMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok testProposeWithoutMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok testHMCPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testNonequilibriumStepPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testPlainMDPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testReducedHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testReducedHamiltonianPerturbation (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testStep (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testCalcPaccSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok testProposeSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok testFiveReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/samplers/__init__.py:867: DeprecationWarning: elementwise comparison failed; this will raise an error in the future. for t2 in trajs2]) ok testFiveReplicasOffset (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testFourReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testTwoReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testBoltzmann (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testComposite (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testTsallis (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testNonparametricWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok testWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython2_2-7_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok ---------------------------------------------------------------------- Ran 697 tests in 330.638s OK (skipped=6) I: pybuild base:217: set -e; \ cd /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build; \ PYTHONPATH=/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build PYTHONWARNINGS=d python3.7 csb/test/app.py --generated-resources /tmp --verbosity 2 /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py:162: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/structure/__init__.py:2129: DeprecationWarning: invalid escape sequence \s string = ''.join(re.split('\s+', string)) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/structure/__init__.py:2131: DeprecationWarning: invalid escape sequence \s conf_string = ''.join(re.split('\s+', conf_string)) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence/__init__.py:566: DeprecationWarning: invalid escape sequence \w self._residues += re.sub('([^\w\-\.])+', '', string) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/hhpred.py:210: DeprecationWarning: invalid escape sequence \d m = re.search('(\d+)\D+(\d+)', line).groups() /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/hhpred.py:260: DeprecationWarning: invalid escape sequence \s seq = re.sub('\s+', '', ''.join(lines[1:])) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/hhpred.py:307: DeprecationWarning: invalid escape sequence \- pattern = re.compile('^[A-Z\-]\s[0-9]+\s+') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:1222: DeprecationWarning: invalid escape sequence \d res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py:355: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.full.pickle'> Pickle.dump(ensemble, open(os.path.join(self.generatedData, '1nz9.full.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py:361: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.model1.pickle'> Pickle.dump(model1, open(os.path.join(self.generatedData, '1nz9.model1.pickle'), 'wb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__init__.py:347: DeprecationWarning: invalid escape sequence \s """ /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:31: DeprecationWarning: invalid escape sequence \s input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:32: DeprecationWarning: invalid escape sequence \d residues = re.compile('(\d+)\s*residues\s\|') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:33: DeprecationWarning: invalid escape sequence \s ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' + /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:34: DeprecationWarning: invalid escape sequence \s '%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' + /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:35: DeprecationWarning: invalid escape sequence \s '%\s*gener\s*(\d+\.\d+)%\s*disall') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:36: DeprecationWarning: invalid escape sequence \s labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:37: DeprecationWarning: invalid escape sequence \s labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:38: DeprecationWarning: invalid escape sequence \s bad_contacts = re.compile('Bad\scontacts:\s*(\d+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:39: DeprecationWarning: invalid escape sequence \s g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py:40: DeprecationWarning: invalid escape sequence \s '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/whatif.py:32: DeprecationWarning: invalid escape sequence \s re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/whatif.py:33: DeprecationWarning: invalid escape sequence \s re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/whatif.py:34: DeprecationWarning: invalid escape sequence \s re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/whatif.py:35: DeprecationWarning: invalid escape sequence \s re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/whatif.py:36: DeprecationWarning: invalid escape sequence \S re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:482: DeprecationWarning: invalid escape sequence \w "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] testAnchoredAround (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBackbone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testBackboneAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testOverlap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testRMSDTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testTorsionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestAssignment) ... ok testCount (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testMean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testShrink (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testShrinkOne (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testFomObject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testQEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testQStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testSourceID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment) ... ok testAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testComplement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf5fj2kte' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFromSource (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testMarkUnconfident (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'> for line in open(file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testSources (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testStartingAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap) ... ok testMakeChopped (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeCombined (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeFiltered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMakeFragset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testMix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFromProfile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTarget) ... ok testAssign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testClosest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testFilter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testLongest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testNative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testPrecision (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTargetResidue) ... ok testCompute (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testComputeSingle (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testFlatTorsionMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testGetAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testTarget (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testThreshold (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testNeff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testRank (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHMMLayer) ... ok testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testEquals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testIncludes (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testSurpasses (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHit) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testSort (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestHitList) ... ok testAllLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testConvertScores (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testEmissionSimilarity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testLayers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testScoreUnits (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testSegment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStartInsertion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMM) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok testToHMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder) ... ok testBackground (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testEmission (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testSilent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testTransitions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/hmm.TestState) ... ok testClansEntryAddingAndSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testClansEntrySortingWithCustomKeyFunction (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testClansInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testDuplicateEntryError (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testGetEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClans) ... ok testColorInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testColorSetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testParseClansColorWithCorrectInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testParseClansColorWithWrongInput (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testToClansColor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansColor) ... ok testWrittenIsIdenticalToOriginal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> self._clans_instance.filename)).read().split('\n', 1)[1] ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testForbiddenAssignments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testInstatiation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testUnknownParamFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansParams) ... ok testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansParser) ... ok testPrematureGetter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansParser) ... ok testAddingAndRemovingSeqgroups (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testAddingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testAppendingSeqgroupsFromOtherInstance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testInit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testRemovingClansEntries (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup) ... ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... ok testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testGuess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... ok testReadShifts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0m6puynx' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_d5xybkm' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testA3mToFasta (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpf1xlbw4l' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testFastaToA3m (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmph_5eojn0' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwnab6lpw' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplhsvphfb' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testStrict (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader) ... ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder) ... ok testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadJunk (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadNucleicSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testReadProteinSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser) ... ok testAddAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9mks27cs' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAddSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptgn3j3c1' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok testReadFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader) ... ok testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'> self.data = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser) ... ok testMakeAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testMakeEntry (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory) ... ok testParseFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> content = open(filename).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser) ... ok testLargeHitlist (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions) ... ok testFormatStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpneey5g67' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParseLogScales (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseProbability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser) ... ok testParseRedundantA3M (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxdow7pp7' mode='r' encoding='UTF-8'> generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead array = numpy.fromstring(map_data, numpy.float32, count) ok testReadHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReadRawHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader) ... ok testReconstructHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testWriteDensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testReadFile (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader) ... ok testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> content = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser) ... ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser) ... ok testCommaSplitting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions) ... ok testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID) ... ok testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper) ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestFind) ... ok testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseBiomolecule (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseHetMolecules (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser) ... ok testHetMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) ... ok testNonStandardResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions) ... ok testCombinedMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testFastMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testFileName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testGuessSequenceType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testMapper (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseModels (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseResidueSafe (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testParseStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testRobustMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser) ... ok testMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... ok testModifiedResidueMapping (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'> break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSecStructureParsing (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'> for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConnectedAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testGetAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo) ... ok testNegative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testPositive (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel) ... ok testAtomContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testAtoms (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testCompare (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testConnect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testConnected (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testCutoff (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testPosition (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testResidueContacts (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestContactMap) ... ok testBuild (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testFromString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testGetAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testMatch (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testParse (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestLabel) ... ok testConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testGet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testHasConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testHasElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testNumDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOEPeak) ... ok testConnect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testHasConnectedDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testHasElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testLen (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testMaxIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testMinIntensity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testNumDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testNumProtonDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testProtonDimensions (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testSimpleSecondaryShift (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/nmr.TestRandomCoil) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'> self.a3m = open(self.file).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testHMMSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'> ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsertionAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testMatches (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment) ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpheamfdwv' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1mvsc55k' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestChainSequence) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyodv_8va' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyy9exk6t' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestRichSequence) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4vqmvlsc' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcee903zc' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testExtract (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testIndexeres (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testStrip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testToString (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequence) ... ok testAdd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testFormat (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testGapAt (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testIndexer (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowColumns (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowMap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRowResidues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testRows (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSize (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment) ... ok testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphguzscw3' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpub9qacie' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testEnd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testGaps (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIdenticals (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIdentity (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testIsEmpty (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQstart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testQuery (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testStart (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testSubject (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult) ... ok testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix) ... ok testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testEmptyAlignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm) ... ok testScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix) ... ok testAppendAtom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.ChainRegressions) ... ok testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.ChainRegressions) ... ok testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.ChainRegressions) ... ok testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.ChainRegressions) ... skipped 'may fail on slower machines' testApplyTransformation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAbstractEntity) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestAtom) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAlign (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAlphabet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testClone (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testComputeTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testContains (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testEntryID (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testFromSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testHeader (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testListCoordinates (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSecStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSequence (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSubregion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testTMScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestChain) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testElement (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testFind (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testResidue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testSerialNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testSorting (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testVector (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testComponents (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testFirstModel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestEnsemble) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testFactory (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testHasStructure (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testId (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testInsertionCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testIsModified (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testLabel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testSequenceNumber (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testTorsion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testType (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestResidue) ... ok testAccession (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testFirstChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testFromChain (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testItems (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToFASTA (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... ok testToPDB (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestStructure) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3d9w8rjg' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfvftkv4g' mode='r' encoding='UTF-8'> self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testConversion (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRMSD (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/structure.TestTorsionAngles) ... ok testRmsdMirrorImage (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.Regressions) ... ok testTMSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.Regressions) ... ok testCenterOfMass (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDeg (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDistance (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testDistanceMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFindPairs (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testFitWellordered (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testInertiaTensor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRad (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRadiusOfGyration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testRmsdCur (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testScaleAndFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testSecondMoments (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTmScore (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTmSuperimpose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testTorsionRmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWFit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testWrmsd (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/bio/utils.TestUtils) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestAbstractContainer) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestAbstractNIContainer) ... ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testIndices (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestCollectionContainer) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDeepCopy) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/core/__init__.py:21: DeprecationWarning: Please use assertNotEqual instead. self.assertNotEquals(id(obj), id(copy)) ok testAppend (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testBool (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testGetitem (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testLength (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testRemove (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestDictionaryContainer) ... ok testComparison (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testCreate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testInOperator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testIsMember (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testIterator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testMembers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testMutability (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testNames (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testParseName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testParseValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testRepr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testSerialization (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testStr (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok testValues (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestEnum) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestIterable) ... ok runTest (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/core.TestOrderedDict) ... ok testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestAutoFlushStream) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkd_o_xfq' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testGzipFail (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testLock (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testLockGzip (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testRecusionLimit (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testSimple (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestDumpLoad) ... ok testAllMarkers (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testDel (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testRead (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testReadAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testStartMarker (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryReader) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryWriter) ... ok testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpl8h0rd3s' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteAll (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4a2wg43h' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWriteLine (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestEntryWriter) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpojn8_d8w' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testFlush (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testWrite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestMemoryStream) ... ok testExitCode (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestShell) ... ok testSTDERR (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestShell) ... ok testSTDOUT (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestShell) ... ok testArrayCompatibility (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testDump (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5rt88yj9' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testInsert (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testIteration (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testSQLDataAccess (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testScalar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testSelect (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testUpdate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testWhere (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTable) ... ok testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testCallForwarding (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFile) ... ok testMultipleHandles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFile) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpc6ueynwd' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAutoCleanup (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFolder) ... ok testClose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFolder) ... ok testContextManager (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/io.TestTempFolder) ... ok testCaching (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... ok testDiagonalTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testUnityMultipleTweak (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.InvertibleMatrixTest) ... skipped 'machine-specific' testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.MathRegressions) ... ok testDegree2Radian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testDihedralAngles (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testExp (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testFromPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testLog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testPolar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testRadian2Degree (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testRotationMatrix (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestMath) ... ok testLogTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testLogTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testSimpson2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testTrapezoidal2D (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric.TestNumeric) ... ok testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions) ... ok testFastLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testLeapFrog (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testVelocityVerlet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/numeric/integrators.TestIntegrators) ... ok testAutorcorrelation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCircmean (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCircvar (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testCumulative (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testEntropy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testKurtosis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testSkewness (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics.TestStatFunction) ... ok testNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/ars.TestARS) ... ok testMaxent (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/maxe.TestMaxent) ... skipped 'slow' testConformerMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testSegmentMixture (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/mixtures.TestMixtures) ... ok testSampleFromHistogram (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testTruncatedNormal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/rand.TestRand) ... ok testEnsemble (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testGammaMAP (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testInvGamma (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testInvGammaMAP (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture) ... ok testParameterValidation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestDirichlet) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGamma) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestLaplace) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian) ... ok testLogProb (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameterEstimation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testParameters (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testRandom (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf.TestNormal) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter) ... ok testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testIsVirtual (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter) ... ok testBindTo (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testConstrucor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testFindBaseParameter (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testIsVirtual (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testName (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testSet (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testValue (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter) ... ok testAssignment (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testConstructor (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testParameterChaining (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testProperties (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity) ... ok testAcceptSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC) ... ok testAcceptProposal (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testAcceptanceRate (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testEnergy (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testLastMoveAccepted (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testSample (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testTemperature (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testUpdateStatistics (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC) ... ok testCalcPacc (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok testHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... ok testPropose (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/samplers/__init__.py:1019: RuntimeWarning: covariance is not symmetric positive-semidefinite. cov=self._mass_matrix) /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__init__.py:320: RuntimeWarning: covariance is not symmetric positive-semidefinite. cov=covariance_matrix) ok testHMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testHMCPropagatorMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testNCMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... skipped 'Takes quite a long time to run.' testRWMCPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators) ... ok testHMCStepRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testMDRENS (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testReplicaExchangeMC (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... skipped 'Takes some time, rendered optional by a unit test.' testThermostattedMDRens (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testThermostattedMDRensMM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestMultichain) ... ok testProposeWithMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok testProposeWithoutMomentum (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler) ... ok testHMCPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testNonequilibriumStepPropagator (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testPlainMDPropagation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testReducedHamiltonian (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testReducedHamiltonianPerturbation (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testStep (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator) ... ok testCalcPaccSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok testProposeSwap (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC) ... ok testFiveReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/samplers/__init__.py:867: DeprecationWarning: elementwise comparison failed; this will raise an error in the future. for t2 in trajs2]) ok testFiveReplicasOffset (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testFourReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testTwoReplicas (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory) ... ok testBoltzmann (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testComposite (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testTsallis (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statmech/ensembles.TestEnergy) ... ok testNonparametricWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok testWHAM (build/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-7_csb/build/csb/test/cases/statmech/wham.TestWHAM) ... ok ---------------------------------------------------------------------- Ran 697 tests in 318.181s OK (skipped=6) make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2,python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /build/python-csb-1.2.5+dfsg/debian/python-csb running install running build running build_py running egg_info writing requirements to csb.egg-info/requires.txt writing csb.egg-info/PKG-INFO writing top-level names to csb.egg-info/top_level.txt writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' writing manifest file 'csb.egg-info/SOURCES.txt' running install_lib creating /build/python-csb-1.2.5+dfsg/debian/python-csb creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7 creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/fragments copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/fragments/rosetta.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/fragments copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/fragments/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/fragments copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/fragments copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/hmm copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/hmm/pseudocounts.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/hmm copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/hmm/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/hmm copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/hmm copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/hmm creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/whatif.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/procheck.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/noe.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/mrc.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/cs.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/dssp.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/fasta.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/wwpdb.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/clans.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/hhpred.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/nmr copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/nmr/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/sequence copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/sequence/alignment.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/sequence copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/sequence/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/sequence copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/sequence copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/structure copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/structure/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/structure copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/utils copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/utils/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/utils copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/utils copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/core copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/core/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/core copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/core creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/io/tsv.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/io/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/io creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/numeric/integrators.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/numeric/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/numeric creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/scalemixture.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/rand.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/mixtures.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/maxent.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/ars.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/pdf/parameterized.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/pdf/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc/singlechain.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc/neqsteppropagator.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc/propagators.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc/multichain.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statmech/wham.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statmech/ensembles.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statmech/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statmech creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/data creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/fragments copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/fragments/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/fragments copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/hmm copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/hmm/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/hmm copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/clans copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/clans/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/clans copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/cs copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/cs/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/cs copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/fasta copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/fasta/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/fasta copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/hhpred copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/hhpred/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/hhpred copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/mrc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/mrc/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/mrc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/noe copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/noe/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/noe copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/procheck copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/procheck/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/procheck copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/procheck creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/whatif copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/whatif/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/whatif copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/wwpdb copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/wwpdb/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/wwpdb copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/wwpdb copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/nmr copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/nmr/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/nmr copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/sequence copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/sequence/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/sequence/alignment copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/sequence/alignment/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/sequence/alignment copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/sequence/alignment copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/structure copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/structure/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/structure copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/utils copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/utils/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/utils copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/utils copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/core copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/core/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/core copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/io/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/numeric/integrators.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/numeric/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/scalemixture.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/rand.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/mixtures.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/maxent.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/ars.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/pdf/parameterized.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/pdf/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/samplers copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/samplers/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/samplers copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/samplers copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statmech/wham.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statmech/ensembles.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statmech/__init__.pyc -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/test/app.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython2_2.7_csb/build/csb/build.py -> /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps/bfit.py to bfit.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps/bfite.py to bfite.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps/buildhmm.py to buildhmm.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps/csfrag.py to csfrag.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps/embd.py to embd.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps/helloworld.py to helloworld.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps/hhfrag.py to hhfrag.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps/precision.py to precision.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps/promix.py to promix.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/apps/hhsearch.py to hhsearch.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/fragments/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/fragments/rosetta.py to rosetta.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/hmm/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/clans.py to clans.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/cs.py to cs.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/dssp.py to dssp.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/fasta.py to fasta.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/hhpred.py to hhpred.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/mrc.py to mrc.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/noe.py to noe.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/procheck.py to procheck.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/psipred.py to psipred.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/svg.py to svg.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/vasco.py to vasco.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/whatif.py to whatif.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/io/wwpdb.py to wwpdb.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/nmr/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/sequence/alignment.py to alignment.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/sequence/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/structure/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/utils/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/bio/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/core/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/io/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/io/plots.py to plots.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/io/tsv.py to tsv.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/numeric/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/numeric/integrators.py to integrators.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/pdf/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/samplers/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/ars.py to ars.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/maxent.py to maxent.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/mixtures.py to mixtures.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/rand.py to rand.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statistics/scalemixture.py to scalemixture.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statmech/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statmech/ensembles.py to ensembles.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/statmech/wham.py to wham.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/bio/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/core/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/io/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/numeric/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/numeric/integrators.py to integrators.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/ars.py to ars.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/maxent.py to maxent.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/rand.py to rand.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statmech/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/statmech/wham.py to wham.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/cases/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/test/app.py to app.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/__init__.py to __init__.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb/build.py to build.pyc running install_egg_info Copying csb.egg-info to /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/lib/python2.7/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt running install_scripts Installing csb-csfrag script to /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/bin Installing csb-precision script to /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/bin Installing csb-bfit script to /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/bin Installing csb-test script to /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/bin Installing csb-buildhmm script to /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/bin Installing csb-bfite script to /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/bin Installing csb-embd script to /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/bin Installing csb-hhsearch script to /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/bin Installing csb-promix script to /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/bin Installing csb-hhfrag script to /build/python-csb-1.2.5+dfsg/debian/python-csb/usr/bin I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-csb-1.2.5+dfsg/debian/python3-csb Warning: 'classifiers' should be a list, got type 'tuple' running install running build running build_py running egg_info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt writing entry points to csb.egg-info/entry_points.txt writing requirements to csb.egg-info/requires.txt writing top-level names to csb.egg-info/top_level.txt reading manifest file 'csb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data' writing manifest file 'csb.egg-info/SOURCES.txt' running install_lib creating /build/python-csb-1.2.5+dfsg/debian/python3-csb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7 creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/bfit.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/bfite.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/buildhmm.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/csfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/embd.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/helloworld.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/hhfrag.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/precision.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/promix.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/apps/hhsearch.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/fragments/rosetta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/hmm/pseudocounts.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/whatif.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/procheck.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/noe.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/mrc.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/cs.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/dssp.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/fasta.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/clans.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/hhpred.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/clans.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/cs.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/dssp.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/fasta.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/hhpred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/mrc.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/noe.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/procheck.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/psipred.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/svg.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/vasco.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/whatif.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/io/wwpdb.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/resources copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence/alignment.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/structure/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/utils creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/utils/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/utils copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/core/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io/__pycache__/tsv.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io/plots.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/io/tsv.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric/__pycache__/integrators.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__pycache__/scalemixture.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__pycache__/rand.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__pycache__/mixtures.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__pycache__/maxent.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__pycache__/ars.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech/__pycache__/wham.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech/__pycache__/ensembles.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/test2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/test.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/test.fa -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/struct.ali.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/standard.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/pdbout.txt -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/out.clans -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/modified2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/modified.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/mapping3.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/mapping2.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/mapping.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1nz0a_.a3m -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1ea0a1.hhr -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/d1b24a2.hhm -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/csb.tsv -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/Xeasy2.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/Xeasy1.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/Sparky.peaks -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/ISL5.1.isl -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/3shm_ca.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/3p1u.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/2l01.v3.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/2l01.v2.str -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/2JZC.sum -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1nz9A.frags -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1nz9.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1d3z.regular.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/data/1C3W_10.mrc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/data creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/fragments creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/hmm/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/hmm creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/clans/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/clans creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/cs creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/fasta creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/hhpred creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/mrc creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/noe/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/noe creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/procheck creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/procheck creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/whatif creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/wwpdb copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/nmr creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/alignment creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/alignment copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/structure/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/structure creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/utils creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/utils/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/utils copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/bio/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/core/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/core/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/core creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/io/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/io/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/io creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/numeric/integrators.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__pycache__ creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/samplers creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/samplers/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/samplers copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/ars.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/maxent.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/mixtures.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/rand.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech creating /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-37.pyc -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech/ensembles.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/statmech/wham.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/cases/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/test/app.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/__init__.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb copying /build/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.7_csb/build/csb/build.py -> /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/bfit.py to bfit.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/bfite.py to bfite.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/csfrag.py to csfrag.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/embd.py to embd.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/helloworld.py to helloworld.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/precision.py to precision.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/promix.py to promix.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/clans.py to clans.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/cs.py to cs.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/dssp.py to dssp.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/fasta.py to fasta.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/mrc.py to mrc.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/noe.py to noe.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/procheck.py to procheck.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/psipred.py to psipred.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/svg.py to svg.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/vasco.py to vasco.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/whatif.py to whatif.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/bio/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/core/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io/plots.py to plots.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/io/tsv.py to tsv.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/numeric/integrators.py to integrators.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/ars.py to ars.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/maxent.py to maxent.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/rand.py to rand.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/statmech/wham.py to wham.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/cases/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/test/app.py to app.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb/build.py to build.cpython-37.pyc running install_egg_info Copying csb.egg-info to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.7/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt running install_scripts Installing csb-bfit script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-bfite script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-buildhmm script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-csfrag script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-embd script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhfrag script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-hhsearch script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-precision script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-promix script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin Installing csb-test script to /build/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/python-csb-1.2.5+dfsg' dh_install mkdir -p debian/csb/usr mv debian/python3-csb/usr/bin debian/csb/usr rm -rf debian/python-csb/usr/bin make[1]: Leaving directory '/build/python-csb-1.2.5+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python-csb-doc: substitution variable ${python:Depends} used, but is not defined dpkg-gencontrol: warning: package python-csb: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-csb: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'csb' in '../csb_1.2.5+dfsg-3_all.deb'. dpkg-deb: building package 'python-csb-doc' in '../python-csb-doc_1.2.5+dfsg-3_all.deb'. dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-3_all.deb'. dpkg-deb: building package 'python-csb' in '../python-csb_1.2.5+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-csb_1.2.5+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/31470 and its subdirectories I: Current time: Wed Sep 8 18:39:05 -12 2021 I: pbuilder-time-stamp: 1631169545