I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 17 06:46:44 -12 2020 I: pbuilder-time-stamp: 1597690004 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bx_0.8.2-1.dsc] I: copying [./python-bx_0.8.2.orig.tar.gz] I: copying [./python-bx_0.8.2-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Oct 16 22:29:00 2018 -12 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-bx_0.8.2-1.dsc dpkg-source: info: extracting python-bx in python-bx-0.8.2 dpkg-source: info: unpacking python-bx_0.8.2.orig.tar.gz dpkg-source: info: unpacking python-bx_0.8.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-download.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24572/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='24572' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.500W6kxuEz/pbuilderrc_GNDA --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.500W6kxuEz/b1 --logfile b1/build.log python-bx_0.8.2-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink-sled10-arm64 4.4.0-187-generic #217-Ubuntu SMP Tue Jul 21 04:16:35 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 17 2019 bash -rwxr-xr-x 3 root root 34808 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 35576 Feb 28 2019 cat -rwxr-xr-x 1 root root 60256 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 56096 Feb 28 2019 chmod -rwxr-xr-x 1 root root 64368 Feb 28 2019 chown -rwxr-xr-x 1 root root 134632 Feb 28 2019 cp -rwxr-xr-x 1 root root 129536 Jan 17 2019 dash -rwxr-xr-x 1 root root 97136 Feb 28 2019 date -rwxr-xr-x 1 root root 76736 Feb 28 2019 dd -rwxr-xr-x 1 root root 93752 Feb 28 2019 df -rwxr-xr-x 1 root root 138848 Feb 28 2019 dir -rwxr-xr-x 1 root root 75984 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 27256 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 174304 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 5 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 26 2018 hostname -rwxr-xr-x 1 root root 64472 Feb 28 2019 ln -rwxr-xr-x 1 root root 52544 Jul 26 2018 login -rwxr-xr-x 1 root root 138848 Feb 28 2019 ls -rwxr-xr-x 1 root root 108552 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 76840 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 64480 Feb 28 2019 mknod -rwxr-xr-x 1 root root 39736 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 9 2019 more -rwsr-xr-x 1 root root 47112 Jan 9 2019 mount -rwxr-xr-x 1 root root 14344 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138736 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68440 Feb 28 2019 rm -rwxr-xr-x 1 root root 39624 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 16 20:26 sh -> dash -rwxr-xr-x 1 root root 31384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 72480 Feb 28 2019 stty -rwsr-xr-x 1 root root 59424 Jan 9 2019 su -rwxr-xr-x 1 root root 31416 Feb 28 2019 sync -rwxr-xr-x 1 root root 449416 Apr 23 2019 tar -rwxr-xr-x 1 root root 10560 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 88968 Feb 28 2019 touch -rwxr-xr-x 1 root root 27256 Feb 28 2019 true -rwxr-xr-x 1 root root 14264 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 9 2019 umount -rwxr-xr-x 1 root root 31384 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138848 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/24572/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 9), dh-python, zlib1g-dev, python-setuptools, python-all-dev, python-nose, python-numpy, cython, python3-setuptools, python3-all-dev, python3-nose, python3-numpy, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python-all-dev; however: Package python-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python-nose; however: Package python-nose is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython; however: Package cython is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cython{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-dev{a} python-minimal{a} python-nose{a} python-numpy{a} python-pkg-resources{a} python-setuptools{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-pkg-resources{a} python3-setuptools{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 75.9 MB of archives. After unpacking 245 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 libpython2.7-minimal arm64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 python2.7-minimal arm64 2.7.16-2+deb10u1 [1292 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 python2-minimal arm64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 python-minimal arm64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 libexpat1 arm64 2.2.6-2+deb10u1 [85.4 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 libreadline7 arm64 7.0-5 [134 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 libpython2.7-stdlib arm64 2.7.16-2+deb10u1 [1890 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 python2.7 arm64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libpython2-stdlib arm64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 libpython-stdlib arm64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 python2 arm64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 python arm64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 libpython3.7-minimal arm64 3.7.3-2+deb10u2 [588 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 python3.7-minimal arm64 3.7.3-2+deb10u2 [1404 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 python3-minimal arm64 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 libmpdec2 arm64 2.4.2-2 [77.7 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libpython3.7-stdlib arm64 3.7.3-2+deb10u2 [1641 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 python3.7 arm64 3.7.3-2+deb10u2 [330 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libpython3-stdlib arm64 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 python3 arm64 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 39 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 cython arm64 0.29.2-2 [1244 kB] Get: 42 http://deb.debian.org/debian buster/main arm64 cython3 arm64 0.29.2-2 [1259 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 python3-distutils all 3.7.3-1 [142 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 dh-python all 3.20190308 [99.3 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libblas3 arm64 3.8.0-2 [100 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libexpat1-dev arm64 2.2.6-2+deb10u1 [128 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 liblapack3 arm64 3.8.0-2 [1489 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libpython2.7 arm64 2.7.16-2+deb10u1 [958 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 libpython2.7-dev arm64 2.7.16-2+deb10u1 [31.5 MB] Get: 68 http://deb.debian.org/debian buster/main arm64 libpython2-dev arm64 2.7.16-1 [20.9 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libpython-dev arm64 2.7.16-1 [20.9 kB] Get: 70 http://deb.debian.org/debian buster/main arm64 libpython-all-dev arm64 2.7.16-1 [1064 B] Get: 71 http://deb.debian.org/debian buster/main arm64 libpython3.7 arm64 3.7.3-2+deb10u2 [1371 kB] Get: 72 http://deb.debian.org/debian buster/main arm64 libpython3.7-dev arm64 3.7.3-2+deb10u2 [2380 kB] Get: 73 http://deb.debian.org/debian buster/main arm64 libpython3-dev arm64 3.7.3-1 [20.1 kB] Get: 74 http://deb.debian.org/debian buster/main arm64 libpython3-all-dev arm64 3.7.3-1 [1068 B] Get: 75 http://deb.debian.org/debian buster/main arm64 python-all arm64 2.7.16-1 [1044 B] Get: 76 http://deb.debian.org/debian buster/main arm64 python2.7-dev arm64 2.7.16-2+deb10u1 [296 kB] Get: 77 http://deb.debian.org/debian buster/main arm64 python2-dev arm64 2.7.16-1 [1216 B] Get: 78 http://deb.debian.org/debian buster/main arm64 python-dev arm64 2.7.16-1 [1192 B] Get: 79 http://deb.debian.org/debian buster/main arm64 python-all-dev arm64 2.7.16-1 [1068 B] Get: 80 http://deb.debian.org/debian buster/main arm64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 81 http://deb.debian.org/debian buster/main arm64 python-nose all 1.3.7-4 [132 kB] Get: 82 http://deb.debian.org/debian buster/main arm64 python-numpy arm64 1:1.16.2-1 [1975 kB] Get: 83 http://deb.debian.org/debian buster/main arm64 python-setuptools all 40.8.0-1 [382 kB] Get: 84 http://deb.debian.org/debian buster/main arm64 python3-all arm64 3.7.3-1 [1068 B] Get: 85 http://deb.debian.org/debian buster/main arm64 python3.7-dev arm64 3.7.3-2+deb10u2 [509 kB] Get: 86 http://deb.debian.org/debian buster/main arm64 python3-dev arm64 3.7.3-1 [1264 B] Get: 87 http://deb.debian.org/debian buster/main arm64 python3-all-dev arm64 3.7.3-1 [1064 B] Get: 88 http://deb.debian.org/debian buster/main arm64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 89 http://deb.debian.org/debian buster/main arm64 python3-nose all 1.3.7-4 [132 kB] Get: 90 http://deb.debian.org/debian buster/main arm64 python3-numpy arm64 1:1.16.2-1 [1991 kB] Get: 91 http://deb.debian.org/debian buster/main arm64 python3-setuptools all 40.8.0-1 [306 kB] Get: 92 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Fetched 75.9 MB in 13s (6028 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_arm64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... 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Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20631 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_arm64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Unpacking libpython3.7-stdlib:arm64 (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u2_arm64.deb ... Unpacking python3.7 (3.7.3-2+deb10u2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... 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Setting up libgfortran5:arm64 (8.3.0-6) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libbsd0:arm64 (0.9.1-2) ... Setting up libelf1:arm64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:arm64 (3.7.3-2+deb10u2) ... Setting up libpython3.7:arm64 (3.7.3-2+deb10u2) ... Setting up libtool (2.4.6-9) ... Setting up libpython3.7-dev:arm64 (3.7.3-2+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:arm64 (2.7.16-2+deb10u1) ... Setting up libblas3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libpython3-stdlib:arm64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u2) ... Setting up libpython2.7:arm64 (2.7.16-2+deb10u1) ... Setting up liblapack3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libpython2.7-dev:arm64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:arm64 (3.7.3-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:arm64 (2.7.16-1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:arm64 (2.7.16-1) ... Setting up libpython3-all-dev:arm64 (3.7.3-1) ... Setting up cython3 (0.29.2-2) ... Setting up libpython2-dev:arm64 (2.7.16-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up cython (0.29.2-2) ... Setting up python2-dev (2.7.16-1) ... Setting up python3-setuptools (40.8.0-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python3-all (3.7.3-1) ... Setting up python-all (2.7.16-1) ... Setting up python3-nose (1.3.7-4) ... Setting up libpython-dev:arm64 (2.7.16-1) ... Setting up python3-dev (3.7.3-1) ... Setting up python-setuptools (40.8.0-1) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up python-dev (2.7.16-1) ... Setting up python3-all-dev (3.7.3-1) ... Setting up libpython-all-dev:arm64 (2.7.16-1) ... Setting up python-numpy (1:1.16.2-1) ... Setting up python-nose (1.3.7-4) ... Setting up python-all-dev (2.7.16-1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-bx-0.8.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-bx dpkg-buildpackage: info: source version 0.8.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-bx-0.8.2' dh_auto_clean I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/python-bx-0.8.2/.pybuild/cpython2_2.7/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/python-bx-0.8.2/.pybuild/cpython3_3.7/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it find -name "*.pyx" | sed 's/pyx$/c/' | xargs rm -f grep -rli "Generated by Cython" lib/ | xargs -r rm rm -rf lib/bx_python.egg-info make[1]: Leaving directory '/build/python-bx-0.8.2' dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python2,python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build running build running build_py copying lib/psyco_full.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras copying lib/bx_extras/stats.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras copying lib/bx_extras/pyparsing.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras copying lib/bx_extras/pstat.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras copying lib/bx_extras/lrucache.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras copying lib/bx_extras/fpconst_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras copying lib/bx_extras/fpconst.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras copying lib/bx_extras/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/wiggle_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/wiggle.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/seqmapping_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/seqmapping.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/interval_index_file_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/interval_index_file.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/gene_reader.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/filter.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/bitset_utils.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/bitset_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/bitset_builders.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/binned_array_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/binned_array.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx copying lib/bx/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/tabular copying lib/bx/tabular/io.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/tabular copying lib/bx/tabular/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/tabular creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq copying lib/bx/seq/twobit_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq copying lib/bx/seq/twobit.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq copying lib/bx/seq/seq_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq copying lib/bx/seq/seq.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq copying lib/bx/seq/qdna_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq copying lib/bx/seq/qdna.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq copying lib/bx/seq/nib_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq copying lib/bx/seq/nib.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq copying lib/bx/seq/fasta_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq copying lib/bx/seq/fasta.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq copying lib/bx/seq/core.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq copying lib/bx/seq/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm copying lib/bx/pwm/pwm_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm copying lib/bx/pwm/pwm_score_positions.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm copying lib/bx/pwm/pwm_score_motifs.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm copying lib/bx/pwm/pwm_score_maf.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm copying lib/bx/pwm/position_weight_matrix.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm copying lib/bx/pwm/maf_select_motifs.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm copying lib/bx/pwm/bed_score_aligned_string.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm copying lib/bx/pwm/bed_score_aligned_pwm.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm copying lib/bx/pwm/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/phylo copying lib/bx/phylo/phast_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/phylo copying lib/bx/phylo/phast.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/phylo copying lib/bx/phylo/newick_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/phylo copying lib/bx/phylo/newick.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/phylo copying lib/bx/phylo/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/phylo creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif copying lib/bx/motif/pwm_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif copying lib/bx/motif/pwm.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif copying lib/bx/motif/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc copying lib/bx/misc/seeklzop_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc copying lib/bx/misc/seeklzop.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc copying lib/bx/misc/seekbzip2_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc copying lib/bx/misc/seekbzip2.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc copying lib/bx/misc/readlengths.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc copying lib/bx/misc/filecache_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc copying lib/bx/misc/filecache.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc copying lib/bx/misc/cdb_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc copying lib/bx/misc/cdb.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc copying lib/bx/misc/binary_file.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc copying lib/bx/misc/bgzf_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc copying lib/bx/misc/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intseq copying lib/bx/intseq/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intseq creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals copying lib/bx/intervals/random_intervals.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals copying lib/bx/intervals/io.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals copying lib/bx/intervals/intersection_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals copying lib/bx/intervals/cluster_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals copying lib/bx/intervals/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/cookbook copying lib/bx/cookbook/progress_bar.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/cookbook copying lib/bx/cookbook/doc_optparse.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/cookbook copying lib/bx/cookbook/attribute.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/cookbook copying lib/bx/cookbook/argparse.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/cookbook copying lib/bx/cookbook/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/cookbook creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi copying lib/bx/bbi/bigwig_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi copying lib/bx/bbi/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/arrays copying lib/bx/arrays/array_tree_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/arrays copying lib/bx/arrays/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/arrays creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align copying lib/bx/align/score_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align copying lib/bx/align/score.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align copying lib/bx/align/maf_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align copying lib/bx/align/maf.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align copying lib/bx/align/lav_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align copying lib/bx/align/lav.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align copying lib/bx/align/epo_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align copying lib/bx/align/epo.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align copying lib/bx/align/core.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align copying lib/bx/align/axt.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align copying lib/bx/align/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/logo copying lib/bx/motif/logo/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/logo creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/io copying lib/bx/motif/io/transfac_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/io copying lib/bx/motif/io/transfac.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/io copying lib/bx/motif/io/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/io creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations copying lib/bx/intervals/operations/subtract.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations copying lib/bx/intervals/operations/quicksect.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations copying lib/bx/intervals/operations/merge.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations copying lib/bx/intervals/operations/join.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations copying lib/bx/intervals/operations/intersect.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations copying lib/bx/intervals/operations/find_clusters.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations copying lib/bx/intervals/operations/coverage.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations copying lib/bx/intervals/operations/concat.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations copying lib/bx/intervals/operations/complement.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations copying lib/bx/intervals/operations/base_coverage.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations copying lib/bx/intervals/operations/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/tools copying lib/bx/align/tools/tile.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/tools copying lib/bx/align/tools/thread.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/tools copying lib/bx/align/tools/fuse.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/tools copying lib/bx/align/tools/chop.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/tools copying lib/bx/align/tools/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/tools creating /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask copying lib/bx/align/sitemask/sitemask_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask copying lib/bx/align/sitemask/quality.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask copying lib/bx/align/sitemask/cpg.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask copying lib/bx/align/sitemask/core.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask copying lib/bx/align/sitemask/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask copying lib/bx/motif/logo/template.ps -> /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/logo running build_ext cythoning lib/bx/bitset.pyx to lib/bx/bitset.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/bitset.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.bitset' extension creating build creating build/temp.linux-arm64-2.7 creating build/temp.linux-arm64-2.7/lib creating build/temp.linux-arm64-2.7/lib/bx creating build/temp.linux-arm64-2.7/src creating build/temp.linux-arm64-2.7/src/kent aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python2.7 -c lib/bx/bitset.c -o build/temp.linux-arm64-2.7/lib/bx/bitset.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python2.7 -c src/binBits.c -o build/temp.linux-arm64-2.7/src/binBits.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python2.7 -c src/kent/bits.c -o build/temp.linux-arm64-2.7/src/kent/bits.o src/kent/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $"; ^~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python2.7 -c src/kent/common.c -o build/temp.linux-arm64-2.7/src/kent/common.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/bitset.o build/temp.linux-arm64-2.7/src/binBits.o build/temp.linux-arm64-2.7/src/kent/bits.o build/temp.linux-arm64-2.7/src/kent/common.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bitset.so cythoning lib/bx/intervals/intersection.pyx to lib/bx/intervals/intersection.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/intervals/intersection.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.intervals.intersection' extension creating build/temp.linux-arm64-2.7/lib/bx/intervals aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c lib/bx/intervals/intersection.c -o build/temp.linux-arm64-2.7/lib/bx/intervals/intersection.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/intervals/intersection.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/intersection.so cythoning lib/bx/align/_core.pyx to lib/bx/align/_core.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/align/_core.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.align._core' extension creating build/temp.linux-arm64-2.7/lib/bx/align aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c lib/bx/align/_core.c -o build/temp.linux-arm64-2.7/lib/bx/align/_core.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/align/_core.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/_core.so cythoning lib/bx/seq/_nib.pyx to lib/bx/seq/_nib.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/seq/_nib.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.seq._nib' extension creating build/temp.linux-arm64-2.7/lib/bx/seq aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c lib/bx/seq/_nib.c -o build/temp.linux-arm64-2.7/lib/bx/seq/_nib.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/seq/_nib.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/_nib.so cythoning lib/bx/seq/_twobit.pyx to lib/bx/seq/_twobit.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/seq/_twobit.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.seq._twobit' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c lib/bx/seq/_twobit.c -o build/temp.linux-arm64-2.7/lib/bx/seq/_twobit.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/seq/_twobit.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/_twobit.so cythoning lib/bx/_seqmapping.pyx to lib/bx/_seqmapping.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/_seqmapping.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx._seqmapping' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c lib/bx/_seqmapping.c -o build/temp.linux-arm64-2.7/lib/bx/_seqmapping.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/_seqmapping.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/_seqmapping.so cythoning lib/bx/misc/bgzf.pyx to lib/bx/misc/bgzf.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/misc/bgzf.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.misc.bgzf' extension creating build/temp.linux-arm64-2.7/lib/bx/misc creating build/temp.linux-arm64-2.7/src/samtools aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python2.7 -c lib/bx/misc/bgzf.c -o build/temp.linux-arm64-2.7/lib/bx/misc/bgzf.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python2.7 -c src/samtools/bgzf.c -o build/temp.linux-arm64-2.7/src/samtools/bgzf.o In file included from src/samtools/bgzf.c:38: src/samtools/khash.h:129:31: warning: function declaration isn’t a prototype [-Wstrict-prototypes] static inline kh_##name##_t *kh_init_##name() { \ ^~~~~~~~ src/samtools/khash.h:468:2: note: in expansion of macro ‘KHASH_INIT’ KHASH_INIT(name, uint64_t, khval_t, 1, kh_int64_hash_func, kh_int64_hash_equal) ^~~~~~~~~~ src/samtools/bgzf.c:44:1: note: in expansion of macro ‘KHASH_MAP_INIT_INT64’ KHASH_MAP_INIT_INT64(cache, cache_t) ^~~~~~~~~~~~~~~~~~~~ src/samtools/bgzf.c:114:14: warning: function declaration isn’t a prototype [-Wstrict-prototypes] static BGZF *bgzf_read_init() ^~~~~~~~~~~~~~ src/samtools/bgzf.c: In function ‘bgzf_close’: src/samtools/bgzf.c:603:8: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] int count, block_length = deflate_block(fp, 0); ^~~~~ src/samtools/bgzf.c: In function ‘bgzf_check_EOF’: src/samtools/bgzf.c:662:2: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(buf, 1, 28, fp->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/misc/bgzf.o build/temp.linux-arm64-2.7/src/samtools/bgzf.o -lz -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/bgzf.so cythoning lib/bx/intervals/cluster.pyx to lib/bx/intervals/cluster.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/intervals/cluster.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.intervals.cluster' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python2.7 -c lib/bx/intervals/cluster.c -o build/temp.linux-arm64-2.7/lib/bx/intervals/cluster.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python2.7 -c src/cluster.c -o build/temp.linux-arm64-2.7/src/cluster.o src/cluster.c:253:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes] int main() { ^~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/intervals/cluster.o build/temp.linux-arm64-2.7/src/cluster.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/cluster.so cythoning lib/bx/pwm/_position_weight_matrix.pyx to lib/bx/pwm/_position_weight_matrix.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/pwm/_position_weight_matrix.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.pwm._position_weight_matrix' extension creating build/temp.linux-arm64-2.7/lib/bx/pwm aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python2.7 -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.linux-arm64-2.7/lib/bx/pwm/_position_weight_matrix.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python2.7 -c src/pwm_utils.c -o build/temp.linux-arm64-2.7/src/pwm_utils.o src/pwm_utils.c: In function ‘main’: src/pwm_utils.c:11:27: warning: implicit declaration of function ‘strlen’ [-Wimplicit-function-declaration] int string_size = strlen(argv[1]); ^~~~~~ src/pwm_utils.c:11:27: warning: incompatible implicit declaration of built-in function ‘strlen’ src/pwm_utils.c:11:27: note: include ‘’ or provide a declaration of ‘strlen’ src/pwm_utils.c:5:1: +#include src/pwm_utils.c:11:27: int string_size = strlen(argv[1]); ^~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/pwm/_position_weight_matrix.o build/temp.linux-arm64-2.7/src/pwm_utils.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm/_position_weight_matrix.so cythoning lib/bx/motif/_pwm.pyx to lib/bx/motif/_pwm.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/motif/_pwm.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.motif._pwm' extension creating build/temp.linux-arm64-2.7/lib/bx/motif aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c lib/bx/motif/_pwm.c -o build/temp.linux-arm64-2.7/lib/bx/motif/_pwm.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/motif/_pwm.c:611: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/motif/_pwm.c:611: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/motif/_pwm.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/_pwm.so cythoning lib/bx/arrays/array_tree.pyx to lib/bx/arrays/array_tree.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/arrays/array_tree.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.arrays.array_tree' extension creating build/temp.linux-arm64-2.7/lib/bx/arrays aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c lib/bx/arrays/array_tree.c -o build/temp.linux-arm64-2.7/lib/bx/arrays/array_tree.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/arrays/array_tree.c:613: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/arrays/array_tree.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/arrays/array_tree.so cythoning lib/bx/bbi/bpt_file.pyx to lib/bx/bbi/bpt_file.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/bbi/bpt_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.bbi.bpt_file' extension creating build/temp.linux-arm64-2.7/lib/bx/bbi aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c lib/bx/bbi/bpt_file.c -o build/temp.linux-arm64-2.7/lib/bx/bbi/bpt_file.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/bbi/bpt_file.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi/bpt_file.so cythoning lib/bx/bbi/cirtree_file.pyx to lib/bx/bbi/cirtree_file.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/bbi/cirtree_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.bbi.cirtree_file' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c lib/bx/bbi/cirtree_file.c -o build/temp.linux-arm64-2.7/lib/bx/bbi/cirtree_file.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/bbi/cirtree_file.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi/cirtree_file.so cythoning lib/bx/bbi/bbi_file.pyx to lib/bx/bbi/bbi_file.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/bbi/bbi_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.bbi.bbi_file' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c lib/bx/bbi/bbi_file.c -o build/temp.linux-arm64-2.7/lib/bx/bbi/bbi_file.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bbi_file.c:613: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/bbi/bbi_file.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi/bbi_file.so cythoning lib/bx/bbi/bigwig_file.pyx to lib/bx/bbi/bigwig_file.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/bbi/bigwig_file.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.bbi.bigwig_file' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c lib/bx/bbi/bigwig_file.c -o build/temp.linux-arm64-2.7/lib/bx/bbi/bigwig_file.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bigwig_file.c:613: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: lib/bx/bbi/bigwig_file.c:3294:18: warning: ‘__pyx_v_val’ may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_t_2 = ((struct __pyx_vtabstruct_2bx_3bbi_11bigwig_file_BigWigBlockHandler *)__pyx_v_self->__pyx_base.__pyx_vtab)->handle_interval_value(__pyx_v_self, __pyx_v_s, __pyx_v_e, __pyx_v_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 75, __pyx_L1_error) ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/bx/bbi/bigwig_file.c:2651:7: warning: ‘__pyx_v_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] int __pyx_v_e; ^~~~~~~~~ lib/bx/bbi/bigwig_file.c:2650:7: warning: ‘__pyx_v_s’ may be used uninitialized in this function [-Wmaybe-uninitialized] int __pyx_v_s; ^~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/bbi/bigwig_file.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi/bigwig_file.so cythoning lib/bx/bbi/bigbed_file.pyx to lib/bx/bbi/bigbed_file.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/bbi/bigbed_file.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.bbi.bigbed_file' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c lib/bx/bbi/bigbed_file.c -o build/temp.linux-arm64-2.7/lib/bx/bbi/bigbed_file.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bigbed_file.c:613: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/bbi/bigbed_file.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi/bigbed_file.so cythoning lib/bx/align/_epo.pyx to lib/bx/align/_epo.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/align/_epo.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.align._epo' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c lib/bx/align/_epo.c -o build/temp.linux-arm64-2.7/lib/bx/align/_epo.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/align/_epo.c:613: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/align/_epo.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/_epo.so cythoning lib/bx/arrays/bed.pyx to lib/bx/arrays/bed.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/arrays/bed.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.arrays.bed' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c lib/bx/arrays/bed.c -o build/temp.linux-arm64-2.7/lib/bx/arrays/bed.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/arrays/bed.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/arrays/bed.so cythoning lib/bx/arrays/wiggle.pyx to lib/bx/arrays/wiggle.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/arrays/wiggle.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: lib/bx/arrays/wiggle.pyx:94:20: Unreachable code building 'bx.arrays.wiggle' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c lib/bx/arrays/wiggle.c -o build/temp.linux-arm64-2.7/lib/bx/arrays/wiggle.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/arrays/wiggle.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/arrays/wiggle.so cythoning lib/bx/align/sitemask/_cpg.pyx to lib/bx/align/sitemask/_cpg.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/align/sitemask/_cpg.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.align.sitemask._cpg' extension creating build/temp.linux-arm64-2.7/lib/bx/align/sitemask aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c lib/bx/align/sitemask/_cpg.c -o build/temp.linux-arm64-2.7/lib/bx/align/sitemask/_cpg.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c lib/bx/align/sitemask/find_cpg.c -o build/temp.linux-arm64-2.7/lib/bx/align/sitemask/find_cpg.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/align/sitemask/_cpg.o build/temp.linux-arm64-2.7/lib/bx/align/sitemask/find_cpg.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask/_cpg.so cythoning lib/bx/intseq/ngramcount.pyx to lib/bx/intseq/ngramcount.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/intseq/ngramcount.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.intseq.ngramcount' extension creating build/temp.linux-arm64-2.7/lib/bx/intseq aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python2.7 -c lib/bx/intseq/ngramcount.c -o build/temp.linux-arm64-2.7/lib/bx/intseq/ngramcount.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/intseq/ngramcount.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intseq/ngramcount.so cythoning lib/bx/misc/_seekbzip2.pyx to lib/bx/misc/_seekbzip2.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.2/lib/bx/misc/_seekbzip2.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.misc._seekbzip2' extension creating build/temp.linux-arm64-2.7/src/bunzip aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python2.7 -c lib/bx/misc/_seekbzip2.c -o build/temp.linux-arm64-2.7/lib/bx/misc/_seekbzip2.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python2.7 -c src/bunzip/micro-bunzip.c -o build/temp.linux-arm64-2.7/src/bunzip/micro-bunzip.o src/bunzip/micro-bunzip.c: In function ‘start_bunzip’: src/bunzip/micro-bunzip.c:629:12: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] bd->inbuf=inbuf; ^ src/bunzip/micro-bunzip.c: In function ‘get_next_block’: src/bunzip/micro-bunzip.c:129:51: warning: ‘limit’ may be used uninitialized in this function [-Wmaybe-uninitialized] int dbufCount,nextSym,dbufSize,groupCount,*base,*limit,selector, ^~~~~ src/bunzip/micro-bunzip.c:129:45: warning: ‘base’ may be used uninitialized in this function [-Wmaybe-uninitialized] int dbufCount,nextSym,dbufSize,groupCount,*base,*limit,selector, ^~~~ src/bunzip/micro-bunzip.c:128:21: warning: ‘hufGroup’ may be used uninitialized in this function [-Wmaybe-uninitialized] struct group_data *hufGroup; ^~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-QCkEc0/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-2.7/lib/bx/misc/_seekbzip2.o build/temp.linux-arm64-2.7/src/bunzip/micro-bunzip.o -o /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/_seekbzip2.so running build_scripts creating build/scripts-2.7 copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-2.7 copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-2.7 copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-2.7 copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-2.7 copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-2.7 copying and adjusting scripts/tfloc_summary.py -> build/scripts-2.7 copying and adjusting scripts/table_filter.py -> build/scripts-2.7 copying and adjusting scripts/table_add_column.py -> build/scripts-2.7 copying and adjusting scripts/random_lines.py -> build/scripts-2.7 copying and adjusting scripts/qv_to_bqv.py -> build/scripts-2.7 copying and adjusting scripts/pretty_table.py -> build/scripts-2.7 copying and adjusting scripts/prefix_lines.py -> build/scripts-2.7 copying and adjusting scripts/out_to_chain.py -> build/scripts-2.7 copying and adjusting scripts/one_field_per_line.py -> build/scripts-2.7 copying and adjusting scripts/nib_length.py -> build/scripts-2.7 copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-2.7 copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-2.7 copying and adjusting scripts/mask_quality.py -> build/scripts-2.7 copying and adjusting scripts/maf_word_frequency.py -> build/scripts-2.7 copying and adjusting scripts/maf_truncate.py -> build/scripts-2.7 copying and adjusting scripts/maf_translate_chars.py -> build/scripts-2.7 copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-2.7 copying and adjusting scripts/maf_to_fasta.py -> build/scripts-2.7 copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-2.7 copying and adjusting scripts/maf_to_axt.py -> build/scripts-2.7 copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-2.7 copying and adjusting scripts/maf_tile_2.py -> build/scripts-2.7 copying and adjusting scripts/maf_tile.py -> build/scripts-2.7 copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-2.7 copying and adjusting scripts/maf_split_by_src.py -> build/scripts-2.7 copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-2.7 copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-2.7 copying and adjusting scripts/maf_select.py -> build/scripts-2.7 copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-2.7 copying and adjusting scripts/maf_randomize.py -> build/scripts-2.7 copying and adjusting scripts/maf_print_scores.py -> build/scripts-2.7 copying and adjusting scripts/maf_print_chroms.py -> build/scripts-2.7 copying and adjusting scripts/maf_percent_identity.py -> build/scripts-2.7 copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-2.7 copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-2.7 copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-2.7 copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-2.7 copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-2.7 copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-2.7 copying and adjusting scripts/maf_gc_content.py -> build/scripts-2.7 copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-2.7 copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-2.7 copying and adjusting scripts/maf_filter.py -> build/scripts-2.7 copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-2.7 copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-2.7 copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-2.7 copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-2.7 copying and adjusting scripts/maf_div_sites.py -> build/scripts-2.7 copying and adjusting scripts/maf_covered_regions.py -> build/scripts-2.7 copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-2.7 copying and adjusting scripts/maf_count.py -> build/scripts-2.7 copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-2.7 copying and adjusting scripts/maf_col_counts.py -> build/scripts-2.7 copying and adjusting scripts/maf_chunk.py -> build/scripts-2.7 copying and adjusting scripts/maf_chop.py -> build/scripts-2.7 copying and adjusting scripts/maf_build_index.py -> build/scripts-2.7 copying and adjusting scripts/mMK_bitset.py -> build/scripts-2.7 copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-2.7 copying and adjusting scripts/line_select.py -> build/scripts-2.7 copying and adjusting scripts/lav_to_maf.py -> build/scripts-2.7 copying and adjusting scripts/lav_to_axt.py -> build/scripts-2.7 copying and adjusting scripts/interval_join.py -> build/scripts-2.7 copying and adjusting scripts/interval_count_intersections.py -> build/scripts-2.7 copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-2.7 copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-2.7 copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-2.7 copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-2.7 copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-2.7 copying and adjusting scripts/bnMapper.py -> build/scripts-2.7 copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-2.7 copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-2.7 copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-2.7 copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-2.7 copying and adjusting scripts/bed_intersect.py -> build/scripts-2.7 copying and adjusting scripts/bed_extend_to.py -> build/scripts-2.7 copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-2.7 copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-2.7 copying and adjusting scripts/bed_coverage.py -> build/scripts-2.7 copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-2.7 copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-2.7 copying and adjusting scripts/bed_complement.py -> build/scripts-2.7 copying and adjusting scripts/bed_build_windows.py -> build/scripts-2.7 copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-2.7 copying and adjusting scripts/axt_to_maf.py -> build/scripts-2.7 copying and adjusting scripts/axt_to_lav.py -> build/scripts-2.7 copying and adjusting scripts/axt_to_fasta.py -> build/scripts-2.7 copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-2.7 copying and adjusting scripts/align_print_template.py -> build/scripts-2.7 copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-2.7 changing mode of build/scripts-2.7/wiggle_to_simple.py from 644 to 755 changing mode of build/scripts-2.7/wiggle_to_chr_binned_array.py from 644 to 755 changing mode of build/scripts-2.7/wiggle_to_binned_array.py from 644 to 755 changing mode of build/scripts-2.7/wiggle_to_array_tree.py from 644 to 755 changing mode of build/scripts-2.7/ucsc_gene_table_to_intervals.py from 644 to 755 changing mode of build/scripts-2.7/tfloc_summary.py from 644 to 755 changing mode of build/scripts-2.7/table_filter.py from 644 to 755 changing mode of build/scripts-2.7/table_add_column.py from 644 to 755 changing mode of build/scripts-2.7/random_lines.py from 644 to 755 changing mode of build/scripts-2.7/qv_to_bqv.py from 644 to 755 changing mode of build/scripts-2.7/pretty_table.py from 644 to 755 changing mode of build/scripts-2.7/prefix_lines.py from 644 to 755 changing mode of build/scripts-2.7/out_to_chain.py from 644 to 755 changing mode of build/scripts-2.7/one_field_per_line.py from 644 to 755 changing mode of build/scripts-2.7/nib_length.py from 644 to 755 changing mode of build/scripts-2.7/nib_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-2.7/nib_chrom_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-2.7/mask_quality.py from 644 to 755 changing mode of build/scripts-2.7/maf_word_frequency.py from 644 to 755 changing mode of build/scripts-2.7/maf_truncate.py from 644 to 755 changing mode of build/scripts-2.7/maf_translate_chars.py from 644 to 755 changing mode of build/scripts-2.7/maf_to_int_seqs.py from 644 to 755 changing mode of build/scripts-2.7/maf_to_fasta.py from 644 to 755 changing mode of build/scripts-2.7/maf_to_concat_fasta.py from 644 to 755 changing mode of build/scripts-2.7/maf_to_axt.py from 644 to 755 changing mode of build/scripts-2.7/maf_tile_2bit.py from 644 to 755 changing mode of build/scripts-2.7/maf_tile_2.py from 644 to 755 changing mode of build/scripts-2.7/maf_tile.py from 644 to 755 changing mode of build/scripts-2.7/maf_thread_for_species.py from 644 to 755 changing mode of build/scripts-2.7/maf_split_by_src.py from 644 to 755 changing mode of build/scripts-2.7/maf_species_in_all_files.py from 644 to 755 changing mode of build/scripts-2.7/maf_shuffle_columns.py from 644 to 755 changing mode of build/scripts-2.7/maf_select.py from 644 to 755 changing mode of build/scripts-2.7/maf_region_coverage_by_src.py from 644 to 755 changing mode of build/scripts-2.7/maf_randomize.py from 644 to 755 changing mode of build/scripts-2.7/maf_print_scores.py from 644 to 755 changing mode of build/scripts-2.7/maf_print_chroms.py from 644 to 755 changing mode of build/scripts-2.7/maf_percent_identity.py from 644 to 755 changing mode of build/scripts-2.7/maf_percent_columns_matching.py from 644 to 755 changing mode of build/scripts-2.7/maf_mean_length_ungapped_piece.py from 644 to 755 changing mode of build/scripts-2.7/maf_mask_cpg.py from 644 to 755 changing mode of build/scripts-2.7/maf_mapping_word_frequency.py from 644 to 755 changing mode of build/scripts-2.7/maf_limit_to_species.py from 644 to 755 changing mode of build/scripts-2.7/maf_interval_alignibility.py from 644 to 755 changing mode of build/scripts-2.7/maf_gc_content.py from 644 to 755 changing mode of build/scripts-2.7/maf_gap_frequency.py from 644 to 755 changing mode of build/scripts-2.7/maf_filter_max_wc.py from 644 to 755 changing mode of build/scripts-2.7/maf_filter.py from 644 to 755 changing mode of build/scripts-2.7/maf_extract_ranges_indexed.py from 644 to 755 changing mode of build/scripts-2.7/maf_extract_ranges.py from 644 to 755 changing mode of build/scripts-2.7/maf_extract_chrom_ranges.py from 644 to 755 changing mode of build/scripts-2.7/maf_drop_overlapping.py from 644 to 755 changing mode of build/scripts-2.7/maf_div_sites.py from 644 to 755 changing mode of build/scripts-2.7/maf_covered_regions.py from 644 to 755 changing mode of build/scripts-2.7/maf_covered_ranges.py from 644 to 755 changing mode of build/scripts-2.7/maf_count.py from 644 to 755 changing mode of build/scripts-2.7/maf_col_counts_all.py from 644 to 755 changing mode of build/scripts-2.7/maf_col_counts.py from 644 to 755 changing mode of build/scripts-2.7/maf_chunk.py from 644 to 755 changing mode of build/scripts-2.7/maf_chop.py from 644 to 755 changing mode of build/scripts-2.7/maf_build_index.py from 644 to 755 changing mode of build/scripts-2.7/mMK_bitset.py from 644 to 755 changing mode of build/scripts-2.7/lzop_build_offset_table.py from 644 to 755 changing mode of build/scripts-2.7/line_select.py from 644 to 755 changing mode of build/scripts-2.7/lav_to_maf.py from 644 to 755 changing mode of build/scripts-2.7/lav_to_axt.py from 644 to 755 changing mode of build/scripts-2.7/interval_join.py from 644 to 755 changing mode of build/scripts-2.7/interval_count_intersections.py from 644 to 755 changing mode of build/scripts-2.7/int_seqs_to_char_strings.py from 644 to 755 changing mode of build/scripts-2.7/get_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-2.7/gene_fourfold_sites.py from 644 to 755 changing mode of build/scripts-2.7/find_in_sorted_file.py from 644 to 755 changing mode of build/scripts-2.7/div_snp_table_chr.py from 644 to 755 changing mode of build/scripts-2.7/bnMapper.py from 644 to 755 changing mode of build/scripts-2.7/bed_subtract_basewise.py from 644 to 755 changing mode of build/scripts-2.7/bed_rand_intersect.py from 644 to 755 changing mode of build/scripts-2.7/bed_merge_overlapping.py from 644 to 755 changing mode of build/scripts-2.7/bed_intersect_basewise.py from 644 to 755 changing mode of build/scripts-2.7/bed_intersect.py from 644 to 755 changing mode of build/scripts-2.7/bed_extend_to.py from 644 to 755 changing mode of build/scripts-2.7/bed_diff_basewise_summary.py from 644 to 755 changing mode of build/scripts-2.7/bed_coverage_by_interval.py from 644 to 755 changing mode of build/scripts-2.7/bed_coverage.py from 644 to 755 changing mode of build/scripts-2.7/bed_count_overlapping.py from 644 to 755 changing mode of build/scripts-2.7/bed_count_by_interval.py from 644 to 755 changing mode of build/scripts-2.7/bed_complement.py from 644 to 755 changing mode of build/scripts-2.7/bed_build_windows.py from 644 to 755 changing mode of build/scripts-2.7/bed_bigwig_profile.py from 644 to 755 changing mode of build/scripts-2.7/axt_to_maf.py from 644 to 755 changing mode of build/scripts-2.7/axt_to_lav.py from 644 to 755 changing mode of build/scripts-2.7/axt_to_fasta.py from 644 to 755 changing mode of build/scripts-2.7/axt_extract_ranges.py from 644 to 755 changing mode of build/scripts-2.7/align_print_template.py from 644 to 755 changing mode of build/scripts-2.7/aggregate_scores_in_intervals.py from 644 to 755 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py copying lib/psyco_full.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras copying lib/bx_extras/stats.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras copying lib/bx_extras/pyparsing.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras copying lib/bx_extras/pstat.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras copying lib/bx_extras/lrucache.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras copying lib/bx_extras/fpconst_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras copying lib/bx_extras/fpconst.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras copying lib/bx_extras/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/wiggle_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/wiggle.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/seqmapping_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/seqmapping.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/interval_index_file_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/interval_index_file.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/gene_reader.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/filter.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/bitset_utils.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/bitset_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/bitset_builders.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/binned_array_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/binned_array.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx copying lib/bx/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/tabular copying lib/bx/tabular/io.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/tabular copying lib/bx/tabular/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/tabular creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq copying lib/bx/seq/twobit_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq copying lib/bx/seq/twobit.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq copying lib/bx/seq/seq_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq copying lib/bx/seq/seq.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq copying lib/bx/seq/qdna_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq copying lib/bx/seq/qdna.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq copying lib/bx/seq/nib_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq copying lib/bx/seq/nib.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq copying lib/bx/seq/fasta_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq copying lib/bx/seq/fasta.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq copying lib/bx/seq/core.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq copying lib/bx/seq/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm copying lib/bx/pwm/pwm_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm copying lib/bx/pwm/pwm_score_positions.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm copying lib/bx/pwm/pwm_score_motifs.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm copying lib/bx/pwm/pwm_score_maf.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm copying lib/bx/pwm/position_weight_matrix.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm copying lib/bx/pwm/maf_select_motifs.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm copying lib/bx/pwm/bed_score_aligned_string.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm copying lib/bx/pwm/bed_score_aligned_pwm.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm copying lib/bx/pwm/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/phylo copying lib/bx/phylo/phast_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/phylo copying lib/bx/phylo/phast.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/phylo copying lib/bx/phylo/newick_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/phylo copying lib/bx/phylo/newick.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/phylo copying lib/bx/phylo/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/phylo creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif copying lib/bx/motif/pwm_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif copying lib/bx/motif/pwm.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif copying lib/bx/motif/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc copying lib/bx/misc/seeklzop_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc copying lib/bx/misc/seeklzop.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc copying lib/bx/misc/seekbzip2_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc copying lib/bx/misc/seekbzip2.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc copying lib/bx/misc/readlengths.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc copying lib/bx/misc/filecache_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc copying lib/bx/misc/filecache.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc copying lib/bx/misc/cdb_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc copying lib/bx/misc/cdb.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc copying lib/bx/misc/binary_file.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc copying lib/bx/misc/bgzf_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc copying lib/bx/misc/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intseq copying lib/bx/intseq/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intseq creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals copying lib/bx/intervals/random_intervals.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals copying lib/bx/intervals/io.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals copying lib/bx/intervals/intersection_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals copying lib/bx/intervals/cluster_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals copying lib/bx/intervals/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/cookbook copying lib/bx/cookbook/progress_bar.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/cookbook copying lib/bx/cookbook/doc_optparse.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/cookbook copying lib/bx/cookbook/attribute.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/cookbook copying lib/bx/cookbook/argparse.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/cookbook copying lib/bx/cookbook/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/cookbook creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi copying lib/bx/bbi/bigwig_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi copying lib/bx/bbi/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/arrays copying lib/bx/arrays/array_tree_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/arrays copying lib/bx/arrays/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/arrays creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align copying lib/bx/align/score_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align copying lib/bx/align/score.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align copying lib/bx/align/maf_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align copying lib/bx/align/maf.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align copying lib/bx/align/lav_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align copying lib/bx/align/lav.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align copying lib/bx/align/epo_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align copying lib/bx/align/epo.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align copying lib/bx/align/core.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align copying lib/bx/align/axt.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align copying lib/bx/align/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/logo copying lib/bx/motif/logo/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/logo creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/io copying lib/bx/motif/io/transfac_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/io copying lib/bx/motif/io/transfac.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/io copying lib/bx/motif/io/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/io creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations copying lib/bx/intervals/operations/subtract.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations copying lib/bx/intervals/operations/quicksect.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations copying lib/bx/intervals/operations/merge.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations copying lib/bx/intervals/operations/join.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations copying lib/bx/intervals/operations/intersect.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations copying lib/bx/intervals/operations/find_clusters.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations copying lib/bx/intervals/operations/coverage.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations copying lib/bx/intervals/operations/concat.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations copying lib/bx/intervals/operations/complement.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations copying lib/bx/intervals/operations/base_coverage.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations copying lib/bx/intervals/operations/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/tools copying lib/bx/align/tools/tile.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/tools copying lib/bx/align/tools/thread.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/tools copying lib/bx/align/tools/fuse.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/tools copying lib/bx/align/tools/chop.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/tools copying lib/bx/align/tools/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/tools creating /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask copying lib/bx/align/sitemask/sitemask_tests.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask copying lib/bx/align/sitemask/quality.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask copying lib/bx/align/sitemask/cpg.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask copying lib/bx/align/sitemask/core.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask copying lib/bx/align/sitemask/__init__.py -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask copying lib/bx/motif/logo/template.ps -> /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/logo Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma running build_ext skipping 'lib/bx/bitset.c' Cython extension (up-to-date) building 'bx.bitset' extension creating build/temp.linux-arm64-3.7 creating build/temp.linux-arm64-3.7/lib creating build/temp.linux-arm64-3.7/lib/bx creating build/temp.linux-arm64-3.7/src creating build/temp.linux-arm64-3.7/src/kent aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.7m -c lib/bx/bitset.c -o build/temp.linux-arm64-3.7/lib/bx/bitset.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.7m -c src/binBits.c -o build/temp.linux-arm64-3.7/src/binBits.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.7m -c src/kent/bits.c -o build/temp.linux-arm64-3.7/src/kent/bits.o src/kent/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $"; ^~~~~ aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.7m -c src/kent/common.c -o build/temp.linux-arm64-3.7/src/kent/common.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/bitset.o build/temp.linux-arm64-3.7/src/binBits.o build/temp.linux-arm64-3.7/src/kent/bits.o build/temp.linux-arm64-3.7/src/kent/common.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bitset.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/intervals/intersection.c' Cython extension (up-to-date) building 'bx.intervals.intersection' extension creating build/temp.linux-arm64-3.7/lib/bx/intervals aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c lib/bx/intervals/intersection.c -o build/temp.linux-arm64-3.7/lib/bx/intervals/intersection.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/intervals/intersection.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/intersection.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/align/_core.c' Cython extension (up-to-date) building 'bx.align._core' extension creating build/temp.linux-arm64-3.7/lib/bx/align aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c lib/bx/align/_core.c -o build/temp.linux-arm64-3.7/lib/bx/align/_core.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/align/_core.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/_core.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/seq/_nib.c' Cython extension (up-to-date) building 'bx.seq._nib' extension creating build/temp.linux-arm64-3.7/lib/bx/seq aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c lib/bx/seq/_nib.c -o build/temp.linux-arm64-3.7/lib/bx/seq/_nib.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/seq/_nib.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/_nib.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/seq/_twobit.c' Cython extension (up-to-date) building 'bx.seq._twobit' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c lib/bx/seq/_twobit.c -o build/temp.linux-arm64-3.7/lib/bx/seq/_twobit.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/seq/_twobit.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/_twobit.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/_seqmapping.c' Cython extension (up-to-date) building 'bx._seqmapping' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c lib/bx/_seqmapping.c -o build/temp.linux-arm64-3.7/lib/bx/_seqmapping.o lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_6translate’: lib/bx/_seqmapping.c:1750:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 52, __pyx_L1_error) ^~~~~~~~~ In file included from /usr/include/python3.7m/Python.h:147, from lib/bx/_seqmapping.c:4: /usr/include/python3.7m/abstract.h:500:17: note: declared here PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_8translate_list’: lib/bx/_seqmapping.c:1950:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] __pyx_t_7 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(0, 75, __pyx_L1_error) ^~~~~~~~~ In file included from /usr/include/python3.7m/Python.h:147, from lib/bx/_seqmapping.c:4: /usr/include/python3.7m/abstract.h:500:17: note: declared here PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping_6translate’: lib/bx/_seqmapping.c:2995:3: warning: ‘PyObject_AsReadBuffer’ is deprecated [-Wdeprecated-declarations] __pyx_t_1 = PyObject_AsReadBuffer(__pyx_v_src, ((void const **)(&__pyx_v_s_buf)), (&__pyx_v_s_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 132, __pyx_L1_error) ^~~~~~~~~ In file included from /usr/include/python3.7m/Python.h:147, from lib/bx/_seqmapping.c:4: /usr/include/python3.7m/abstract.h:489:17: note: declared here PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject *obj, ^~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c:3096:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 137, __pyx_L1_error) ^~~~~~~~~ In file included from /usr/include/python3.7m/Python.h:147, from lib/bx/_seqmapping.c:4: /usr/include/python3.7m/abstract.h:500:17: note: declared here PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, ^~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/_seqmapping.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/_seqmapping.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/misc/bgzf.c' Cython extension (up-to-date) building 'bx.misc.bgzf' extension creating build/temp.linux-arm64-3.7/lib/bx/misc creating build/temp.linux-arm64-3.7/src/samtools aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.7m -c lib/bx/misc/bgzf.c -o build/temp.linux-arm64-3.7/lib/bx/misc/bgzf.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.7m -c src/samtools/bgzf.c -o build/temp.linux-arm64-3.7/src/samtools/bgzf.o src/samtools/bgzf.c: In function ‘bgzf_close’: src/samtools/bgzf.c:603:8: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] int count, block_length = deflate_block(fp, 0); ^~~~~ src/samtools/bgzf.c: In function ‘bgzf_check_EOF’: src/samtools/bgzf.c:662:2: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(buf, 1, 28, fp->file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/misc/bgzf.o build/temp.linux-arm64-3.7/src/samtools/bgzf.o -lz -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/bgzf.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/intervals/cluster.c' Cython extension (up-to-date) building 'bx.intervals.cluster' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.7m -c lib/bx/intervals/cluster.c -o build/temp.linux-arm64-3.7/lib/bx/intervals/cluster.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.7m -c src/cluster.c -o build/temp.linux-arm64-3.7/src/cluster.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/intervals/cluster.o build/temp.linux-arm64-3.7/src/cluster.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/cluster.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/pwm/_position_weight_matrix.c' Cython extension (up-to-date) building 'bx.pwm._position_weight_matrix' extension creating build/temp.linux-arm64-3.7/lib/bx/pwm aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.7m -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.linux-arm64-3.7/lib/bx/pwm/_position_weight_matrix.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.7m -c src/pwm_utils.c -o build/temp.linux-arm64-3.7/src/pwm_utils.o src/pwm_utils.c: In function ‘main’: src/pwm_utils.c:11:27: warning: implicit declaration of function ‘strlen’ [-Wimplicit-function-declaration] int string_size = strlen(argv[1]); ^~~~~~ src/pwm_utils.c:11:27: warning: incompatible implicit declaration of built-in function ‘strlen’ src/pwm_utils.c:11:27: note: include ‘’ or provide a declaration of ‘strlen’ src/pwm_utils.c:5:1: +#include src/pwm_utils.c:11:27: int string_size = strlen(argv[1]); ^~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/pwm/_position_weight_matrix.o build/temp.linux-arm64-3.7/src/pwm_utils.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm/_position_weight_matrix.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/motif/_pwm.c' Cython extension (up-to-date) building 'bx.motif._pwm' extension creating build/temp.linux-arm64-3.7/lib/bx/motif aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c lib/bx/motif/_pwm.c -o build/temp.linux-arm64-3.7/lib/bx/motif/_pwm.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/motif/_pwm.c:611: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/motif/_pwm.c:611: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/motif/_pwm.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/_pwm.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/arrays/array_tree.c' Cython extension (up-to-date) building 'bx.arrays.array_tree' extension creating build/temp.linux-arm64-3.7/lib/bx/arrays aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c lib/bx/arrays/array_tree.c -o build/temp.linux-arm64-3.7/lib/bx/arrays/array_tree.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/arrays/array_tree.c:613: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/arrays/array_tree.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/arrays/array_tree.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/bbi/bpt_file.c' Cython extension (up-to-date) building 'bx.bbi.bpt_file' extension creating build/temp.linux-arm64-3.7/lib/bx/bbi aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c lib/bx/bbi/bpt_file.c -o build/temp.linux-arm64-3.7/lib/bx/bbi/bpt_file.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/bbi/bpt_file.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi/bpt_file.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/bbi/cirtree_file.c' Cython extension (up-to-date) building 'bx.bbi.cirtree_file' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c lib/bx/bbi/cirtree_file.c -o build/temp.linux-arm64-3.7/lib/bx/bbi/cirtree_file.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/bbi/cirtree_file.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi/cirtree_file.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/bbi/bbi_file.c' Cython extension (up-to-date) building 'bx.bbi.bbi_file' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c lib/bx/bbi/bbi_file.c -o build/temp.linux-arm64-3.7/lib/bx/bbi/bbi_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bbi_file.c:613: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/bbi/bbi_file.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi/bbi_file.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/bbi/bigwig_file.c' Cython extension (up-to-date) building 'bx.bbi.bigwig_file' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c lib/bx/bbi/bigwig_file.c -o build/temp.linux-arm64-3.7/lib/bx/bbi/bigwig_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bigwig_file.c:613: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: lib/bx/bbi/bigwig_file.c:3294:18: warning: ‘__pyx_v_val’ may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_t_2 = ((struct __pyx_vtabstruct_2bx_3bbi_11bigwig_file_BigWigBlockHandler *)__pyx_v_self->__pyx_base.__pyx_vtab)->handle_interval_value(__pyx_v_self, __pyx_v_s, __pyx_v_e, __pyx_v_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 75, __pyx_L1_error) ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/bx/bbi/bigwig_file.c:2651:7: warning: ‘__pyx_v_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] int __pyx_v_e; ^~~~~~~~~ lib/bx/bbi/bigwig_file.c:2650:7: warning: ‘__pyx_v_s’ may be used uninitialized in this function [-Wmaybe-uninitialized] int __pyx_v_s; ^~~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/bbi/bigwig_file.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi/bigwig_file.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/bbi/bigbed_file.c' Cython extension (up-to-date) building 'bx.bbi.bigbed_file' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c lib/bx/bbi/bigbed_file.c -o build/temp.linux-arm64-3.7/lib/bx/bbi/bigbed_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bigbed_file.c:613: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/bbi/bigbed_file.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi/bigbed_file.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/align/_epo.c' Cython extension (up-to-date) building 'bx.align._epo' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c lib/bx/align/_epo.c -o build/temp.linux-arm64-3.7/lib/bx/align/_epo.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/align/_epo.c:613: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/align/_epo.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/_epo.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/arrays/bed.c' Cython extension (up-to-date) building 'bx.arrays.bed' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c lib/bx/arrays/bed.c -o build/temp.linux-arm64-3.7/lib/bx/arrays/bed.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/arrays/bed.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/arrays/bed.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/arrays/wiggle.c' Cython extension (up-to-date) building 'bx.arrays.wiggle' extension aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c lib/bx/arrays/wiggle.c -o build/temp.linux-arm64-3.7/lib/bx/arrays/wiggle.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/arrays/wiggle.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/arrays/wiggle.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/align/sitemask/_cpg.c' Cython extension (up-to-date) building 'bx.align.sitemask._cpg' extension creating build/temp.linux-arm64-3.7/lib/bx/align/sitemask aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c lib/bx/align/sitemask/_cpg.c -o build/temp.linux-arm64-3.7/lib/bx/align/sitemask/_cpg.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c lib/bx/align/sitemask/find_cpg.c -o build/temp.linux-arm64-3.7/lib/bx/align/sitemask/find_cpg.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/align/sitemask/_cpg.o build/temp.linux-arm64-3.7/lib/bx/align/sitemask/find_cpg.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask/_cpg.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/intseq/ngramcount.c' Cython extension (up-to-date) building 'bx.intseq.ngramcount' extension creating build/temp.linux-arm64-3.7/lib/bx/intseq aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.7m -c lib/bx/intseq/ngramcount.c -o build/temp.linux-arm64-3.7/lib/bx/intseq/ngramcount.o aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/intseq/ngramcount.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intseq/ngramcount.cpython-37m-aarch64-linux-gnu.so skipping 'lib/bx/misc/_seekbzip2.c' Cython extension (up-to-date) building 'bx.misc._seekbzip2' extension creating build/temp.linux-arm64-3.7/src/bunzip aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.7m -c lib/bx/misc/_seekbzip2.c -o build/temp.linux-arm64-3.7/lib/bx/misc/_seekbzip2.o aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.7m -c src/bunzip/micro-bunzip.c -o build/temp.linux-arm64-3.7/src/bunzip/micro-bunzip.o src/bunzip/micro-bunzip.c: In function ‘start_bunzip’: src/bunzip/micro-bunzip.c:629:12: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] bd->inbuf=inbuf; ^ src/bunzip/micro-bunzip.c: In function ‘get_next_block’: src/bunzip/micro-bunzip.c:129:51: warning: ‘limit’ may be used uninitialized in this function [-Wmaybe-uninitialized] int dbufCount,nextSym,dbufSize,groupCount,*base,*limit,selector, ^~~~~ src/bunzip/micro-bunzip.c:129:45: warning: ‘base’ may be used uninitialized in this function [-Wmaybe-uninitialized] int dbufCount,nextSym,dbufSize,groupCount,*base,*limit,selector, ^~~~ src/bunzip/micro-bunzip.c:128:21: warning: ‘hufGroup’ may be used uninitialized in this function [-Wmaybe-uninitialized] struct group_data *hufGroup; ^~~~~~~~ aarch64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/python-bx-0.8.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.7/lib/bx/misc/_seekbzip2.o build/temp.linux-arm64-3.7/src/bunzip/micro-bunzip.o -o /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/_seekbzip2.cpython-37m-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.7 copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-3.7 copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-3.7 copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-3.7 copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-3.7 copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-3.7 copying and adjusting scripts/tfloc_summary.py -> build/scripts-3.7 copying and adjusting scripts/table_filter.py -> build/scripts-3.7 copying and adjusting scripts/table_add_column.py -> build/scripts-3.7 copying and adjusting scripts/random_lines.py -> build/scripts-3.7 copying and adjusting scripts/qv_to_bqv.py -> build/scripts-3.7 copying and adjusting scripts/pretty_table.py -> build/scripts-3.7 copying and adjusting scripts/prefix_lines.py -> build/scripts-3.7 copying and adjusting scripts/out_to_chain.py -> build/scripts-3.7 copying and adjusting scripts/one_field_per_line.py -> build/scripts-3.7 copying and adjusting scripts/nib_length.py -> build/scripts-3.7 copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-3.7 copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-3.7 copying and adjusting scripts/mask_quality.py -> build/scripts-3.7 copying and adjusting scripts/maf_word_frequency.py -> build/scripts-3.7 copying and adjusting scripts/maf_truncate.py -> build/scripts-3.7 copying and adjusting scripts/maf_translate_chars.py -> build/scripts-3.7 copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-3.7 copying and adjusting scripts/maf_to_fasta.py -> build/scripts-3.7 copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-3.7 copying and adjusting scripts/maf_to_axt.py -> build/scripts-3.7 copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-3.7 copying and adjusting scripts/maf_tile_2.py -> build/scripts-3.7 copying and adjusting scripts/maf_tile.py -> build/scripts-3.7 copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-3.7 copying and adjusting scripts/maf_split_by_src.py -> build/scripts-3.7 copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-3.7 copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-3.7 copying and adjusting scripts/maf_select.py -> build/scripts-3.7 copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-3.7 copying and adjusting scripts/maf_randomize.py -> build/scripts-3.7 copying and adjusting scripts/maf_print_scores.py -> build/scripts-3.7 copying and adjusting scripts/maf_print_chroms.py -> build/scripts-3.7 copying and adjusting scripts/maf_percent_identity.py -> build/scripts-3.7 copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-3.7 copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-3.7 copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-3.7 copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-3.7 copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-3.7 copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-3.7 copying and adjusting scripts/maf_gc_content.py -> build/scripts-3.7 copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-3.7 copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-3.7 copying and adjusting scripts/maf_filter.py -> build/scripts-3.7 copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-3.7 copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-3.7 copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-3.7 copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-3.7 copying and adjusting scripts/maf_div_sites.py -> build/scripts-3.7 copying and adjusting scripts/maf_covered_regions.py -> build/scripts-3.7 copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-3.7 copying and adjusting scripts/maf_count.py -> build/scripts-3.7 copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-3.7 copying and adjusting scripts/maf_col_counts.py -> build/scripts-3.7 copying and adjusting scripts/maf_chunk.py -> build/scripts-3.7 copying and adjusting scripts/maf_chop.py -> build/scripts-3.7 copying and adjusting scripts/maf_build_index.py -> build/scripts-3.7 copying and adjusting scripts/mMK_bitset.py -> build/scripts-3.7 copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-3.7 copying and adjusting scripts/line_select.py -> build/scripts-3.7 copying and adjusting scripts/lav_to_maf.py -> build/scripts-3.7 copying and adjusting scripts/lav_to_axt.py -> build/scripts-3.7 copying and adjusting scripts/interval_join.py -> build/scripts-3.7 copying and adjusting scripts/interval_count_intersections.py -> build/scripts-3.7 copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-3.7 copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-3.7 copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-3.7 copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-3.7 copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-3.7 copying and adjusting scripts/bnMapper.py -> build/scripts-3.7 copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-3.7 copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-3.7 copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-3.7 copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-3.7 copying and adjusting scripts/bed_intersect.py -> build/scripts-3.7 copying and adjusting scripts/bed_extend_to.py -> build/scripts-3.7 copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-3.7 copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-3.7 copying and adjusting scripts/bed_coverage.py -> build/scripts-3.7 copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-3.7 copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-3.7 copying and adjusting scripts/bed_complement.py -> build/scripts-3.7 copying and adjusting scripts/bed_build_windows.py -> build/scripts-3.7 copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-3.7 copying and adjusting scripts/axt_to_maf.py -> build/scripts-3.7 copying and adjusting scripts/axt_to_lav.py -> build/scripts-3.7 copying and adjusting scripts/axt_to_fasta.py -> build/scripts-3.7 copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-3.7 copying and adjusting scripts/align_print_template.py -> build/scripts-3.7 copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-3.7 changing mode of build/scripts-3.7/wiggle_to_simple.py from 644 to 755 changing mode of build/scripts-3.7/wiggle_to_chr_binned_array.py from 644 to 755 changing mode of build/scripts-3.7/wiggle_to_binned_array.py from 644 to 755 changing mode of build/scripts-3.7/wiggle_to_array_tree.py from 644 to 755 changing mode of build/scripts-3.7/ucsc_gene_table_to_intervals.py from 644 to 755 changing mode of build/scripts-3.7/tfloc_summary.py from 644 to 755 changing mode of build/scripts-3.7/table_filter.py from 644 to 755 changing mode of build/scripts-3.7/table_add_column.py from 644 to 755 changing mode of build/scripts-3.7/random_lines.py from 644 to 755 changing mode of build/scripts-3.7/qv_to_bqv.py from 644 to 755 changing mode of build/scripts-3.7/pretty_table.py from 644 to 755 changing mode of build/scripts-3.7/prefix_lines.py from 644 to 755 changing mode of build/scripts-3.7/out_to_chain.py from 644 to 755 changing mode of build/scripts-3.7/one_field_per_line.py from 644 to 755 changing mode of build/scripts-3.7/nib_length.py from 644 to 755 changing mode of build/scripts-3.7/nib_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.7/nib_chrom_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.7/mask_quality.py from 644 to 755 changing mode of build/scripts-3.7/maf_word_frequency.py from 644 to 755 changing mode of build/scripts-3.7/maf_truncate.py from 644 to 755 changing mode of build/scripts-3.7/maf_translate_chars.py from 644 to 755 changing mode of build/scripts-3.7/maf_to_int_seqs.py from 644 to 755 changing mode of build/scripts-3.7/maf_to_fasta.py from 644 to 755 changing mode of build/scripts-3.7/maf_to_concat_fasta.py from 644 to 755 changing mode of build/scripts-3.7/maf_to_axt.py from 644 to 755 changing mode of build/scripts-3.7/maf_tile_2bit.py from 644 to 755 changing mode of build/scripts-3.7/maf_tile_2.py from 644 to 755 changing mode of build/scripts-3.7/maf_tile.py from 644 to 755 changing mode of build/scripts-3.7/maf_thread_for_species.py from 644 to 755 changing mode of build/scripts-3.7/maf_split_by_src.py from 644 to 755 changing mode of build/scripts-3.7/maf_species_in_all_files.py from 644 to 755 changing mode of build/scripts-3.7/maf_shuffle_columns.py from 644 to 755 changing mode of build/scripts-3.7/maf_select.py from 644 to 755 changing mode of build/scripts-3.7/maf_region_coverage_by_src.py from 644 to 755 changing mode of build/scripts-3.7/maf_randomize.py from 644 to 755 changing mode of build/scripts-3.7/maf_print_scores.py from 644 to 755 changing mode of build/scripts-3.7/maf_print_chroms.py from 644 to 755 changing mode of build/scripts-3.7/maf_percent_identity.py from 644 to 755 changing mode of build/scripts-3.7/maf_percent_columns_matching.py from 644 to 755 changing mode of build/scripts-3.7/maf_mean_length_ungapped_piece.py from 644 to 755 changing mode of build/scripts-3.7/maf_mask_cpg.py from 644 to 755 changing mode of build/scripts-3.7/maf_mapping_word_frequency.py from 644 to 755 changing mode of build/scripts-3.7/maf_limit_to_species.py from 644 to 755 changing mode of build/scripts-3.7/maf_interval_alignibility.py from 644 to 755 changing mode of build/scripts-3.7/maf_gc_content.py from 644 to 755 changing mode of build/scripts-3.7/maf_gap_frequency.py from 644 to 755 changing mode of build/scripts-3.7/maf_filter_max_wc.py from 644 to 755 changing mode of build/scripts-3.7/maf_filter.py from 644 to 755 changing mode of build/scripts-3.7/maf_extract_ranges_indexed.py from 644 to 755 changing mode of build/scripts-3.7/maf_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.7/maf_extract_chrom_ranges.py from 644 to 755 changing mode of build/scripts-3.7/maf_drop_overlapping.py from 644 to 755 changing mode of build/scripts-3.7/maf_div_sites.py from 644 to 755 changing mode of build/scripts-3.7/maf_covered_regions.py from 644 to 755 changing mode of build/scripts-3.7/maf_covered_ranges.py from 644 to 755 changing mode of build/scripts-3.7/maf_count.py from 644 to 755 changing mode of build/scripts-3.7/maf_col_counts_all.py from 644 to 755 changing mode of build/scripts-3.7/maf_col_counts.py from 644 to 755 changing mode of build/scripts-3.7/maf_chunk.py from 644 to 755 changing mode of build/scripts-3.7/maf_chop.py from 644 to 755 changing mode of build/scripts-3.7/maf_build_index.py from 644 to 755 changing mode of build/scripts-3.7/mMK_bitset.py from 644 to 755 changing mode of build/scripts-3.7/lzop_build_offset_table.py from 644 to 755 changing mode of build/scripts-3.7/line_select.py from 644 to 755 changing mode of build/scripts-3.7/lav_to_maf.py from 644 to 755 changing mode of build/scripts-3.7/lav_to_axt.py from 644 to 755 changing mode of build/scripts-3.7/interval_join.py from 644 to 755 changing mode of build/scripts-3.7/interval_count_intersections.py from 644 to 755 changing mode of build/scripts-3.7/int_seqs_to_char_strings.py from 644 to 755 changing mode of build/scripts-3.7/get_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.7/gene_fourfold_sites.py from 644 to 755 changing mode of build/scripts-3.7/find_in_sorted_file.py from 644 to 755 changing mode of build/scripts-3.7/div_snp_table_chr.py from 644 to 755 changing mode of build/scripts-3.7/bnMapper.py from 644 to 755 changing mode of build/scripts-3.7/bed_subtract_basewise.py from 644 to 755 changing mode of build/scripts-3.7/bed_rand_intersect.py from 644 to 755 changing mode of build/scripts-3.7/bed_merge_overlapping.py from 644 to 755 changing mode of build/scripts-3.7/bed_intersect_basewise.py from 644 to 755 changing mode of build/scripts-3.7/bed_intersect.py from 644 to 755 changing mode of build/scripts-3.7/bed_extend_to.py from 644 to 755 changing mode of build/scripts-3.7/bed_diff_basewise_summary.py from 644 to 755 changing mode of build/scripts-3.7/bed_coverage_by_interval.py from 644 to 755 changing mode of build/scripts-3.7/bed_coverage.py from 644 to 755 changing mode of build/scripts-3.7/bed_count_overlapping.py from 644 to 755 changing mode of build/scripts-3.7/bed_count_by_interval.py from 644 to 755 changing mode of build/scripts-3.7/bed_complement.py from 644 to 755 changing mode of build/scripts-3.7/bed_build_windows.py from 644 to 755 changing mode of build/scripts-3.7/bed_bigwig_profile.py from 644 to 755 changing mode of build/scripts-3.7/axt_to_maf.py from 644 to 755 changing mode of build/scripts-3.7/axt_to_lav.py from 644 to 755 changing mode of build/scripts-3.7/axt_to_fasta.py from 644 to 755 changing mode of build/scripts-3.7/axt_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.7/align_print_template.py from 644 to 755 changing mode of build/scripts-3.7/aggregate_scores_in_intervals.py from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-bx-0.8.2' # skipped make[1]: Leaving directory '/build/python-bx-0.8.2' fakeroot debian/rules binary dh binary --with python2,python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /build/python-bx-0.8.2/debian/python-bx running install running build running build_py running build_ext skipping 'lib/bx/bitset.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/intersection.c' Cython extension (up-to-date) skipping 'lib/bx/align/_core.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_nib.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_twobit.c' Cython extension (up-to-date) skipping 'lib/bx/_seqmapping.c' Cython extension (up-to-date) skipping 'lib/bx/misc/bgzf.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/cluster.c' Cython extension (up-to-date) skipping 'lib/bx/pwm/_position_weight_matrix.c' Cython extension (up-to-date) skipping 'lib/bx/motif/_pwm.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/array_tree.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bpt_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/cirtree_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bbi_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigwig_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigbed_file.c' Cython extension (up-to-date) skipping 'lib/bx/align/_epo.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/bed.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/wiggle.c' Cython extension (up-to-date) skipping 'lib/bx/align/sitemask/_cpg.c' Cython extension (up-to-date) skipping 'lib/bx/intseq/ngramcount.c' Cython extension (up-to-date) skipping 'lib/bx/misc/_seekbzip2.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/python-bx-0.8.2/debian/python-bx/usr/lib creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7 creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/_seqmapping.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bitset.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/_epo.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/_core.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask/_cpg.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask/core.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask/cpg.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask/quality.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/sitemask/sitemask_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/sitemask creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/tools copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/tools/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/tools copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/tools/chop.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/tools copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/tools/fuse.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/tools copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/tools/thread.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/tools copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/tools/tile.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/tools copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/axt.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/core.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/epo.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/epo_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/lav.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/lav_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/maf.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/maf_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/score.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/align/score_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/arrays copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/arrays/wiggle.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/arrays copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/arrays/bed.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/arrays copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/arrays/array_tree.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/arrays copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/arrays/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/arrays copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/arrays/array_tree_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/arrays creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi/bigbed_file.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi/bigwig_file.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi/bbi_file.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi/cirtree_file.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi/bpt_file.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bbi/bigwig_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bbi creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/cookbook copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/cookbook/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/cookbook copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/cookbook/argparse.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/cookbook copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/cookbook/attribute.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/cookbook copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/cookbook/doc_optparse.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/cookbook copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/cookbook/progress_bar.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/cookbook creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/cluster.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/intersection.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations/base_coverage.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations/complement.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations/concat.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations/coverage.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations/find_clusters.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations/intersect.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations/join.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations/merge.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations/quicksect.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/operations/subtract.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/cluster_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/intersection_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/io.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intervals/random_intervals.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intseq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intseq/ngramcount.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intseq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/intseq/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intseq creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/_seekbzip2.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/bgzf.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/bgzf_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/binary_file.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/cdb.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/cdb_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/filecache.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/filecache_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/readlengths.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/seekbzip2.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/seekbzip2_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/seeklzop.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/misc/seeklzop_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/_pwm.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/io copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/io/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/io copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/io/transfac.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/io copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/io/transfac_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/io creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/logo copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/logo/template.ps -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/logo copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/logo/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/logo copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/pwm.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/motif/pwm_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/phylo copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/phylo/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/phylo copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/phylo/newick.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/phylo copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/phylo/newick_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/phylo copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/phylo/phast.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/phylo copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/phylo/phast_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/phylo creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm/_position_weight_matrix.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm/bed_score_aligned_pwm.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm/bed_score_aligned_string.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm/maf_select_motifs.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm/position_weight_matrix.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm/pwm_score_maf.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm/pwm_score_motifs.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm/pwm_score_positions.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/pwm/pwm_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/_twobit.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/_nib.so -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/core.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/fasta.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/fasta_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/nib.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/nib_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/qdna.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/qdna_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/seq.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/seq_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/twobit.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seq/twobit_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/tabular copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/tabular/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/tabular copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/tabular/io.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/tabular copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/binned_array.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/binned_array_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bitset_builders.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bitset_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/bitset_utils.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/filter.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/gene_reader.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/interval_index_file.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/interval_index_file_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seqmapping.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/seqmapping_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/wiggle.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx/wiggle_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx creating /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras/__init__.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras/fpconst.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras/fpconst_tests.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras/lrucache.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras/pstat.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras/pyparsing.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/bx_extras/stats.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython2_2.7/build/psyco_full.py -> /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/sitemask/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/sitemask/core.py to core.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/sitemask/cpg.py to cpg.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/sitemask/quality.py to quality.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/sitemask/sitemask_tests.py to sitemask_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/tools/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/tools/chop.py to chop.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/tools/fuse.py to fuse.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/tools/thread.py to thread.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/tools/tile.py to tile.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/axt.py to axt.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/core.py to core.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/epo.py to epo.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/epo_tests.py to epo_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/lav.py to lav.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/lav_tests.py to lav_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/maf.py to maf.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/maf_tests.py to maf_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/score.py to score.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/align/score_tests.py to score_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/arrays/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/arrays/array_tree_tests.py to array_tree_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bbi/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bbi/bigwig_tests.py to bigwig_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/cookbook/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/cookbook/argparse.py to argparse.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/cookbook/attribute.py to attribute.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/cookbook/doc_optparse.py to doc_optparse.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/cookbook/progress_bar.py to progress_bar.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations/base_coverage.py to base_coverage.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations/complement.py to complement.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations/concat.py to concat.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations/coverage.py to coverage.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations/find_clusters.py to find_clusters.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations/intersect.py to intersect.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations/join.py to join.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations/merge.py to merge.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations/quicksect.py to quicksect.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/operations/subtract.py to subtract.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/cluster_tests.py to cluster_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/intersection_tests.py to intersection_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/io.py to io.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intervals/random_intervals.py to random_intervals.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/intseq/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc/bgzf_tests.py to bgzf_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc/binary_file.py to binary_file.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc/cdb.py to cdb.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc/cdb_tests.py to cdb_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc/filecache.py to filecache.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc/filecache_tests.py to filecache_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc/readlengths.py to readlengths.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc/seekbzip2.py to seekbzip2.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc/seekbzip2_tests.py to seekbzip2_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc/seeklzop.py to seeklzop.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/misc/seeklzop_tests.py to seeklzop_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/io/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/io/transfac.py to transfac.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/io/transfac_tests.py to transfac_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/logo/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/pwm.py to pwm.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/motif/pwm_tests.py to pwm_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/phylo/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/phylo/newick.py to newick.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/phylo/newick_tests.py to newick_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/phylo/phast.py to phast.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/phylo/phast_tests.py to phast_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm/bed_score_aligned_pwm.py to bed_score_aligned_pwm.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm/bed_score_aligned_string.py to bed_score_aligned_string.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm/maf_select_motifs.py to maf_select_motifs.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm/position_weight_matrix.py to position_weight_matrix.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm/pwm_score_maf.py to pwm_score_maf.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm/pwm_score_motifs.py to pwm_score_motifs.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm/pwm_score_positions.py to pwm_score_positions.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/pwm/pwm_tests.py to pwm_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq/core.py to core.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq/fasta.py to fasta.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq/fasta_tests.py to fasta_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq/nib.py to nib.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq/nib_tests.py to nib_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq/qdna.py to qdna.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq/qdna_tests.py to qdna_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq/seq.py to seq.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq/seq_tests.py to seq_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq/twobit.py to twobit.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seq/twobit_tests.py to twobit_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/tabular/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/tabular/io.py to io.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/binned_array.py to binned_array.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/binned_array_tests.py to binned_array_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bitset_builders.py to bitset_builders.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bitset_tests.py to bitset_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/bitset_utils.py to bitset_utils.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/filter.py to filter.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/gene_reader.py to gene_reader.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/interval_index_file.py to interval_index_file.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/interval_index_file_tests.py to interval_index_file_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seqmapping.py to seqmapping.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/seqmapping_tests.py to seqmapping_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/wiggle.py to wiggle.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx/wiggle_tests.py to wiggle_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras/__init__.py to __init__.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras/fpconst.py to fpconst.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras/fpconst_tests.py to fpconst_tests.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras/lrucache.py to lrucache.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras/pstat.py to pstat.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras/pyparsing.py to pyparsing.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_extras/stats.py to stats.pyc byte-compiling /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/psyco_full.py to psyco_full.pyc running install_egg_info running egg_info creating lib/bx_python.egg-info writing requirements to lib/bx_python.egg-info/requires.txt writing lib/bx_python.egg-info/PKG-INFO writing top-level names to lib/bx_python.egg-info/top_level.txt writing dependency_links to lib/bx_python.egg-info/dependency_links.txt writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'distribute_setup.py' writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' Copying lib/bx_python.egg-info to /build/python-bx-0.8.2/debian/python-bx/usr/lib/python2.7/dist-packages/bx_python-0.8.2.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-2.7/aggregate_scores_in_intervals.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/align_print_template.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/axt_extract_ranges.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/axt_to_fasta.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/axt_to_lav.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/axt_to_maf.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_bigwig_profile.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_build_windows.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_complement.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_count_by_interval.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_count_overlapping.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_coverage.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_coverage_by_interval.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_diff_basewise_summary.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_extend_to.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_intersect.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_intersect_basewise.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_merge_overlapping.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_rand_intersect.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bed_subtract_basewise.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/bnMapper.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/div_snp_table_chr.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/find_in_sorted_file.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/gene_fourfold_sites.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/get_scores_in_intervals.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/int_seqs_to_char_strings.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/interval_count_intersections.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/interval_join.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/lav_to_axt.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/lav_to_maf.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/line_select.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/lzop_build_offset_table.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/mMK_bitset.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_build_index.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_chop.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_chunk.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_col_counts.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_col_counts_all.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_count.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_covered_ranges.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_covered_regions.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_div_sites.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_drop_overlapping.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_extract_chrom_ranges.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_extract_ranges.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_extract_ranges_indexed.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_filter.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_filter_max_wc.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_gap_frequency.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_gc_content.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_interval_alignibility.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_limit_to_species.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_mapping_word_frequency.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_mask_cpg.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_mean_length_ungapped_piece.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_percent_columns_matching.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_percent_identity.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_print_chroms.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_print_scores.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_randomize.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_region_coverage_by_src.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_select.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_shuffle_columns.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_species_in_all_files.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_split_by_src.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_thread_for_species.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_tile.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_tile_2.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_tile_2bit.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_to_axt.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_to_concat_fasta.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_to_fasta.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_to_int_seqs.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_translate_chars.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_truncate.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/maf_word_frequency.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/mask_quality.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/nib_chrom_intervals_to_fasta.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/nib_intervals_to_fasta.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/nib_length.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/one_field_per_line.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/out_to_chain.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/prefix_lines.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/pretty_table.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/qv_to_bqv.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/random_lines.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/table_add_column.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/table_filter.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/tfloc_summary.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/ucsc_gene_table_to_intervals.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/wiggle_to_array_tree.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/wiggle_to_binned_array.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/wiggle_to_chr_binned_array.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin copying build/scripts-2.7/wiggle_to_simple.py -> /build/python-bx-0.8.2/debian/python-bx/usr/bin changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/aggregate_scores_in_intervals.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/align_print_template.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/axt_extract_ranges.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/axt_to_fasta.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/axt_to_lav.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/axt_to_maf.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_bigwig_profile.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_build_windows.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_complement.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_count_by_interval.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_count_overlapping.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_coverage.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_coverage_by_interval.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_diff_basewise_summary.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_extend_to.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_intersect.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_intersect_basewise.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_merge_overlapping.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_rand_intersect.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bed_subtract_basewise.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/bnMapper.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/div_snp_table_chr.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/find_in_sorted_file.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/gene_fourfold_sites.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/get_scores_in_intervals.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/int_seqs_to_char_strings.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/interval_count_intersections.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/interval_join.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/lav_to_axt.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/lav_to_maf.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/line_select.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/lzop_build_offset_table.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/mMK_bitset.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_build_index.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_chop.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_chunk.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_col_counts.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_col_counts_all.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_count.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_covered_ranges.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_covered_regions.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_div_sites.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_drop_overlapping.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_extract_chrom_ranges.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_extract_ranges.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_extract_ranges_indexed.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_filter.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_filter_max_wc.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_gap_frequency.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_gc_content.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_interval_alignibility.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_limit_to_species.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_mapping_word_frequency.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_mask_cpg.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_mean_length_ungapped_piece.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_percent_columns_matching.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_percent_identity.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_print_chroms.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_print_scores.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_randomize.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_region_coverage_by_src.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_select.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_shuffle_columns.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_species_in_all_files.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_split_by_src.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_thread_for_species.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_tile.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_tile_2.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_tile_2bit.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_to_axt.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_to_concat_fasta.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_to_fasta.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_to_int_seqs.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_translate_chars.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_truncate.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/maf_word_frequency.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/mask_quality.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/nib_chrom_intervals_to_fasta.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/nib_intervals_to_fasta.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/nib_length.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/one_field_per_line.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/out_to_chain.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/prefix_lines.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/pretty_table.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/qv_to_bqv.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/random_lines.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/table_add_column.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/table_filter.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/tfloc_summary.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/ucsc_gene_table_to_intervals.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/wiggle_to_array_tree.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/wiggle_to_binned_array.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/wiggle_to_chr_binned_array.py to 755 changing mode of /build/python-bx-0.8.2/debian/python-bx/usr/bin/wiggle_to_simple.py to 755 I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-bx-0.8.2/debian/python3-bx running install running build running build_py running build_ext skipping 'lib/bx/bitset.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/intersection.c' Cython extension (up-to-date) skipping 'lib/bx/align/_core.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_nib.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_twobit.c' Cython extension (up-to-date) skipping 'lib/bx/_seqmapping.c' Cython extension (up-to-date) skipping 'lib/bx/misc/bgzf.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/cluster.c' Cython extension (up-to-date) skipping 'lib/bx/pwm/_position_weight_matrix.c' Cython extension (up-to-date) skipping 'lib/bx/motif/_pwm.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/array_tree.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bpt_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/cirtree_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bbi_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigwig_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigbed_file.c' Cython extension (up-to-date) skipping 'lib/bx/align/_epo.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/bed.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/wiggle.c' Cython extension (up-to-date) skipping 'lib/bx/align/sitemask/_cpg.c' Cython extension (up-to-date) skipping 'lib/bx/intseq/ngramcount.c' Cython extension (up-to-date) skipping 'lib/bx/misc/_seekbzip2.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7 creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/_seqmapping.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bitset.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/_epo.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/_core.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask/_cpg.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask/core.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask/cpg.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask/quality.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/sitemask/sitemask_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/sitemask creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/tools copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/tools/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/tools copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/tools/chop.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/tools copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/tools/fuse.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/tools copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/tools/thread.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/tools copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/tools/tile.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/tools copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/axt.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/core.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/epo.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/epo_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/lav.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/lav_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/maf.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/maf_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/score.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/align/score_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/arrays copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/arrays/wiggle.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/arrays copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/arrays/bed.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/arrays copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/arrays/array_tree.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/arrays copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/arrays/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/arrays copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/arrays/array_tree_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/arrays creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi/bigbed_file.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi/bigwig_file.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi/bbi_file.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi/cirtree_file.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi/bpt_file.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bbi copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bbi/bigwig_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bbi creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/cookbook copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/cookbook/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/cookbook copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/cookbook/argparse.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/cookbook copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/cookbook/attribute.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/cookbook copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/cookbook/doc_optparse.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/cookbook copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/cookbook/progress_bar.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/cookbook creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/cluster.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/intersection.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations/base_coverage.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations/complement.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations/concat.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations/coverage.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations/find_clusters.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations/intersect.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations/join.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations/merge.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations/quicksect.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/operations/subtract.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/cluster_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/intersection_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/io.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intervals/random_intervals.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intseq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intseq/ngramcount.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intseq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/intseq/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intseq creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/_seekbzip2.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/bgzf.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/bgzf_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/binary_file.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/cdb.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/cdb_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/filecache.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/filecache_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/readlengths.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/seekbzip2.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/seekbzip2_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/seeklzop.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/misc/seeklzop_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/_pwm.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/io copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/io/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/io copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/io/transfac.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/io copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/io/transfac_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/io creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/logo copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/logo/template.ps -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/logo copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/logo/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/logo copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/pwm.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/motif/pwm_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/phylo copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/phylo/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/phylo copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/phylo/newick.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/phylo copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/phylo/newick_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/phylo copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/phylo/phast.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/phylo copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/phylo/phast_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/phylo creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm/_position_weight_matrix.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm/bed_score_aligned_pwm.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm/bed_score_aligned_string.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm/maf_select_motifs.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm/position_weight_matrix.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm/pwm_score_maf.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm/pwm_score_motifs.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm/pwm_score_positions.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/pwm/pwm_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/_twobit.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/_nib.cpython-37m-aarch64-linux-gnu.so -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/core.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/fasta.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/fasta_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/nib.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/nib_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/qdna.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/qdna_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/seq.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/seq_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/twobit.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seq/twobit_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/tabular copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/tabular/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/tabular copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/tabular/io.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/tabular copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/binned_array.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/binned_array_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bitset_builders.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bitset_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/bitset_utils.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/filter.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/gene_reader.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/interval_index_file.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/interval_index_file_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seqmapping.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/seqmapping_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/wiggle.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx/wiggle_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx creating /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras/__init__.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras/fpconst.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras/fpconst_tests.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras/lrucache.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras/pstat.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras/pyparsing.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/bx_extras/stats.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras copying /build/python-bx-0.8.2/.pybuild/cpython3_3.7/build/psyco_full.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/sitemask/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/sitemask/core.py to core.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/sitemask/cpg.py to cpg.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/sitemask/quality.py to quality.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/sitemask/sitemask_tests.py to sitemask_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/tools/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/tools/chop.py to chop.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/tools/fuse.py to fuse.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/tools/thread.py to thread.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/tools/tile.py to tile.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/axt.py to axt.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/core.py to core.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/epo.py to epo.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/epo_tests.py to epo_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/lav.py to lav.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/lav_tests.py to lav_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/maf.py to maf.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/maf_tests.py to maf_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/score.py to score.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/align/score_tests.py to score_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/arrays/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/arrays/array_tree_tests.py to array_tree_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bbi/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bbi/bigwig_tests.py to bigwig_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/cookbook/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/cookbook/argparse.py to argparse.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/cookbook/attribute.py to attribute.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/cookbook/doc_optparse.py to doc_optparse.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/cookbook/progress_bar.py to progress_bar.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations/base_coverage.py to base_coverage.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations/complement.py to complement.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations/concat.py to concat.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations/coverage.py to coverage.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations/find_clusters.py to find_clusters.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations/intersect.py to intersect.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations/join.py to join.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations/merge.py to merge.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations/quicksect.py to quicksect.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/operations/subtract.py to subtract.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/cluster_tests.py to cluster_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/intersection_tests.py to intersection_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/io.py to io.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intervals/random_intervals.py to random_intervals.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/intseq/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc/bgzf_tests.py to bgzf_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc/binary_file.py to binary_file.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc/cdb.py to cdb.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc/cdb_tests.py to cdb_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc/filecache.py to filecache.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc/filecache_tests.py to filecache_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc/readlengths.py to readlengths.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc/seekbzip2.py to seekbzip2.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc/seekbzip2_tests.py to seekbzip2_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc/seeklzop.py to seeklzop.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/misc/seeklzop_tests.py to seeklzop_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/io/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/io/transfac.py to transfac.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/io/transfac_tests.py to transfac_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/logo/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/pwm.py to pwm.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/motif/pwm_tests.py to pwm_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/phylo/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/phylo/newick.py to newick.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/phylo/newick_tests.py to newick_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/phylo/phast.py to phast.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/phylo/phast_tests.py to phast_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm/bed_score_aligned_pwm.py to bed_score_aligned_pwm.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm/bed_score_aligned_string.py to bed_score_aligned_string.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm/maf_select_motifs.py to maf_select_motifs.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm/position_weight_matrix.py to position_weight_matrix.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm/pwm_score_maf.py to pwm_score_maf.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm/pwm_score_motifs.py to pwm_score_motifs.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm/pwm_score_positions.py to pwm_score_positions.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/pwm/pwm_tests.py to pwm_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq/core.py to core.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq/fasta.py to fasta.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq/fasta_tests.py to fasta_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq/nib.py to nib.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq/nib_tests.py to nib_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq/qdna.py to qdna.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq/qdna_tests.py to qdna_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq/seq.py to seq.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq/seq_tests.py to seq_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq/twobit.py to twobit.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seq/twobit_tests.py to twobit_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/tabular/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/tabular/io.py to io.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/binned_array.py to binned_array.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/binned_array_tests.py to binned_array_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bitset_builders.py to bitset_builders.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bitset_tests.py to bitset_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/bitset_utils.py to bitset_utils.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/filter.py to filter.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/gene_reader.py to gene_reader.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/interval_index_file.py to interval_index_file.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/interval_index_file_tests.py to interval_index_file_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seqmapping.py to seqmapping.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/seqmapping_tests.py to seqmapping_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/wiggle.py to wiggle.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx/wiggle_tests.py to wiggle_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras/fpconst.py to fpconst.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras/fpconst_tests.py to fpconst_tests.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras/lrucache.py to lrucache.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras/pstat.py to pstat.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras/pyparsing.py to pyparsing.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_extras/stats.py to stats.cpython-37.pyc byte-compiling /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/psyco_full.py to psyco_full.cpython-37.pyc running install_egg_info running egg_info writing lib/bx_python.egg-info/PKG-INFO writing dependency_links to lib/bx_python.egg-info/dependency_links.txt writing requirements to lib/bx_python.egg-info/requires.txt writing top-level names to lib/bx_python.egg-info/top_level.txt reading manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'distribute_setup.py' writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' Copying lib/bx_python.egg-info to /build/python-bx-0.8.2/debian/python3-bx/usr/lib/python3.7/dist-packages/bx_python-0.8.2.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.7/aggregate_scores_in_intervals.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/align_print_template.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/axt_extract_ranges.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/axt_to_fasta.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/axt_to_lav.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/axt_to_maf.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_bigwig_profile.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_build_windows.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_complement.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_count_by_interval.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_count_overlapping.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_coverage.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_coverage_by_interval.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_diff_basewise_summary.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_extend_to.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_intersect.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_intersect_basewise.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_merge_overlapping.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_rand_intersect.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bed_subtract_basewise.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/bnMapper.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/div_snp_table_chr.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/find_in_sorted_file.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/gene_fourfold_sites.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/get_scores_in_intervals.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/int_seqs_to_char_strings.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/interval_count_intersections.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/interval_join.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/lav_to_axt.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/lav_to_maf.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/line_select.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/lzop_build_offset_table.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/mMK_bitset.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_build_index.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_chop.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_chunk.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_col_counts.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_col_counts_all.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_count.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_covered_ranges.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_covered_regions.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_div_sites.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_drop_overlapping.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_extract_chrom_ranges.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_extract_ranges.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_extract_ranges_indexed.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_filter.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_filter_max_wc.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_gap_frequency.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_gc_content.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_interval_alignibility.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_limit_to_species.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_mapping_word_frequency.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_mask_cpg.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_mean_length_ungapped_piece.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_percent_columns_matching.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_percent_identity.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_print_chroms.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_print_scores.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_randomize.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_region_coverage_by_src.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_select.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_shuffle_columns.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_species_in_all_files.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_split_by_src.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_thread_for_species.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_tile.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_tile_2.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_tile_2bit.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_to_axt.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_to_concat_fasta.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_to_fasta.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_to_int_seqs.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_translate_chars.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_truncate.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/maf_word_frequency.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/mask_quality.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/nib_chrom_intervals_to_fasta.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/nib_intervals_to_fasta.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/nib_length.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/one_field_per_line.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/out_to_chain.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/prefix_lines.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/pretty_table.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/qv_to_bqv.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/random_lines.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/table_add_column.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/table_filter.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/tfloc_summary.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/ucsc_gene_table_to_intervals.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/wiggle_to_array_tree.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/wiggle_to_binned_array.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/wiggle_to_chr_binned_array.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin copying build/scripts-3.7/wiggle_to_simple.py -> /build/python-bx-0.8.2/debian/python3-bx/usr/bin changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/aggregate_scores_in_intervals.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/align_print_template.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/axt_extract_ranges.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/axt_to_fasta.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/axt_to_lav.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/axt_to_maf.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_bigwig_profile.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_build_windows.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_complement.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_count_by_interval.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_count_overlapping.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_coverage.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_coverage_by_interval.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_diff_basewise_summary.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_extend_to.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_intersect.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_intersect_basewise.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_merge_overlapping.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_rand_intersect.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bed_subtract_basewise.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/bnMapper.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/div_snp_table_chr.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/find_in_sorted_file.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/gene_fourfold_sites.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/get_scores_in_intervals.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/int_seqs_to_char_strings.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/interval_count_intersections.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/interval_join.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/lav_to_axt.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/lav_to_maf.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/line_select.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/lzop_build_offset_table.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/mMK_bitset.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_build_index.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_chop.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_chunk.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_col_counts.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_col_counts_all.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_count.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_covered_ranges.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_covered_regions.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_div_sites.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_drop_overlapping.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_extract_chrom_ranges.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_extract_ranges.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_extract_ranges_indexed.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_filter.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_filter_max_wc.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_gap_frequency.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_gc_content.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_interval_alignibility.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_limit_to_species.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_mapping_word_frequency.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_mask_cpg.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_mean_length_ungapped_piece.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_percent_columns_matching.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_percent_identity.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_print_chroms.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_print_scores.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_randomize.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_region_coverage_by_src.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_select.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_shuffle_columns.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_species_in_all_files.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_split_by_src.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_thread_for_species.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_tile.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_tile_2.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_tile_2bit.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_to_axt.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_to_concat_fasta.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_to_fasta.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_to_int_seqs.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_translate_chars.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_truncate.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/maf_word_frequency.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/mask_quality.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/nib_chrom_intervals_to_fasta.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/nib_intervals_to_fasta.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/nib_length.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/one_field_per_line.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/out_to_chain.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/prefix_lines.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/pretty_table.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/qv_to_bqv.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/random_lines.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/table_add_column.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/table_filter.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/tfloc_summary.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/ucsc_gene_table_to_intervals.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/wiggle_to_array_tree.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/wiggle_to_binned_array.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/wiggle_to_chr_binned_array.py to 755 changing mode of /build/python-bx-0.8.2/debian/python3-bx/usr/bin/wiggle_to_simple.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/python-bx-0.8.2' dh_install --autodest dh_install mkdir -p /build/python-bx-0.8.2/debian/python-bx-tools/usr mv /build/python-bx-0.8.2/debian/python-bx/usr/bin /build/python-bx-0.8.2/debian/python-bx-tools/usr/ mkdir -p /build/python-bx-0.8.2/debian/python3-bx-tools/usr mv /build/python-bx-0.8.2/debian/python3-bx/usr/bin /build/python-bx-0.8.2/debian/python3-bx-tools/usr/ make[1]: Leaving directory '/build/python-bx-0.8.2' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild I: dh_python2 fs:343: renaming _seqmapping.so to _seqmapping.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming bitset.so to bitset.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming _nib.so to _nib.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming _twobit.so to _twobit.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming _position_weight_matrix.so to _position_weight_matrix.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming _pwm.so to _pwm.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming _seekbzip2.so to _seekbzip2.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming bgzf.so to bgzf.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming ngramcount.so to ngramcount.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming cluster.so to cluster.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming intersection.so to intersection.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming bbi_file.so to bbi_file.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming bigbed_file.so to bigbed_file.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming bigwig_file.so to bigwig_file.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming bpt_file.so to bpt_file.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming cirtree_file.so to cirtree_file.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming array_tree.so to array_tree.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming bed.so to bed.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming wiggle.so to wiggle.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming _core.so to _core.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming _epo.so to _epo.aarch64-linux-gnu.so I: dh_python2 fs:343: renaming _cpg.so to _cpg.aarch64-linux-gnu.so I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/wiggle_to_simple.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/wiggle_to_chr_binned_array.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/wiggle_to_binned_array.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/wiggle_to_array_tree.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/ucsc_gene_table_to_intervals.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/tfloc_summary.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/table_filter.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/table_add_column.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/random_lines.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/qv_to_bqv.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/pretty_table.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/prefix_lines.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/out_to_chain.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/one_field_per_line.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/nib_length.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/nib_intervals_to_fasta.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/nib_chrom_intervals_to_fasta.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/mask_quality.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_word_frequency.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_truncate.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_translate_chars.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_to_int_seqs.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_to_fasta.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_to_concat_fasta.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_to_axt.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_tile_2bit.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_tile_2.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_tile.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_thread_for_species.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_split_by_src.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_species_in_all_files.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_shuffle_columns.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_select.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_region_coverage_by_src.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_randomize.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_print_scores.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_print_chroms.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_percent_identity.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_percent_columns_matching.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_mean_length_ungapped_piece.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_mask_cpg.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_mapping_word_frequency.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_limit_to_species.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_interval_alignibility.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_gc_content.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_gap_frequency.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_filter_max_wc.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_filter.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_extract_ranges_indexed.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_extract_ranges.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_extract_chrom_ranges.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_drop_overlapping.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_div_sites.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_covered_regions.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_covered_ranges.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_count.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_col_counts_all.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_col_counts.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_chunk.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_chop.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/maf_build_index.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/mMK_bitset.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/lzop_build_offset_table.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/line_select.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/lav_to_maf.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/lav_to_axt.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/interval_join.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/interval_count_intersections.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/int_seqs_to_char_strings.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/get_scores_in_intervals.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/gene_fourfold_sites.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/find_in_sorted_file.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/div_snp_table_chr.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bnMapper.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_subtract_basewise.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_rand_intersect.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_merge_overlapping.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_intersect_basewise.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_intersect.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_extend_to.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_diff_basewise_summary.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_coverage_by_interval.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_coverage.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_count_overlapping.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_count_by_interval.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_complement.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_build_windows.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/bed_bigwig_profile.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/axt_to_maf.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/axt_to_lav.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/axt_to_fasta.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/axt_extract_ranges.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/align_print_template.py I: dh_python2 tools:114: replacing shebang in debian/python-bx-tools/usr/bin/aggregate_scores_in_intervals.py dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-bx: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-bx: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python-bx: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-bx: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-bx: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-bx: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python-bx: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-bx: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-bx-dbgsym' in '../python-bx-dbgsym_0.8.2-1_arm64.deb'. dpkg-deb: building package 'python-bx' in '../python-bx_0.8.2-1_arm64.deb'. dpkg-deb: building package 'python3-bx-dbgsym' in '../python3-bx-dbgsym_0.8.2-1_arm64.deb'. dpkg-deb: building package 'python-bx-tools' in '../python-bx-tools_0.8.2-1_all.deb'. dpkg-deb: building package 'python3-bx' in '../python3-bx_0.8.2-1_arm64.deb'. dpkg-deb: building package 'python3-bx-tools' in '../python3-bx-tools_0.8.2-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-bx_0.8.2-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24572 and its subdirectories I: Current time: Mon Aug 17 06:57:14 -12 2020 I: pbuilder-time-stamp: 1597690634